Defrosting the Digital Library: Bibliographic Tools for the Next Generation Web
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{"title"=>"Defrosting the digital library: Bibliographic tools for the next generation web", "type"=>"generic", "authors"=>[{"first_name"=>"Duncan", "last_name"=>"Hull", "scopus_author_id"=>"14071472100"}, {"first_name"=>"Steve R.", "last_name"=>"Pettifer", "scopus_author_id"=>"6602097064"}, {"first_name"=>"Douglas B.", "last_name"=>"Kell", "scopus_author_id"=>"7103377387"}], "year"=>2008, "source"=>"PLoS Computational Biology", "identifiers"=>{"issn"=>"1553734X", "pmid"=>"18974831", "scopus"=>"2-s2.0-55449101991", "sgr"=>"55449101991", "doi"=>"10.1371/journal.pcbi.1000204", "pui"=>"352619799", "isbn"=>"1553-7358 (Electronic)"}, "id"=>"0cf5702b-0e74-37f3-b54d-79496d754a90", "abstract"=>"Many scientists now manage the bulk of their bibliographic information electronically, thereby organizing their publications and citation material from digital libraries. However, a library has been described as \"thought in cold storage,'' and unfortunately many digital libraries can be cold, impersonal, isolated, and inaccessible places. In this Review, we discuss the current chilly state of digital libraries for the computational biologist, including PubMed, IEEE Xplore, the ACM digital library, ISI Web of Knowledge, Scopus, Citeseer, arXiv, DBLP, and Google Scholar. We illustrate the current process of using these libraries with a typical workflow, and highlight problems with managing data and metadata using URIs. We then examine a range of new applications such as Zotero, Mendeley, Mekentosj Papers, MyNCBl, CiteULike, Connotea, and HubMed that exploit the Web to make these digital libraries more personal, sociable, integrated, and accessible places. We conclude with how these applications may begin to help achieve a digital defrost, and discuss some of the issues that will help or hinder this in terms of making libraries on the Web warmer places in the future, becoming resources that are considerably more useful to both humans and machines.", "link"=>"http://www.mendeley.com/research/defrosting-digital-library-bibliographic-tools-next-generation-web", "reader_count"=>2321, "reader_count_by_academic_status"=>{"Unspecified"=>11, "Professor > Associate Professor"=>131, "Librarian"=>441, "Researcher"=>424, "Student > Doctoral Student"=>50, "Student > Ph. D. Student"=>312, "Student > Postgraduate"=>131, "Other"=>227, "Student > Master"=>246, "Student > Bachelor"=>180, "Lecturer"=>38, "Lecturer > Senior Lecturer"=>17, "Professor"=>111}, "reader_count_by_user_role"=>{"Unspecified"=>11, "Professor > Associate Professor"=>131, "Librarian"=>441, "Researcher"=>424, "Student > Doctoral Student"=>50, "Student > Ph. D. Student"=>312, "Student > Postgraduate"=>131, "Other"=>227, "Student > Master"=>246, "Student > Bachelor"=>180, "Lecturer"=>38, "Lecturer > Senior Lecturer"=>17, "Professor"=>111}, "reader_count_by_subject_area"=>{"Unspecified"=>29, "Agricultural and Biological Sciences"=>455, "Arts and Humanities"=>153, "Philosophy"=>12, "Business, Management and Accounting"=>61, "Chemical Engineering"=>2, "Chemistry"=>32, "Computer Science"=>485, "Decision Sciences"=>1, "Earth and Planetary Sciences"=>33, "Economics, Econometrics and Finance"=>17, "Energy"=>1, "Engineering"=>68, "Environmental Science"=>32, "Biochemistry, Genetics and Molecular Biology"=>24, "Materials Science"=>17, "Mathematics"=>18, "Medicine and Dentistry"=>269, "Neuroscience"=>5, "Pharmacology, Toxicology and Pharmaceutical Science"=>1, "Physics and Astronomy"=>43, "Psychology"=>40, "Social Sciences"=>474, "Immunology and Microbiology"=>3, "Linguistics"=>22, "Veterinary Science and Veterinary Medicine"=>1, "Design"=>18, "Sports and Recreations"=>3}, "reader_count_by_subdiscipline"=>{"Psychology"=>{"Psychology"=>40}, "Sports and Recreations"=>{"Sports and Recreations"=>3}, "Mathematics"=>{"Mathematics"=>18}, "Environmental Science"=>{"Environmental Science"=>32}, "Pharmacology, Toxicology and Pharmaceutical Science"=>{"Pharmacology, Toxicology and Pharmaceutical Science"=>1}, "Chemical Engineering"=>{"Chemical Engineering"=>2}, "Design"=>{"Design"=>18}, "Engineering"=>{"Engineering"=>68}, "Neuroscience"=>{"Neuroscience"=>5}, "Energy"=>{"Energy"=>1}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>3}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>455}, "Computer Science"=>{"Computer Science"=>485}, "Business, Management and Accounting"=>{"Business, Management and Accounting"=>61}, "Linguistics"=>{"Linguistics"=>22}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>24}, "Materials Science"=>{"Materials Science"=>17}, "Medicine and Dentistry"=>{"Medicine and Dentistry"=>269}, "Social Sciences"=>{"Social Sciences"=>474}, "Decision Sciences"=>{"Decision Sciences"=>1}, "Physics and Astronomy"=>{"Physics and Astronomy"=>43}, "Unspecified"=>{"Unspecified"=>29}, "Arts and Humanities"=>{"Arts and Humanities"=>153}, "Chemistry"=>{"Chemistry"=>32}, "Earth and Planetary Sciences"=>{"Earth and Planetary Sciences"=>33}, "Economics, Econometrics and Finance"=>{"Economics, Econometrics and Finance"=>17}, "Philosophy"=>{"Philosophy"=>12}, "Veterinary Science and Veterinary Medicine"=>{"Veterinary Science and Veterinary Medicine"=>1}}, "reader_count_by_country"=>{"Cameroon"=>1, "Malaysia"=>3, "Paraguay"=>1, "Portugal"=>24, "Iceland"=>2, "Greece"=>8, "Austria"=>11, "South Korea"=>1, "Korea (South)"=>1, "Iran"=>2, "Luxembourg"=>4, "Brazil"=>54, "Guam"=>1, "Chile"=>4, "Ecuador"=>3, "Colombia"=>8, "Argentina"=>9, "Hungary"=>3, "Japan"=>13, "Ukraine"=>2, "Ghana"=>1, "Belarus"=>1, "India"=>25, "New Zealand"=>3, "Canada"=>31, "Turkey"=>5, "Belgium"=>17, "Finland"=>6, "Taiwan"=>1, "South Africa"=>16, "Italy"=>17, "Jamaica"=>1, "Peru"=>6, "Germany"=>77, "Republic of Singapore"=>2, "Afghanistan"=>1, "Hong Kong"=>2, "United States"=>195, "Egypt"=>2, "Thailand"=>2, "Russia"=>11, "Malta"=>2, "Saudi Arabia"=>1, "Netherlands"=>24, "Sweden"=>15, "Vietnam"=>1, "Ireland"=>7, "China"=>11, "Poland"=>10, "France"=>22, "Nigeria"=>4, "Kuwait"=>1, "Croatia"=>6, "Romania"=>1, "Philippines"=>2, "United Kingdom"=>101, "Kenya"=>2, "Switzerland"=>21, "Spain"=>47, "Cuba"=>4, "Venezuela"=>1, "Czech Republic"=>6, "Bangladesh"=>2, "Norway"=>11, "Denmark"=>7, "Mexico"=>32, "Uganda"=>1, "Zimbabwe"=>1, "Israel"=>1, "Australia"=>26, "Indonesia"=>6, "Estonia"=>1}, "group_count"=>164}

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Figshare

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  • {"files"=>["https://ndownloader.figshare.com/files/916806"], "description"=>"<p>Tasks represented by white nodes are normally performed exclusively by humans, while tasks shown in blue nodes can be performed wholly or partly by machines of some kind. The main problematic tasks that make digital libraries difficult to use for both machines and humans are “GET” (publication) and “GET METADATA”. These are shown in bold and discussed further in the Identity Crisis section of this paper.</p>", "links"=>[], "tags"=>["workflow", "subset"], "article_id"=>587270, "categories"=>["Information And Computing Sciences", "Cancer"], "users"=>["Duncan Hull", "Steve R. Pettifer", "Douglas B. Kell"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1000204.g004", "stats"=>{"downloads"=>0, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_A_typical_workflow_for_using_a_digital_library_representing_a_subset_of_the_literature_/587270", "title"=>"A typical workflow for using a digital library representing a subset of the literature.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 07:41:17"}
  • {"files"=>["https://ndownloader.figshare.com/files/916521"], "description"=>"<p>A mind map <a href=\"http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000204#pcbi.1000204-Buzan1\" target=\"_blank\">[207]</a> summarizing the contents of this article in a convenient manner.</p>", "links"=>[], "tags"=>["summarizing", "contents", "convenient"], "article_id"=>586979, "categories"=>["Information And Computing Sciences", "Cancer"], "users"=>["Duncan Hull", "Steve R. Pettifer", "Douglas B. Kell"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1000204.g001", "stats"=>{"downloads"=>1, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_A_mind_map_207_summarizing_the_contents_of_this_article_in_a_convenient_manner_/586979", "title"=>"A mind map [207] summarizing the contents of this article in a convenient manner.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 07:39:37"}
  • {"files"=>["https://ndownloader.figshare.com/files/916629"], "description"=>"<p>Of all the libraries described, Google Scholar probably has the widest coverage. However, it is currently not clear exactly how much information Google indexes, what the criteria are for inclusion in the index, and whether it subsumes other digital libraries in the way shown in the figure. Note: the size of sets (circles) in this diagram is NOT proportional to their size, and DBLP, Scopus, and arXiv are shown as a single set for clarity rather than correctness.</p>", "links"=>[], "tags"=>["approximate", "libraries", "summarised"], "article_id"=>587089, "categories"=>["Information And Computing Sciences", "Cancer"], "users"=>["Duncan Hull", "Steve R. Pettifer", "Douglas B. Kell"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1000204.g002", "stats"=>{"downloads"=>2, "page_views"=>9, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_approximate_relative_coverage_and_size_of_selected_digital_libraries_described_in_the_section_Digital_Libraries_DOIs_and_URIs_and_summarised_in_Table_1_/587089", "title"=>"The approximate relative coverage and size of selected digital libraries described in the section Digital Libraries, DOIs, and URIs, and summarised in Table 1.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 07:40:18"}
  • {"files"=>["https://ndownloader.figshare.com/files/916975"], "description"=>"<p>Note that this table summary does not cover all the minutiae of licensing issues.</p>", "links"=>[], "tags"=>["libraries"], "article_id"=>587447, "categories"=>["Information And Computing Sciences", "Cancer"], "users"=>["Duncan Hull", "Steve R. Pettifer", "Douglas B. Kell"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1000204.t001", "stats"=>{"downloads"=>3, "page_views"=>12, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_A_summary_of_some_of_the_digital_libraries_described_in_this_Review_/587447", "title"=>"A summary of some of the digital libraries described in this Review.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-21 07:42:17"}
  • {"files"=>["https://ndownloader.figshare.com/files/916710"], "description"=>"<p>Google Scholar links out to external content using a number of methods including OpenURL <a href=\"http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000204#pcbi.1000204-Apps1\" target=\"_blank\">[89]</a>, shown here by the “Find it via JRUL” (JRUL is a local library) links. Unlike, e.g., WoK, it is relatively easy to create inbound links to individual authors and publications in Google Scholar; see text for details.</p>", "links"=>[], "tags"=>["computer science/information technology", "computational biology/literature analysis"], "article_id"=>587173, "categories"=>["Information And Computing Sciences", "Cancer"], "users"=>["Duncan Hull", "Steve R. Pettifer", "Douglas B. Kell"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1000204.g003", "stats"=>{"downloads"=>2, "page_views"=>9, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Google_Scholar_search_results_identified_by_http_scholar_google_com_scholar_q_8202_8202_mygrid_/587173", "title"=>"Google Scholar search results, identified by http://scholar.google.com/scholar?q = mygrid.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 07:40:44"}

PMC Usage Stats | Further Information

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Relative Metric

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