Methylobacterium Genome Sequences: A Reference Blueprint to Investigate Microbial Metabolism of C1 Compounds from Natural and Industrial Sources
Events
Loading … Spinner

Mendeley | Further Information

{"title"=>"Methylobacterium genome sequences: A reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources", "type"=>"journal", "authors"=>[{"first_name"=>"Stéphane", "last_name"=>"Vuilleumier", "scopus_author_id"=>"56224745200"}, {"first_name"=>"Ludmila", "last_name"=>"Chistoserdova", "scopus_author_id"=>"6603713525"}, {"first_name"=>"Ming Chun", "last_name"=>"Lee", "scopus_author_id"=>"56080116300"}, {"first_name"=>"Françoise", "last_name"=>"Bringel", "scopus_author_id"=>"6603864269"}, {"first_name"=>"Aurélie", "last_name"=>"Lajus", "scopus_author_id"=>"8669691600"}, {"first_name"=>"Zhou", "last_name"=>"Yang", "scopus_author_id"=>"26633221400"}, {"first_name"=>"Benjamin", "last_name"=>"Gourion", "scopus_author_id"=>"14422233800"}, {"first_name"=>"Valérie", "last_name"=>"Barbe", "scopus_author_id"=>"6603517774"}, {"first_name"=>"Jean", "last_name"=>"Chang", "scopus_author_id"=>"35078116200"}, {"first_name"=>"Stéphane", "last_name"=>"Cruveiller", "scopus_author_id"=>"6602351966"}, {"first_name"=>"Carole", "last_name"=>"Dossat", "scopus_author_id"=>"24170861000"}, {"first_name"=>"Will", "last_name"=>"Gillett", "scopus_author_id"=>"56284247800"}, {"first_name"=>"Christelle", "last_name"=>"Gruffaz", "scopus_author_id"=>"23018667100"}, {"first_name"=>"Eric", "last_name"=>"Haugen", "scopus_author_id"=>"7004389106"}, {"first_name"=>"Edith", "last_name"=>"Hourcade", "scopus_author_id"=>"6507029056"}, {"first_name"=>"Ruth", "last_name"=>"Levy", "scopus_author_id"=>"7404060890"}, {"first_name"=>"Sophie", "last_name"=>"Mangenot", "scopus_author_id"=>"6603116479"}, {"first_name"=>"Emilie", "last_name"=>"Muller", "scopus_author_id"=>"37007744000"}, {"first_name"=>"Thierry", "last_name"=>"Nadalig", "scopus_author_id"=>"8501539200"}, {"first_name"=>"Marco", "last_name"=>"Pagni", "scopus_author_id"=>"6604025567"}, {"first_name"=>"Christian", "last_name"=>"Penny", "scopus_author_id"=>"26633128800"}, {"first_name"=>"Rémi", "last_name"=>"Peyraud", "scopus_author_id"=>"26429917000"}, {"first_name"=>"David G.", "last_name"=>"Robinson", "scopus_author_id"=>"26633332400"}, {"first_name"=>"David", "last_name"=>"Roche", "scopus_author_id"=>"24067385200"}, {"first_name"=>"Zoé", "last_name"=>"Rouy", "scopus_author_id"=>"8859541500"}, {"first_name"=>"Channakhone", "last_name"=>"Saenempechek", "scopus_author_id"=>"26633383600"}, {"first_name"=>"Grégory", "last_name"=>"Salvignol", "scopus_author_id"=>"26633192800"}, {"first_name"=>"David", "last_name"=>"Vallenet", "scopus_author_id"=>"6508213959"}, {"first_name"=>"Wu", "last_name"=>"Zaining", "scopus_author_id"=>"13907651500"}, {"first_name"=>"Christopher J.", "last_name"=>"Marx", "scopus_author_id"=>"7006574878"}, {"first_name"=>"Julia A.", "last_name"=>"Vorholt", "scopus_author_id"=>"7003399158"}, {"first_name"=>"Maynard V.", "last_name"=>"Olson", "scopus_author_id"=>"7402052919"}, {"first_name"=>"Rajinder", "last_name"=>"Kaul", "scopus_author_id"=>"7103098611"}, {"first_name"=>"Jean", "last_name"=>"Weissenbach", "scopus_author_id"=>"55634467800"}, {"first_name"=>"Claudine", "last_name"=>"Médigue", "scopus_author_id"=>"55944409500"}, {"first_name"=>"Mary E.", "last_name"=>"Lidstrom", "scopus_author_id"=>"7005190462"}], "year"=>2009, "source"=>"PLoS ONE", "identifiers"=>{"pui"=>"354615947", "pmid"=>"19440302", "doi"=>"10.1371/journal.pone.0005584", "sgr"=>"65949106800", "issn"=>"19326203", "scopus"=>"2-s2.0-65949106800", "isbn"=>"1932-6203 (Electronic)\\r1932-6203 (Linking)"}, "id"=>"ab9a6b36-6285-31a8-9c69-fde68e5cc49f", "abstract"=>"BACKGROUND Methylotrophy describes the ability of organisms to grow on reduced organic compounds without carbon-carbon bonds. The genomes of two pink-pigmented facultative methylotrophic bacteria of the Alpha-proteobacterial genus Methylobacterium, the reference species Methylobacterium extorquens strain AM1 and the dichloromethane-degrading strain DM4, were compared. METHODOLOGY/PRINCIPAL FINDINGS The 6.88 Mb genome of strain AM1 comprises a 5.51 Mb chromosome, a 1.26 Mb megaplasmid and three plasmids, while the 6.12 Mb genome of strain DM4 features a 5.94 Mb chromosome and two plasmids. The chromosomes are highly syntenic and share a large majority of genes, while plasmids are mostly strain-specific, with the exception of a 130 kb region of the strain AM1 megaplasmid which is syntenic to a chromosomal region of strain DM4. Both genomes contain large sets of insertion elements, many of them strain-specific, suggesting an important potential for genomic plasticity. Most of the genomic determinants associated with methylotrophy are nearly identical, with two exceptions that illustrate the metabolic and genomic versatility of Methylobacterium. A 126 kb dichloromethane utilization (dcm) gene cluster is essential for the ability of strain DM4 to use DCM as the sole carbon and energy source for growth and is unique to strain DM4. The methylamine utilization (mau) gene cluster is only found in strain AM1, indicating that strain DM4 employs an alternative system for growth with methylamine. The dcm and mau clusters represent two of the chromosomal genomic islands (AM1: 28; DM4: 17) that were defined. The mau cluster is flanked by mobile elements, but the dcm cluster disrupts a gene annotated as chelatase and for which we propose the name \"island integration determinant\" (iid). CONCLUSION/SIGNIFICANCE These two genome sequences provide a platform for intra- and interspecies genomic comparisons in the genus Methylobacterium, and for investigations of the adaptive mechanisms which allow bacterial lineages to acquire methylotrophic lifestyles.", "link"=>"http://www.mendeley.com/research/methylobacterium-genome-sequences-reference-blueprint-investigate-microbial-metabolism-c1-compounds", "reader_count"=>144, "reader_count_by_academic_status"=>{"Unspecified"=>2, "Professor > Associate Professor"=>11, "Researcher"=>45, "Student > Doctoral Student"=>8, "Student > Ph. D. Student"=>29, "Student > Postgraduate"=>5, "Student > Master"=>21, "Other"=>10, "Student > Bachelor"=>10, "Lecturer"=>1, "Professor"=>2}, "reader_count_by_user_role"=>{"Unspecified"=>2, "Professor > Associate Professor"=>11, "Researcher"=>45, "Student > Doctoral Student"=>8, "Student > Ph. D. Student"=>29, "Student > Postgraduate"=>5, "Student > Master"=>21, "Other"=>10, "Student > Bachelor"=>10, "Lecturer"=>1, "Professor"=>2}, "reader_count_by_subject_area"=>{"Engineering"=>5, "Unspecified"=>7, "Environmental Science"=>8, "Biochemistry, Genetics and Molecular Biology"=>19, "Agricultural and Biological Sciences"=>91, "Medicine and Dentistry"=>2, "Chemistry"=>7, "Computer Science"=>1, "Immunology and Microbiology"=>1, "Earth and Planetary Sciences"=>3}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>5}, "Medicine and Dentistry"=>{"Medicine and Dentistry"=>2}, "Chemistry"=>{"Chemistry"=>7}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>1}, "Earth and Planetary Sciences"=>{"Earth and Planetary Sciences"=>3}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>91}, "Computer Science"=>{"Computer Science"=>1}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>19}, "Unspecified"=>{"Unspecified"=>7}, "Environmental Science"=>{"Environmental Science"=>8}}, "reader_count_by_country"=>{"United States"=>8, "United Kingdom"=>1, "Switzerland"=>1, "India"=>1, "Spain"=>1, "Canada"=>1, "Czech Republic"=>1, "South Korea"=>1, "Sweden"=>1, "Iran"=>1, "Mexico"=>1, "France"=>2, "Germany"=>1}, "group_count"=>4}

CrossRef

Scopus | Further Information

{"@_fa"=>"true", "link"=>[{"@_fa"=>"true", "@ref"=>"self", "@href"=>"https://api.elsevier.com/content/abstract/scopus_id/65949106800"}, {"@_fa"=>"true", "@ref"=>"author-affiliation", "@href"=>"https://api.elsevier.com/content/abstract/scopus_id/65949106800?field=author,affiliation"}, {"@_fa"=>"true", "@ref"=>"scopus", "@href"=>"https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=65949106800&origin=inward"}, {"@_fa"=>"true", "@ref"=>"scopus-citedby", "@href"=>"https://www.scopus.com/inward/citedby.uri?partnerID=HzOxMe3b&scp=65949106800&origin=inward"}], "prism:url"=>"https://api.elsevier.com/content/abstract/scopus_id/65949106800", "dc:identifier"=>"SCOPUS_ID:65949106800", "eid"=>"2-s2.0-65949106800", "dc:title"=>"Methylobacterium genome sequences: A reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources", "dc:creator"=>"Vuilleumier S.", "prism:publicationName"=>"PLoS ONE", "prism:eIssn"=>"19326203", "prism:volume"=>"4", "prism:issueIdentifier"=>"5", "prism:pageRange"=>nil, "prism:coverDate"=>"2009-05-18", "prism:coverDisplayDate"=>"18 May 2009", "prism:doi"=>"10.1371/journal.pone.0005584", "citedby-count"=>"117", "affiliation"=>[{"@_fa"=>"true", "affilname"=>"Universite de Strasbourg", "affiliation-city"=>"Strasbourg", "affiliation-country"=>"France"}], "pubmed-id"=>"19440302", "prism:aggregationType"=>"Journal", "subtype"=>"ar", "subtypeDescription"=>"Article", "article-number"=>"e5584", "source-id"=>"10600153309"}

Facebook

  • {"url"=>"http%3A%2F%2Fjournals.plos.org%2Fplosone%2Farticle%3Fid%3D10.1371%252Fjournal.pone.0005584", "share_count"=>0, "like_count"=>0, "comment_count"=>0, "click_count"=>0, "total_count"=>0}

Counter

  • {"month"=>"5", "year"=>"2009", "pdf_views"=>"32", "xml_views"=>"3", "html_views"=>"264"}
  • {"month"=>"6", "year"=>"2009", "pdf_views"=>"32", "xml_views"=>"1", "html_views"=>"127"}
  • {"month"=>"7", "year"=>"2009", "pdf_views"=>"27", "xml_views"=>"1", "html_views"=>"70"}
  • {"month"=>"8", "year"=>"2009", "pdf_views"=>"16", "xml_views"=>"0", "html_views"=>"63"}
  • {"month"=>"9", "year"=>"2009", "pdf_views"=>"13", "xml_views"=>"0", "html_views"=>"89"}
  • {"month"=>"10", "year"=>"2009", "pdf_views"=>"28", "xml_views"=>"1", "html_views"=>"86"}
  • {"month"=>"11", "year"=>"2009", "pdf_views"=>"13", "xml_views"=>"0", "html_views"=>"66"}
  • {"month"=>"12", "year"=>"2009", "pdf_views"=>"12", "xml_views"=>"1", "html_views"=>"39"}
  • {"month"=>"1", "year"=>"2010", "pdf_views"=>"17", "xml_views"=>"0", "html_views"=>"47"}
  • {"month"=>"2", "year"=>"2010", "pdf_views"=>"21", "xml_views"=>"0", "html_views"=>"61"}
  • {"month"=>"3", "year"=>"2010", "pdf_views"=>"19", "xml_views"=>"0", "html_views"=>"61"}
  • {"month"=>"4", "year"=>"2010", "pdf_views"=>"19", "xml_views"=>"0", "html_views"=>"51"}
  • {"month"=>"5", "year"=>"2010", "pdf_views"=>"19", "xml_views"=>"1", "html_views"=>"62"}
  • {"month"=>"6", "year"=>"2010", "pdf_views"=>"19", "xml_views"=>"0", "html_views"=>"76"}
  • {"month"=>"7", "year"=>"2010", "pdf_views"=>"10", "xml_views"=>"0", "html_views"=>"43"}
  • {"month"=>"8", "year"=>"2010", "pdf_views"=>"15", "xml_views"=>"0", "html_views"=>"46"}
  • {"month"=>"9", "year"=>"2010", "pdf_views"=>"16", "xml_views"=>"1", "html_views"=>"65"}
  • {"month"=>"10", "year"=>"2010", "pdf_views"=>"16", "xml_views"=>"1", "html_views"=>"62"}
  • {"month"=>"11", "year"=>"2010", "pdf_views"=>"16", "xml_views"=>"2", "html_views"=>"67"}
  • {"month"=>"12", "year"=>"2010", "pdf_views"=>"12", "xml_views"=>"0", "html_views"=>"41"}
  • {"month"=>"1", "year"=>"2011", "pdf_views"=>"9", "xml_views"=>"2", "html_views"=>"60"}
  • {"month"=>"2", "year"=>"2011", "pdf_views"=>"23", "xml_views"=>"0", "html_views"=>"48"}
  • {"month"=>"3", "year"=>"2011", "pdf_views"=>"14", "xml_views"=>"0", "html_views"=>"68"}
  • {"month"=>"4", "year"=>"2011", "pdf_views"=>"14", "xml_views"=>"0", "html_views"=>"55"}
  • {"month"=>"5", "year"=>"2011", "pdf_views"=>"13", "xml_views"=>"1", "html_views"=>"36"}
  • {"month"=>"6", "year"=>"2011", "pdf_views"=>"12", "xml_views"=>"1", "html_views"=>"40"}
  • {"month"=>"7", "year"=>"2011", "pdf_views"=>"4", "xml_views"=>"0", "html_views"=>"20"}
  • {"month"=>"8", "year"=>"2011", "pdf_views"=>"7", "xml_views"=>"0", "html_views"=>"40"}
  • {"month"=>"9", "year"=>"2011", "pdf_views"=>"17", "xml_views"=>"0", "html_views"=>"57"}
  • {"month"=>"10", "year"=>"2011", "pdf_views"=>"14", "xml_views"=>"0", "html_views"=>"52"}
  • {"month"=>"11", "year"=>"2011", "pdf_views"=>"18", "xml_views"=>"0", "html_views"=>"72"}
  • {"month"=>"12", "year"=>"2011", "pdf_views"=>"15", "xml_views"=>"0", "html_views"=>"56"}
  • {"month"=>"1", "year"=>"2012", "pdf_views"=>"9", "xml_views"=>"0", "html_views"=>"53"}
  • {"month"=>"2", "year"=>"2012", "pdf_views"=>"13", "xml_views"=>"1", "html_views"=>"48"}
  • {"month"=>"3", "year"=>"2012", "pdf_views"=>"21", "xml_views"=>"0", "html_views"=>"74"}
  • {"month"=>"4", "year"=>"2012", "pdf_views"=>"22", "xml_views"=>"2", "html_views"=>"79"}
  • {"month"=>"5", "year"=>"2012", "pdf_views"=>"26", "xml_views"=>"0", "html_views"=>"122"}
  • {"month"=>"6", "year"=>"2012", "pdf_views"=>"18", "xml_views"=>"1", "html_views"=>"66"}
  • {"month"=>"7", "year"=>"2012", "pdf_views"=>"9", "xml_views"=>"0", "html_views"=>"65"}
  • {"month"=>"8", "year"=>"2012", "pdf_views"=>"14", "xml_views"=>"5", "html_views"=>"58"}
  • {"month"=>"9", "year"=>"2012", "pdf_views"=>"28", "xml_views"=>"0", "html_views"=>"125"}
  • {"month"=>"10", "year"=>"2012", "pdf_views"=>"16", "xml_views"=>"1", "html_views"=>"139"}
  • {"month"=>"11", "year"=>"2012", "pdf_views"=>"10", "xml_views"=>"0", "html_views"=>"119"}
  • {"month"=>"12", "year"=>"2012", "pdf_views"=>"8", "xml_views"=>"1", "html_views"=>"84"}
  • {"month"=>"1", "year"=>"2013", "pdf_views"=>"9", "xml_views"=>"0", "html_views"=>"126"}
  • {"month"=>"2", "year"=>"2013", "pdf_views"=>"12", "xml_views"=>"1", "html_views"=>"79"}
  • {"month"=>"3", "year"=>"2013", "pdf_views"=>"19", "xml_views"=>"2", "html_views"=>"98"}
  • {"month"=>"4", "year"=>"2013", "pdf_views"=>"17", "xml_views"=>"0", "html_views"=>"89"}
  • {"month"=>"5", "year"=>"2013", "pdf_views"=>"16", "xml_views"=>"0", "html_views"=>"91"}
  • {"month"=>"6", "year"=>"2013", "pdf_views"=>"15", "xml_views"=>"0", "html_views"=>"75"}
  • {"month"=>"7", "year"=>"2013", "pdf_views"=>"18", "xml_views"=>"1", "html_views"=>"92"}
  • {"month"=>"8", "year"=>"2013", "pdf_views"=>"11", "xml_views"=>"0", "html_views"=>"67"}
  • {"month"=>"9", "year"=>"2013", "pdf_views"=>"8", "xml_views"=>"0", "html_views"=>"69"}
  • {"month"=>"10", "year"=>"2013", "pdf_views"=>"18", "xml_views"=>"1", "html_views"=>"131"}
  • {"month"=>"11", "year"=>"2013", "pdf_views"=>"15", "xml_views"=>"1", "html_views"=>"135"}
  • {"month"=>"12", "year"=>"2013", "pdf_views"=>"16", "xml_views"=>"1", "html_views"=>"136"}
  • {"month"=>"1", "year"=>"2014", "pdf_views"=>"22", "xml_views"=>"0", "html_views"=>"149"}
  • {"month"=>"2", "year"=>"2014", "pdf_views"=>"16", "xml_views"=>"1", "html_views"=>"177"}
  • {"month"=>"3", "year"=>"2014", "pdf_views"=>"16", "xml_views"=>"3", "html_views"=>"220"}
  • {"month"=>"4", "year"=>"2014", "pdf_views"=>"15", "xml_views"=>"1", "html_views"=>"182"}
  • {"month"=>"5", "year"=>"2014", "pdf_views"=>"14", "xml_views"=>"0", "html_views"=>"211"}
  • {"month"=>"6", "year"=>"2014", "pdf_views"=>"18", "xml_views"=>"1", "html_views"=>"160"}
  • {"month"=>"7", "year"=>"2014", "pdf_views"=>"12", "xml_views"=>"0", "html_views"=>"157"}
  • {"month"=>"8", "year"=>"2014", "pdf_views"=>"15", "xml_views"=>"2", "html_views"=>"120"}
  • {"month"=>"9", "year"=>"2014", "pdf_views"=>"9", "xml_views"=>"1", "html_views"=>"115"}
  • {"month"=>"10", "year"=>"2014", "pdf_views"=>"15", "xml_views"=>"1", "html_views"=>"156"}
  • {"month"=>"11", "year"=>"2014", "pdf_views"=>"9", "xml_views"=>"2", "html_views"=>"193"}
  • {"month"=>"12", "year"=>"2014", "pdf_views"=>"12", "xml_views"=>"1", "html_views"=>"116"}
  • {"month"=>"1", "year"=>"2015", "pdf_views"=>"25", "xml_views"=>"0", "html_views"=>"117"}
  • {"month"=>"2", "year"=>"2015", "pdf_views"=>"22", "xml_views"=>"0", "html_views"=>"77"}
  • {"month"=>"3", "year"=>"2015", "pdf_views"=>"14", "xml_views"=>"0", "html_views"=>"84"}
  • {"month"=>"4", "year"=>"2015", "pdf_views"=>"18", "xml_views"=>"2", "html_views"=>"64"}
  • {"month"=>"5", "year"=>"2015", "pdf_views"=>"14", "xml_views"=>"0", "html_views"=>"94"}
  • {"month"=>"6", "year"=>"2015", "pdf_views"=>"10", "xml_views"=>"0", "html_views"=>"67"}
  • {"month"=>"7", "year"=>"2015", "pdf_views"=>"10", "xml_views"=>"0", "html_views"=>"59"}
  • {"month"=>"8", "year"=>"2015", "pdf_views"=>"14", "xml_views"=>"1", "html_views"=>"65"}
  • {"month"=>"9", "year"=>"2015", "pdf_views"=>"13", "xml_views"=>"1", "html_views"=>"117"}
  • {"month"=>"10", "year"=>"2015", "pdf_views"=>"30", "xml_views"=>"0", "html_views"=>"164"}
  • {"month"=>"11", "year"=>"2015", "pdf_views"=>"28", "xml_views"=>"0", "html_views"=>"162"}
  • {"month"=>"12", "year"=>"2015", "pdf_views"=>"11", "xml_views"=>"0", "html_views"=>"149"}
  • {"month"=>"1", "year"=>"2016", "pdf_views"=>"15", "xml_views"=>"1", "html_views"=>"156"}
  • {"month"=>"2", "year"=>"2016", "pdf_views"=>"3", "xml_views"=>"0", "html_views"=>"86"}
  • {"month"=>"3", "year"=>"2016", "pdf_views"=>"7", "xml_views"=>"0", "html_views"=>"129"}
  • {"month"=>"4", "year"=>"2016", "pdf_views"=>"18", "xml_views"=>"0", "html_views"=>"74"}
  • {"month"=>"5", "year"=>"2016", "pdf_views"=>"15", "xml_views"=>"0", "html_views"=>"57"}
  • {"month"=>"6", "year"=>"2016", "pdf_views"=>"10", "xml_views"=>"0", "html_views"=>"40"}
  • {"month"=>"7", "year"=>"2016", "pdf_views"=>"12", "xml_views"=>"0", "html_views"=>"37"}
  • {"month"=>"8", "year"=>"2016", "pdf_views"=>"18", "xml_views"=>"0", "html_views"=>"102"}
  • {"month"=>"9", "year"=>"2016", "pdf_views"=>"21", "xml_views"=>"0", "html_views"=>"78"}
  • {"month"=>"10", "year"=>"2016", "pdf_views"=>"13", "xml_views"=>"0", "html_views"=>"39"}
  • {"month"=>"11", "year"=>"2016", "pdf_views"=>"9", "xml_views"=>"0", "html_views"=>"55"}
  • {"month"=>"12", "year"=>"2016", "pdf_views"=>"11", "xml_views"=>"0", "html_views"=>"89"}
  • {"month"=>"1", "year"=>"2017", "pdf_views"=>"22", "xml_views"=>"0", "html_views"=>"60"}
  • {"month"=>"2", "year"=>"2017", "pdf_views"=>"19", "xml_views"=>"0", "html_views"=>"90"}
  • {"month"=>"3", "year"=>"2017", "pdf_views"=>"20", "xml_views"=>"0", "html_views"=>"78"}
  • {"month"=>"4", "year"=>"2017", "pdf_views"=>"10", "xml_views"=>"1", "html_views"=>"69"}
  • {"month"=>"5", "year"=>"2017", "pdf_views"=>"34", "xml_views"=>"0", "html_views"=>"42"}
  • {"month"=>"6", "year"=>"2017", "pdf_views"=>"9", "xml_views"=>"1", "html_views"=>"56"}
  • {"month"=>"7", "year"=>"2017", "pdf_views"=>"14", "xml_views"=>"3", "html_views"=>"44"}
  • {"month"=>"8", "year"=>"2017", "pdf_views"=>"14", "xml_views"=>"3", "html_views"=>"49"}
  • {"month"=>"9", "year"=>"2017", "pdf_views"=>"14", "xml_views"=>"0", "html_views"=>"46"}
  • {"month"=>"10", "year"=>"2017", "pdf_views"=>"18", "xml_views"=>"2", "html_views"=>"81"}
  • {"month"=>"11", "year"=>"2017", "pdf_views"=>"7", "xml_views"=>"0", "html_views"=>"49"}

Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/897994"], "description"=>"<p>The bar length shows the total intact IS copy number of each IS family in DM4 (right) and AM1 (left) (see Suppl. <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0005584#pone.0005584.s004\" target=\"_blank\">Table S4</a>). Differently colored regions represent different replicons : blue – DM4 chromosome, cyan – DM4 plasmid p1METDI, green – DM4 plasmid p2METDI, pink – AM1 chromosome, orange – AM1 megaplasmid, dark yellow – AM1 plasmid p1META1, light yellow – AM1 plasmid p2META1, light green – AM1 plasmid p3META1. Open circles and squares represent the numbers of different types of ISs within each family in AM1 and DM4, respectively.</p>", "links"=>[], "tags"=>["iss", "am1"], "article_id"=>568397, "categories"=>["Biotechnology", "Microbiology", "Genetics"], "users"=>["Stéphane Vuilleumier", "Ludmila Chistoserdova", "Ming-Chun Lee", "Françoise Bringel", "Aurélie Lajus", "Yang Zhou", "Benjamin Gourion", "Valérie Barbe", "Jean Chang", "Stéphane Cruveiller", "Carole Dossat", "Will Gillett", "Christelle Gruffaz", "Eric Haugen", "Edith Hourcade", "Ruth Levy", "Sophie Mangenot", "Emilie Muller", "Thierry Nadalig", "Marco Pagni", "Christian Penny", "Rémi Peyraud", "David G. Robinson", "David Roche", "Zoé Rouy", "Channakhone Saenampechek", "Grégory Salvignol", "David Vallenet", "Zaining Wu", "Christopher J. Marx", "Julia A. Vorholt", "Maynard V. Olson", "Rajinder Kaul", "Jean Weissenbach", "Claudine Médigue", "Mary E. Lidstrom"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0005584.g005", "stats"=>{"downloads"=>0, "page_views"=>12, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_IS_family_distribution_of_intact_ISs_in_M_extorquens_AM1_and_DM4_/568397", "title"=>"IS family distribution of intact ISs in <i>M. extorquens</i> AM1 and DM4.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2009-05-18 02:19:57"}
  • {"files"=>["https://ndownloader.figshare.com/files/898335"], "description"=>"a<p>int: integrase; mob: mobility determinant; GC: region with atypical GC content; AH: region rich in genes detected by Alien Hunter; IS: Insertion Sequence; MITE: Miniature Inverted Repeat Transposable Element.</p>b<p>no homolog with >80% identity/0.8 minLrap value in the chromosome of the compared strain.</p>c<p>as detected by Alien Hunter (<a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0005584#pone.0005584-Vernikos1\" target=\"_blank\">[46]</a>, see <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0005584#s3\" target=\"_blank\">Materials and Methods</a>).</p>d<p>including one putative MITE.</p>", "links"=>[], "tags"=>["regions", "am1", "dm4"], "article_id"=>568745, "categories"=>["Biotechnology", "Microbiology", "Genetics"], "users"=>["Stéphane Vuilleumier", "Ludmila Chistoserdova", "Ming-Chun Lee", "Françoise Bringel", "Aurélie Lajus", "Yang Zhou", "Benjamin Gourion", "Valérie Barbe", "Jean Chang", "Stéphane Cruveiller", "Carole Dossat", "Will Gillett", "Christelle Gruffaz", "Eric Haugen", "Edith Hourcade", "Ruth Levy", "Sophie Mangenot", "Emilie Muller", "Thierry Nadalig", "Marco Pagni", "Christian Penny", "Rémi Peyraud", "David G. Robinson", "David Roche", "Zoé Rouy", "Channakhone Saenampechek", "Grégory Salvignol", "David Vallenet", "Zaining Wu", "Christopher J. Marx", "Julia A. Vorholt", "Maynard V. Olson", "Rajinder Kaul", "Jean Weissenbach", "Claudine Médigue", "Mary E. Lidstrom"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0005584.t003", "stats"=>{"downloads"=>3, "page_views"=>11, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Unique_regions_in_M_extorquens_AM1_and_DM4_chromosomes_/568745", "title"=>"Unique regions in <i>M. extorquens</i> AM1 and DM4 chromosomes.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2009-05-18 02:25:45"}
  • {"files"=>["https://ndownloader.figshare.com/files/897371"], "description"=>"<p>Full lines, H<sub>4</sub>MPT-dependent pathway, H<sub>4</sub>F-dependent pathway, serine cycle and ethylmalonyl-CoA pathway for glyoxylate regeneration; broken line, tricarboxylic acid cycle reactions (2-oxoglutarate dehydrogenase activity (and a dissimilatory TCA cycle) are not essential for methylotrophic growth <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0005584#pone.0005584-Taylor1\" target=\"_blank\">[93]</a>, <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0005584#pone.0005584-vanDien1\" target=\"_blank\">[94]</a>). Key pathway outputs <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0005584#pone.0005584-Peyraud1\" target=\"_blank\">[13]</a> used for carbon assimilation (biomass production) are shown in bold italics. Genes involved in the serine cycle, the TCA cycle and in the ethylmalonyl-CoA pathway are indicated. Genes given on the same line and not separated by hyphens are closely associated on the chromosome. Genes and their arrangement on the chromosome are strongly conserved in strains AM1 and DM4 (see Suppl. <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0005584#pone.0005584.s001\" target=\"_blank\">Table S1</a>), except the <i>mau</i> cluster for methylamine utilization and the <i>dcm</i> cluster for dichloromethane utilization which are unique to strain AM1 and strain DM4, respectively.</p>", "links"=>[], "tags"=>["pathways", "carbon", "methylotrophic"], "article_id"=>567768, "categories"=>["Biotechnology", "Microbiology", "Genetics"], "users"=>["Stéphane Vuilleumier", "Ludmila Chistoserdova", "Ming-Chun Lee", "Françoise Bringel", "Aurélie Lajus", "Yang Zhou", "Benjamin Gourion", "Valérie Barbe", "Jean Chang", "Stéphane Cruveiller", "Carole Dossat", "Will Gillett", "Christelle Gruffaz", "Eric Haugen", "Edith Hourcade", "Ruth Levy", "Sophie Mangenot", "Emilie Muller", "Thierry Nadalig", "Marco Pagni", "Christian Penny", "Rémi Peyraud", "David G. Robinson", "David Roche", "Zoé Rouy", "Channakhone Saenampechek", "Grégory Salvignol", "David Vallenet", "Zaining Wu", "Christopher J. Marx", "Julia A. Vorholt", "Maynard V. Olson", "Rajinder Kaul", "Jean Weissenbach", "Claudine Médigue", "Mary E. Lidstrom"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0005584.g001", "stats"=>{"downloads"=>0, "page_views"=>1, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Central_pathways_for_carbon_conversion_in_Methylobacterium_during_methylotrophic_growth_/567768", "title"=>"Central pathways for carbon conversion in <i>Methylobacterium</i> during methylotrophic growth.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2009-05-18 02:09:28"}
  • {"files"=>["https://ndownloader.figshare.com/files/444557", "https://ndownloader.figshare.com/files/444603", "https://ndownloader.figshare.com/files/444626", "https://ndownloader.figshare.com/files/444648"], "description"=>"<div><h3>Background</h3><p>Methylotrophy describes the ability of organisms to grow on reduced organic compounds without carbon-carbon bonds. The genomes of two pink-pigmented facultative methylotrophic bacteria of the Alpha-proteobacterial genus <em>Methylobacterium</em>, the reference species <em>Methylobacterium extorquens</em> strain AM1 and the dichloromethane-degrading strain DM4, were compared.</p><h3>Methodology/Principal Findings</h3><p>The 6.88 Mb genome of strain AM1 comprises a 5.51 Mb chromosome, a 1.26 Mb megaplasmid and three plasmids, while the 6.12 Mb genome of strain DM4 features a 5.94 Mb chromosome and two plasmids. The chromosomes are highly syntenic and share a large majority of genes, while plasmids are mostly strain-specific, with the exception of a 130 kb region of the strain AM1 megaplasmid which is syntenic to a chromosomal region of strain DM4. Both genomes contain large sets of insertion elements, many of them strain-specific, suggesting an important potential for genomic plasticity. Most of the genomic determinants associated with methylotrophy are nearly identical, with two exceptions that illustrate the metabolic and genomic versatility of <em>Methylobacterium</em>. A 126 kb dichloromethane utilization (<em>dcm</em>) gene cluster is essential for the ability of strain DM4 to use DCM as the sole carbon and energy source for growth and is unique to strain DM4. The methylamine utilization (<em>mau</em>) gene cluster is only found in strain AM1, indicating that strain DM4 employs an alternative system for growth with methylamine. The <em>dcm</em> and <em>mau</em> clusters represent two of the chromosomal genomic islands (AM1: 28; DM4: 17) that were defined. The <em>mau</em> cluster is flanked by mobile elements, but the <em>dcm</em> cluster disrupts a gene annotated as chelatase and for which we propose the name “island integration determinant” (<em>iid</em>).</p><h3>Conclusion/Significance</h3><p>These two genome sequences provide a platform for intra- and interspecies genomic comparisons in the genus <em>Methylobacterium</em>, and for investigations of the adaptive mechanisms which allow bacterial lineages to acquire methylotrophic lifestyles.</p></div>", "links"=>[], "tags"=>["genome", "blueprint", "microbial", "metabolism", "c1", "compounds", "sources"], "article_id"=>147605, "categories"=>["Biotechnology", "Microbiology", "Genetics"], "users"=>["Stéphane Vuilleumier", "Ludmila Chistoserdova", "Ming-Chun Lee", "Françoise Bringel", "Aurélie Lajus", "Yang Zhou", "Benjamin Gourion", "Valérie Barbe", "Jean Chang", "Stéphane Cruveiller", "Carole Dossat", "Will Gillett", "Christelle Gruffaz", "Eric Haugen", "Edith Hourcade", "Ruth Levy", "Sophie Mangenot", "Emilie Muller", "Thierry Nadalig", "Marco Pagni", "Christian Penny", "Rémi Peyraud", "David G. Robinson", "David Roche", "Zoé Rouy", "Channakhone Saenampechek", "Grégory Salvignol", "David Vallenet", "Zaining Wu", "Christopher J. Marx", "Julia A. Vorholt", "Maynard V. Olson", "Rajinder Kaul", "Jean Weissenbach", "Claudine Médigue", "Mary E. Lidstrom"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0005584.s001", "https://dx.doi.org/10.1371/journal.pone.0005584.s002", "https://dx.doi.org/10.1371/journal.pone.0005584.s003", "https://dx.doi.org/10.1371/journal.pone.0005584.s004"], "stats"=>{"downloads"=>19, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Methylobacterium_Genome_Sequences_A_Reference_Blueprint_to_Investigate_Microbial_Metabolism_of_C1_Compounds_from_Natural_and_Industrial_Sources/147605", "title"=>"<em>Methylobacterium</em> Genome Sequences: A Reference Blueprint to Investigate Microbial Metabolism of C1 Compounds from Natural and Industrial Sources", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2009-05-18 02:06:45"}
  • {"files"=>["https://ndownloader.figshare.com/files/897520"], "description"=>"<p>Successive circles from inside to outside: GC skew; GC deviation (with values exceeding +/− 2SD indicated in red); rRNA (pink); tRNA (green); IS elements (brown); all genes coloured according to functional class (COG); methylotrophy genes (blue, see Suppl. <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0005584#pone.0005584.s001\" target=\"_blank\">Table S1</a>); strain-specific genes (yellow, except genes predicted to be of foreign origin, in red); genomic islands (green, see <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0005584#pone-0005584-t003\" target=\"_blank\">Table 3</a>). Plasmids are not shown to scale.</p>", "links"=>[], "tags"=>["circular", "replicons", "genomes", "strains", "am1", "dm4"], "article_id"=>567921, "categories"=>["Biotechnology", "Microbiology", "Genetics"], "users"=>["Stéphane Vuilleumier", "Ludmila Chistoserdova", "Ming-Chun Lee", "Françoise Bringel", "Aurélie Lajus", "Yang Zhou", "Benjamin Gourion", "Valérie Barbe", "Jean Chang", "Stéphane Cruveiller", "Carole Dossat", "Will Gillett", "Christelle Gruffaz", "Eric Haugen", "Edith Hourcade", "Ruth Levy", "Sophie Mangenot", "Emilie Muller", "Thierry Nadalig", "Marco Pagni", "Christian Penny", "Rémi Peyraud", "David G. Robinson", "David Roche", "Zoé Rouy", "Channakhone Saenampechek", "Grégory Salvignol", "David Vallenet", "Zaining Wu", "Christopher J. Marx", "Julia A. Vorholt", "Maynard V. Olson", "Rajinder Kaul", "Jean Weissenbach", "Claudine Médigue", "Mary E. Lidstrom"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0005584.g002", "stats"=>{"downloads"=>0, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Schematic_representation_of_the_8_circular_replicons_in_the_genomes_of_Methylobacterium_extorquens_strains_AM1_top_and_DM4_bottom_/567921", "title"=>"Schematic representation of the 8 circular replicons in the genomes of <i>Methylobacterium extorquens</i> strains AM1 (top) and DM4 (bottom).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2009-05-18 02:12:01"}
  • {"files"=>["https://ndownloader.figshare.com/files/897865"], "description"=>"<p>Sequences were retreived from Genbank and visualized using CLC Sequence Viewer 5 (<a href=\"http://www.clcbio.com\" target=\"_blank\">www.clcbio.com</a>). Chromosome sequence positions are indicated, as well as the percent identity at the protein level with <i>Methylobacterium</i> prototypes (nd: not detectable). Formate tetrahydrofolate ligase/formyl-tetrahydrofolate synthetase (<i>ftfL</i>, black); serine hydroxymethyltransferase (<i>glyA</i>, pink); serine glyxoylate aminotransferase (<i>sga</i>, yellow); hydroxypyruvate reductase (<i>hprA</i>, red); glycerate kinase (<i>gck</i>, purple); phosphoenolpyruvate carboxylase (<i>ppc</i>, orange); malyl-CoA lyase/β-methylmalyl-CoA lyase (<i>mcl</i>, dark green); malate thiokinase (<i>mtkA</i>/<i>mtkB</i>, light green); NAD(P)-dependent methylene-tetrahydromethanopterin/methylene-tetrahydrofolate dehydrogenase (<i>mtdA</i>, dark blue); methenyl tetrahydrofolate cyclohydrolase (<i>fch</i>, light blue); bifunctional methylene-tetrahydrofolate dehydrogenase/methenyl-tetrahydrofolate cyclohydrolase (<i>folD</i>, grey); transcriptional regulator (pale green); other (white); tRNA (black rectangles).</p>", "links"=>[], "tags"=>["serine", "genes", "methylotrophic", "metabolism", "sequenced"], "article_id"=>568271, "categories"=>["Biotechnology", "Microbiology", "Genetics"], "users"=>["Stéphane Vuilleumier", "Ludmila Chistoserdova", "Ming-Chun Lee", "Françoise Bringel", "Aurélie Lajus", "Yang Zhou", "Benjamin Gourion", "Valérie Barbe", "Jean Chang", "Stéphane Cruveiller", "Carole Dossat", "Will Gillett", "Christelle Gruffaz", "Eric Haugen", "Edith Hourcade", "Ruth Levy", "Sophie Mangenot", "Emilie Muller", "Thierry Nadalig", "Marco Pagni", "Christian Penny", "Rémi Peyraud", "David G. Robinson", "David Roche", "Zoé Rouy", "Channakhone Saenampechek", "Grégory Salvignol", "David Vallenet", "Zaining Wu", "Christopher J. Marx", "Julia A. Vorholt", "Maynard V. Olson", "Rajinder Kaul", "Jean Weissenbach", "Claudine Médigue", "Mary E. Lidstrom"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0005584.g004", "stats"=>{"downloads"=>1, "page_views"=>86, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Clustering_and_conservation_of_serine_cycle_and_other_genes_important_for_methylotrophic_metabolism_in_sequenced_methylotrophic_bacteria_/568271", "title"=>"Clustering and conservation of serine cycle and other genes important for methylotrophic metabolism in sequenced methylotrophic bacteria.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2009-05-18 02:17:51"}
  • {"files"=>["https://ndownloader.figshare.com/files/897710"], "description"=>"<p>The linearized replicons were aligned and visualized by Lineplot in Mage. Syntenic relationships comprising at least 8 genes are indicated by violet and blue lines for genes found on the same strandor on opposite strands, respectively. IS elements (pink), ribosomal operons (blue) and tRNAs (green) are also indicated.</p>", "links"=>[], "tags"=>["synteny", "am1"], "article_id"=>568120, "categories"=>["Biotechnology", "Microbiology", "Genetics"], "users"=>["Stéphane Vuilleumier", "Ludmila Chistoserdova", "Ming-Chun Lee", "Françoise Bringel", "Aurélie Lajus", "Yang Zhou", "Benjamin Gourion", "Valérie Barbe", "Jean Chang", "Stéphane Cruveiller", "Carole Dossat", "Will Gillett", "Christelle Gruffaz", "Eric Haugen", "Edith Hourcade", "Ruth Levy", "Sophie Mangenot", "Emilie Muller", "Thierry Nadalig", "Marco Pagni", "Christian Penny", "Rémi Peyraud", "David G. Robinson", "David Roche", "Zoé Rouy", "Channakhone Saenampechek", "Grégory Salvignol", "David Vallenet", "Zaining Wu", "Christopher J. Marx", "Julia A. Vorholt", "Maynard V. Olson", "Rajinder Kaul", "Jean Weissenbach", "Claudine Médigue", "Mary E. Lidstrom"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0005584.g003", "stats"=>{"downloads"=>1, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Overall_synteny_between_M_extorquens_AM1_and_DM4_/568120", "title"=>"Overall synteny between <i>M. extorquens</i> AM1 and DM4.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2009-05-18 02:15:20"}
  • {"files"=>["https://ndownloader.figshare.com/files/898520"], "description"=>"a<p>CDS number, % identity at protein level and genomic island integration position relative to the intact island integration determinant CDS META1_1797 of <i>M. extorquens</i> AM1.</p>b<p>CDS number, orientation relative to the upstream island integration determinant and % identity at protein level with the recombinase of strain DM4.</p>c<p>DR: direct repeat; PAL: palindrome; Rec: recombinase. Slashes indicate sequence overlap, > and < indicate end and begin of mirror palindromic sequences. In <i>M. loti</i>, the two palindromic sequence pairs are only separated by three and four bases, respectively. Overlapping segments of direct repeat and palindromic sequences are indicated in bold or underlined (5′-end or 3′-end of the genomic island, respectively). Bases between square brackets indicate alternative bases in the corresponding motif.</p>d<p>Genome %GC content given in brackets.</p>", "links"=>[], "tags"=>["determinant", "genomic", "islands", "completed", "microbial"], "article_id"=>568907, "categories"=>["Biotechnology", "Microbiology", "Genetics"], "users"=>["Stéphane Vuilleumier", "Ludmila Chistoserdova", "Ming-Chun Lee", "Françoise Bringel", "Aurélie Lajus", "Yang Zhou", "Benjamin Gourion", "Valérie Barbe", "Jean Chang", "Stéphane Cruveiller", "Carole Dossat", "Will Gillett", "Christelle Gruffaz", "Eric Haugen", "Edith Hourcade", "Ruth Levy", "Sophie Mangenot", "Emilie Muller", "Thierry Nadalig", "Marco Pagni", "Christian Penny", "Rémi Peyraud", "David G. Robinson", "David Roche", "Zoé Rouy", "Channakhone Saenampechek", "Grégory Salvignol", "David Vallenet", "Zaining Wu", "Christopher J. Marx", "Julia A. Vorholt", "Maynard V. Olson", "Rajinder Kaul", "Jean Weissenbach", "Claudine Médigue", "Mary E. Lidstrom"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0005584.t004", "stats"=>{"downloads"=>0, "page_views"=>1, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Chelatase_like_Island_integration_determinant_iid_associated_with_genomic_islands_in_completed_microbial_genomes_/568907", "title"=>"<b>Chelatase</b>-like Island integration determinant (<i>iid</i>) associated with genomic islands in completed microbial genomes.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2009-05-18 02:28:27"}
  • {"files"=>["https://ndownloader.figshare.com/files/898126"], "description"=>"<p>All functional annotations are putative except for the DCM dehalogenase gene and its upstream regulator (bold). Highlighted are genes for putative enzymes (red), regulators (orange) transporters (yellow), proteins involved in DNA modification (blue), transposases (cyan), proteins involved in plasmid functions (green), and gene fragments (grey), with hypothetical and conserved hypothetical proteins left in white. The interrupted chelatase-likegene (hashed) defined here as “island integration determinant” flanks the 126 kb <i>dcm</i> island.</p>", "links"=>[], "tags"=>["microbiology", "biotechnology/bioengineering", "biotechnology/environmental microbiology", "genetics and genomics/comparative genomics", "genetics and genomics/genome projects", "genetics and genomics/genomics", "genetics and genomics/microbial evolution and genomics", "microbiology/environmental microbiology", "microbiology/microbial evolution and genomics", "microbiology/microbial physiology and metabolism"], "article_id"=>568536, "categories"=>["Biotechnology", "Microbiology", "Genetics"], "users"=>["Stéphane Vuilleumier", "Ludmila Chistoserdova", "Ming-Chun Lee", "Françoise Bringel", "Aurélie Lajus", "Yang Zhou", "Benjamin Gourion", "Valérie Barbe", "Jean Chang", "Stéphane Cruveiller", "Carole Dossat", "Will Gillett", "Christelle Gruffaz", "Eric Haugen", "Edith Hourcade", "Ruth Levy", "Sophie Mangenot", "Emilie Muller", "Thierry Nadalig", "Marco Pagni", "Christian Penny", "Rémi Peyraud", "David G. Robinson", "David Roche", "Zoé Rouy", "Channakhone Saenampechek", "Grégory Salvignol", "David Vallenet", "Zaining Wu", "Christopher J. Marx", "Julia A. Vorholt", "Maynard V. Olson", "Rajinder Kaul", "Jean Weissenbach", "Claudine Médigue", "Mary E. Lidstrom"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0005584.g006", "stats"=>{"downloads"=>0, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_dcm_region_of_strain_DM4_/568536", "title"=>"<i>dcm</i> region of strain DM4.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2009-05-18 02:22:16"}
  • {"files"=>["https://ndownloader.figshare.com/files/898248"], "description"=>"a<p>Only the first COG hit of each CDS is considered (CDS may be associated with several COGs).</p>b<p>Processes: Cellular processes and signaling (D,M,N,O,T,U,V); information storage and processing (B,J,K,L); metabolism (C,E,F,G,H,I,P,Q); and poorly characterized (R,S).</p>", "links"=>[], "tags"=>["classes", "am1", "dm4", "replicons"], "article_id"=>568662, "categories"=>["Biotechnology", "Microbiology", "Genetics"], "users"=>["Stéphane Vuilleumier", "Ludmila Chistoserdova", "Ming-Chun Lee", "Françoise Bringel", "Aurélie Lajus", "Yang Zhou", "Benjamin Gourion", "Valérie Barbe", "Jean Chang", "Stéphane Cruveiller", "Carole Dossat", "Will Gillett", "Christelle Gruffaz", "Eric Haugen", "Edith Hourcade", "Ruth Levy", "Sophie Mangenot", "Emilie Muller", "Thierry Nadalig", "Marco Pagni", "Christian Penny", "Rémi Peyraud", "David G. Robinson", "David Roche", "Zoé Rouy", "Channakhone Saenampechek", "Grégory Salvignol", "David Vallenet", "Zaining Wu", "Christopher J. Marx", "Julia A. Vorholt", "Maynard V. Olson", "Rajinder Kaul", "Jean Weissenbach", "Claudine Médigue", "Mary E. Lidstrom"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0005584.t002", "stats"=>{"downloads"=>6, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Functional_classes_in_M_extorquens_AM1_and_DM4_replicons_a_/568662", "title"=>"Functional classes in <i>M. extorquens</i> AM1 and DM4 replicons <sup>a</sup>.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2009-05-18 02:24:22"}
  • {"files"=>["https://ndownloader.figshare.com/files/898430"], "description"=>"a<p>Average.</p>b<p>Defined by the algorithm Nosferatu as implemented in Mage <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0005584#pone.0005584-Vallenet1\" target=\"_blank\">[45]</a>.</p>c<p>Number of IS elements (number of IS types in brackets).</p>", "links"=>[], "tags"=>["am1"], "article_id"=>568833, "categories"=>["Biotechnology", "Microbiology", "Genetics"], "users"=>["Stéphane Vuilleumier", "Ludmila Chistoserdova", "Ming-Chun Lee", "Françoise Bringel", "Aurélie Lajus", "Yang Zhou", "Benjamin Gourion", "Valérie Barbe", "Jean Chang", "Stéphane Cruveiller", "Carole Dossat", "Will Gillett", "Christelle Gruffaz", "Eric Haugen", "Edith Hourcade", "Ruth Levy", "Sophie Mangenot", "Emilie Muller", "Thierry Nadalig", "Marco Pagni", "Christian Penny", "Rémi Peyraud", "David G. Robinson", "David Roche", "Zoé Rouy", "Channakhone Saenampechek", "Grégory Salvignol", "David Vallenet", "Zaining Wu", "Christopher J. Marx", "Julia A. Vorholt", "Maynard V. Olson", "Rajinder Kaul", "Jean Weissenbach", "Claudine Médigue", "Mary E. Lidstrom"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0005584.t001", "stats"=>{"downloads"=>2, "page_views"=>10, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Genome_statistics_for_M_extorquens_AM1_and_DM4_/568833", "title"=>"Genome statistics for <i>M. extorquens</i> AM1 and DM4.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2009-05-18 02:27:13"}

PMC Usage Stats | Further Information

  • {"scanned-page-browse"=>"0", "month"=>"1", "cited-by"=>"0", "abstract"=>"2", "full-text"=>"39", "unique-ip"=>"37", "pdf"=>"5", "year"=>"2010", "figure"=>"4", "scanned-summary"=>"0", "supp-data"=>"0"}
  • {"month"=>"2", "scanned-page-browse"=>"0", "cited-by"=>"0", "abstract"=>"1", "full-text"=>"19", "year"=>"2010", "pdf"=>"7", "unique-ip"=>"24", "figure"=>"1", "scanned-summary"=>"0", "supp-data"=>"0"}
  • {"scanned-page-browse"=>"0", "month"=>"3", "cited-by"=>"0", "abstract"=>"2", "full-text"=>"25", "unique-ip"=>"24", "pdf"=>"12", "year"=>"2010", "figure"=>"0", "scanned-summary"=>"0", "supp-data"=>"3"}
  • {"month"=>"4", "scanned-page-browse"=>"0", "cited-by"=>"2", "abstract"=>"2", "full-text"=>"35", "year"=>"2010", "pdf"=>"24", "unique-ip"=>"35", "figure"=>"5", "scanned-summary"=>"0", "supp-data"=>"1"}
  • {"scanned-page-browse"=>"0", "month"=>"5", "cited-by"=>"0", "abstract"=>"1", "full-text"=>"20", "unique-ip"=>"20", "pdf"=>"12", "year"=>"2010", "figure"=>"3", "scanned-summary"=>"0", "supp-data"=>"1"}
  • {"month"=>"6", "scanned-page-browse"=>"0", "cited-by"=>"0", "abstract"=>"2", "full-text"=>"26", "year"=>"2010", "pdf"=>"8", "unique-ip"=>"21", "figure"=>"2", "scanned-summary"=>"0", "supp-data"=>"0"}
  • {"scanned-page-browse"=>"0", "month"=>"7", "cited-by"=>"0", "abstract"=>"5", "full-text"=>"22", "unique-ip"=>"23", "pdf"=>"14", "year"=>"2010", "figure"=>"12", "scanned-summary"=>"0", "supp-data"=>"0"}
  • {"month"=>"8", "scanned-page-browse"=>"0", "cited-by"=>"0", "abstract"=>"3", "full-text"=>"32", "year"=>"2010", "pdf"=>"16", "unique-ip"=>"30", "figure"=>"0", "scanned-summary"=>"0", "supp-data"=>"0"}
  • {"scanned-page-browse"=>"0", "month"=>"9", "cited-by"=>"1", "abstract"=>"3", "full-text"=>"30", "unique-ip"=>"29", "pdf"=>"20", "year"=>"2010", "figure"=>"4", "scanned-summary"=>"0", "supp-data"=>"5"}
  • {"month"=>"10", "scanned-page-browse"=>"0", "cited-by"=>"0", "abstract"=>"1", "full-text"=>"18", "year"=>"2010", "pdf"=>"14", "unique-ip"=>"17", "figure"=>"3", "scanned-summary"=>"0", "supp-data"=>"0"}
  • {"scanned-page-browse"=>"0", "month"=>"11", "cited-by"=>"0", "abstract"=>"0", "full-text"=>"12", "unique-ip"=>"15", "pdf"=>"6", "year"=>"2010", "figure"=>"6", "scanned-summary"=>"0", "supp-data"=>"0"}
  • {"month"=>"12", "scanned-page-browse"=>"0", "cited-by"=>"1", "abstract"=>"2", "full-text"=>"27", "year"=>"2010", "pdf"=>"9", "unique-ip"=>"23", "figure"=>"23", "scanned-summary"=>"0", "supp-data"=>"3"}
  • {"scanned-page-browse"=>"0", "month"=>"1", "cited-by"=>"0", "abstract"=>"2", "full-text"=>"14", "unique-ip"=>"13", "pdf"=>"8", "year"=>"2011", "figure"=>"6", "scanned-summary"=>"0", "supp-data"=>"0"}
  • {"month"=>"2", "scanned-page-browse"=>"0", "cited-by"=>"0", "abstract"=>"1", "full-text"=>"19", "year"=>"2011", "pdf"=>"15", "unique-ip"=>"26", "figure"=>"17", "scanned-summary"=>"0", "supp-data"=>"0"}
  • {"scanned-page-browse"=>"0", "month"=>"3", "cited-by"=>"0", "abstract"=>"0", "full-text"=>"5", "unique-ip"=>"11", "pdf"=>"4", "year"=>"2011", "figure"=>"5", "scanned-summary"=>"0", "supp-data"=>"0"}
  • {"month"=>"4", "scanned-page-browse"=>"0", "cited-by"=>"0", "abstract"=>"1", "full-text"=>"10", "year"=>"2011", "pdf"=>"7", "unique-ip"=>"13", "figure"=>"11", "scanned-summary"=>"0", "supp-data"=>"0"}
  • {"scanned-page-browse"=>"0", "month"=>"5", "cited-by"=>"0", "abstract"=>"2", "full-text"=>"18", "unique-ip"=>"24", "pdf"=>"11", "year"=>"2011", "figure"=>"11", "scanned-summary"=>"0", "supp-data"=>"0"}
  • {"month"=>"6", "scanned-page-browse"=>"0", "cited-by"=>"0", "abstract"=>"2", "full-text"=>"9", "year"=>"2011", "pdf"=>"12", "unique-ip"=>"14", "figure"=>"1", "scanned-summary"=>"0", "supp-data"=>"0"}
  • {"scanned-page-browse"=>"0", "month"=>"7", "cited-by"=>"0", "abstract"=>"0", "full-text"=>"13", "unique-ip"=>"8", "pdf"=>"6", "year"=>"2011", "figure"=>"11", "scanned-summary"=>"0", "supp-data"=>"0"}
  • {"month"=>"8", "scanned-page-browse"=>"0", "cited-by"=>"0", "abstract"=>"1", "full-text"=>"9", "year"=>"2011", "pdf"=>"6", "unique-ip"=>"12", "figure"=>"3", "scanned-summary"=>"0", "supp-data"=>"1"}
  • {"scanned-page-browse"=>"0", "month"=>"9", "cited-by"=>"0", "abstract"=>"0", "full-text"=>"9", "unique-ip"=>"11", "pdf"=>"6", "year"=>"2011", "figure"=>"1", "scanned-summary"=>"0", "supp-data"=>"0"}
  • {"month"=>"10", "scanned-page-browse"=>"0", "cited-by"=>"0", "abstract"=>"1", "full-text"=>"18", "year"=>"2011", "pdf"=>"5", "unique-ip"=>"18", "figure"=>"7", "scanned-summary"=>"0", "supp-data"=>"4"}
  • {"scanned-page-browse"=>"0", "month"=>"11", "cited-by"=>"0", "abstract"=>"0", "full-text"=>"18", "unique-ip"=>"19", "pdf"=>"11", "year"=>"2011", "figure"=>"6", "scanned-summary"=>"0", "supp-data"=>"0"}
  • {"month"=>"12", "scanned-page-browse"=>"0", "cited-by"=>"0", "abstract"=>"0", "full-text"=>"8", "year"=>"2011", "pdf"=>"8", "unique-ip"=>"12", "figure"=>"8", "scanned-summary"=>"0", "supp-data"=>"0"}
  • {"scanned-page-browse"=>"0", "month"=>"1", "cited-by"=>"0", "abstract"=>"0", "full-text"=>"17", "unique-ip"=>"14", "pdf"=>"8", "year"=>"2012", "figure"=>"5", "scanned-summary"=>"0", "supp-data"=>"2"}
  • {"month"=>"2", "scanned-page-browse"=>"0", "cited-by"=>"0", "abstract"=>"0", "full-text"=>"6", "year"=>"2012", "pdf"=>"1", "unique-ip"=>"6", "figure"=>"1", "scanned-summary"=>"0", "supp-data"=>"1"}
  • {"scanned-page-browse"=>"0", "month"=>"3", "cited-by"=>"0", "abstract"=>"3", "full-text"=>"16", "unique-ip"=>"17", "pdf"=>"6", "year"=>"2012", "figure"=>"4", "scanned-summary"=>"0", "supp-data"=>"1"}
  • {"month"=>"4", "scanned-page-browse"=>"0", "cited-by"=>"0", "abstract"=>"0", "full-text"=>"14", "year"=>"2012", "pdf"=>"8", "unique-ip"=>"12", "figure"=>"6", "scanned-summary"=>"0", "supp-data"=>"2"}
  • {"scanned-page-browse"=>"0", "month"=>"5", "cited-by"=>"0", "abstract"=>"1", "full-text"=>"7", "unique-ip"=>"14", "pdf"=>"7", "year"=>"2012", "figure"=>"4", "scanned-summary"=>"0", "supp-data"=>"0"}
  • {"month"=>"5", "scanned-page-browse"=>"0", "cited-by"=>"0", "abstract"=>"1", "full-text"=>"19", "year"=>"2009", "pdf"=>"17", "unique-ip"=>"19", "figure"=>"4", "scanned-summary"=>"0", "supp-data"=>"4"}
  • {"scanned-page-browse"=>"0", "month"=>"6", "cited-by"=>"0", "abstract"=>"0", "full-text"=>"57", "unique-ip"=>"53", "pdf"=>"36", "year"=>"2009", "figure"=>"11", "scanned-summary"=>"0", "supp-data"=>"0"}
  • {"month"=>"7", "scanned-page-browse"=>"0", "cited-by"=>"0", "abstract"=>"7", "full-text"=>"30", "year"=>"2009", "pdf"=>"18", "unique-ip"=>"37", "figure"=>"1", "scanned-summary"=>"0", "supp-data"=>"3"}
  • {"scanned-page-browse"=>"0", "month"=>"8", "cited-by"=>"0", "abstract"=>"3", "full-text"=>"32", "unique-ip"=>"30", "pdf"=>"19", "year"=>"2009", "figure"=>"1", "scanned-summary"=>"0", "supp-data"=>"0"}
  • {"month"=>"9", "scanned-page-browse"=>"0", "cited-by"=>"0", "abstract"=>"2", "full-text"=>"48", "year"=>"2009", "pdf"=>"24", "unique-ip"=>"46", "figure"=>"11", "scanned-summary"=>"0", "supp-data"=>"6"}
  • {"scanned-page-browse"=>"0", "month"=>"10", "cited-by"=>"0", "abstract"=>"1", "full-text"=>"14", "unique-ip"=>"14", "pdf"=>"5", "year"=>"2009", "figure"=>"1", "scanned-summary"=>"0", "supp-data"=>"0"}
  • {"month"=>"11", "scanned-page-browse"=>"0", "cited-by"=>"0", "abstract"=>"2", "full-text"=>"35", "year"=>"2009", "pdf"=>"6", "unique-ip"=>"33", "figure"=>"15", "scanned-summary"=>"0", "supp-data"=>"5"}
  • {"scanned-page-browse"=>"0", "month"=>"12", "cited-by"=>"0", "abstract"=>"0", "full-text"=>"32", "unique-ip"=>"28", "pdf"=>"5", "year"=>"2009", "figure"=>"5", "scanned-summary"=>"0", "supp-data"=>"0"}
  • {"month"=>"6", "scanned-page-browse"=>"0", "cited-by"=>"0", "abstract"=>"0", "full-text"=>"21", "year"=>"2012", "pdf"=>"7", "unique-ip"=>"15", "figure"=>"8", "scanned-summary"=>"0", "supp-data"=>"0"}
  • {"unique-ip"=>"8", "full-text"=>"7", "pdf"=>"5", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2012", "month"=>"7"}
  • {"unique-ip"=>"16", "full-text"=>"16", "pdf"=>"7", "abstract"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"4", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2012", "month"=>"8"}
  • {"unique-ip"=>"8", "full-text"=>"7", "pdf"=>"4", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"7", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2012", "month"=>"9"}
  • {"unique-ip"=>"17", "full-text"=>"18", "pdf"=>"6", "abstract"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"4", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2012", "month"=>"10"}
  • {"unique-ip"=>"11", "full-text"=>"10", "pdf"=>"6", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"6", "supp-data"=>"2", "cited-by"=>"0", "year"=>"2012", "month"=>"12"}
  • {"unique-ip"=>"19", "full-text"=>"18", "pdf"=>"6", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"3", "supp-data"=>"2", "cited-by"=>"0", "year"=>"2013", "month"=>"1"}
  • {"unique-ip"=>"19", "full-text"=>"17", "pdf"=>"7", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"4", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2013", "month"=>"3"}
  • {"unique-ip"=>"10", "full-text"=>"10", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"3", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2013", "month"=>"2"}
  • {"unique-ip"=>"12", "full-text"=>"13", "pdf"=>"4", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"4", "supp-data"=>"4", "cited-by"=>"0", "year"=>"2013", "month"=>"4"}
  • {"unique-ip"=>"15", "full-text"=>"16", "pdf"=>"4", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"5", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2012", "month"=>"11"}
  • {"unique-ip"=>"14", "full-text"=>"18", "pdf"=>"6", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"8", "supp-data"=>"4", "cited-by"=>"0", "year"=>"2013", "month"=>"5"}
  • {"unique-ip"=>"15", "full-text"=>"13", "pdf"=>"12", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"13", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2013", "month"=>"6"}
  • {"unique-ip"=>"15", "full-text"=>"27", "pdf"=>"5", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"4", "supp-data"=>"4", "cited-by"=>"0", "year"=>"2013", "month"=>"7"}
  • {"unique-ip"=>"10", "full-text"=>"13", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2013", "month"=>"8"}
  • {"unique-ip"=>"8", "full-text"=>"10", "pdf"=>"5", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2013", "month"=>"9"}
  • {"unique-ip"=>"9", "full-text"=>"11", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2013", "month"=>"10"}
  • {"unique-ip"=>"5", "full-text"=>"3", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"4", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2013", "month"=>"11"}
  • {"unique-ip"=>"8", "full-text"=>"12", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2013", "month"=>"12"}
  • {"unique-ip"=>"4", "full-text"=>"4", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2014", "month"=>"1"}
  • {"unique-ip"=>"11", "full-text"=>"12", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2014", "month"=>"2"}
  • {"unique-ip"=>"6", "full-text"=>"3", "pdf"=>"3", "abstract"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"7", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2014", "month"=>"3"}
  • {"unique-ip"=>"24", "full-text"=>"17", "pdf"=>"8", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"4", "supp-data"=>"0", "cited-by"=>"1", "year"=>"2014", "month"=>"5"}
  • {"unique-ip"=>"21", "full-text"=>"22", "pdf"=>"7", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"3", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2014", "month"=>"6"}
  • {"unique-ip"=>"8", "full-text"=>"7", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"3", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2014", "month"=>"4"}
  • {"unique-ip"=>"10", "full-text"=>"19", "pdf"=>"4", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"4"}
  • {"unique-ip"=>"20", "full-text"=>"15", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"6", "supp-data"=>"4", "cited-by"=>"2", "year"=>"2015", "month"=>"5"}
  • {"unique-ip"=>"10", "full-text"=>"9", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"5", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"6"}
  • {"unique-ip"=>"15", "full-text"=>"15", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"3", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2015", "month"=>"7"}
  • {"unique-ip"=>"15", "full-text"=>"16", "pdf"=>"9", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"4", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"3"}
  • {"unique-ip"=>"25", "full-text"=>"24", "pdf"=>"11", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"5", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2015", "month"=>"2"}
  • {"unique-ip"=>"16", "full-text"=>"14", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"15", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2015", "month"=>"8"}
  • {"unique-ip"=>"15", "full-text"=>"15", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"3", "cited-by"=>"0", "year"=>"2015", "month"=>"9"}
  • {"unique-ip"=>"20", "full-text"=>"23", "pdf"=>"9", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"3", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2015", "month"=>"10"}
  • {"unique-ip"=>"15", "full-text"=>"14", "pdf"=>"4", "abstract"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2014", "month"=>"7"}
  • {"unique-ip"=>"11", "full-text"=>"14", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2014", "month"=>"8"}
  • {"unique-ip"=>"18", "full-text"=>"12", "pdf"=>"8", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"8", "supp-data"=>"3", "cited-by"=>"0", "year"=>"2014", "month"=>"9"}
  • {"unique-ip"=>"13", "full-text"=>"12", "pdf"=>"5", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"3", "supp-data"=>"2", "cited-by"=>"0", "year"=>"2014", "month"=>"10"}
  • {"unique-ip"=>"10", "full-text"=>"8", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"8", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"2"}
  • {"unique-ip"=>"24", "full-text"=>"21", "pdf"=>"6", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"8", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2014", "month"=>"11"}
  • {"unique-ip"=>"21", "full-text"=>"27", "pdf"=>"6", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"5", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2014", "month"=>"12"}
  • {"unique-ip"=>"6", "full-text"=>"4", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"1"}
  • {"unique-ip"=>"16", "full-text"=>"12", "pdf"=>"12", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"3", "supp-data"=>"0", "cited-by"=>"4", "year"=>"2015", "month"=>"11"}
  • {"unique-ip"=>"13", "full-text"=>"9", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"8", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"12"}
  • {"unique-ip"=>"6", "full-text"=>"6", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"1"}
  • {"unique-ip"=>"23", "full-text"=>"18", "pdf"=>"12", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"6", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"3"}
  • {"unique-ip"=>"13", "full-text"=>"13", "pdf"=>"9", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"5", "supp-data"=>"3", "cited-by"=>"0", "year"=>"2016", "month"=>"4"}
  • {"unique-ip"=>"9", "full-text"=>"7", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"6", "supp-data"=>"0", "cited-by"=>"1", "year"=>"2016", "month"=>"5"}
  • {"unique-ip"=>"16", "full-text"=>"19", "pdf"=>"9", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"3", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"6"}
  • {"unique-ip"=>"12", "full-text"=>"12", "pdf"=>"5", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"0", "cited-by"=>"1", "year"=>"2016", "month"=>"7"}
  • {"unique-ip"=>"11", "full-text"=>"11", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"8"}
  • {"unique-ip"=>"17", "full-text"=>"13", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"8", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"9"}
  • {"unique-ip"=>"8", "full-text"=>"5", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"4", "supp-data"=>"2", "cited-by"=>"0", "year"=>"2016", "month"=>"10"}
  • {"unique-ip"=>"6", "full-text"=>"7", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"11"}
  • {"unique-ip"=>"12", "full-text"=>"13", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"6", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2016", "month"=>"12"}
  • {"unique-ip"=>"9", "full-text"=>"3", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"2", "year"=>"2017", "month"=>"1"}
  • {"unique-ip"=>"10", "full-text"=>"7", "pdf"=>"4", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"10", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"2"}
  • {"unique-ip"=>"5", "full-text"=>"5", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2017", "month"=>"3"}
  • {"unique-ip"=>"14", "full-text"=>"16", "pdf"=>"8", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"4"}
  • {"unique-ip"=>"11", "full-text"=>"13", "pdf"=>"4", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"3", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2017", "month"=>"5"}
  • {"unique-ip"=>"6", "full-text"=>"5", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"6"}
  • {"unique-ip"=>"9", "full-text"=>"7", "pdf"=>"4", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2017", "month"=>"7"}
  • {"unique-ip"=>"8", "full-text"=>"6", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"8", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"8"}
  • {"unique-ip"=>"16", "full-text"=>"16", "pdf"=>"9", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"5", "supp-data"=>"4", "cited-by"=>"0", "year"=>"2017", "month"=>"9"}
  • {"unique-ip"=>"26", "full-text"=>"22", "pdf"=>"4", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"30", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"10"}

Relative Metric

{"start_date"=>"2009-01-01T00:00:00Z", "end_date"=>"2009-12-31T00:00:00Z", "subject_areas"=>[{"subject_area"=>"/Biology and life sciences", "average_usage"=>[349, 614, 744, 851, 955, 1059, 1167, 1262, 1352, 1431, 1516, 1593, 1668, 1746, 1817, 1883, 1950, 2017, 2075, 2141, 2198, 2254, 2313, 2368, 2424, 2474, 2534, 2591, 2651, 2710, 2776, 2837, 2892, 2953, 3014, 3072, 3130, 3186, 3251, 3307, 3366, 3427, 3500, 3561, 3627, 3688, 3759, 3821, 3888, 3950, 4010, 4070, 4131, 4189, 4242, 4307, 4370, 4431, 4491, 4549, 4608]}, {"subject_area"=>"/Biology and life sciences/Biochemistry", "average_usage"=>[335, 600, 731, 835, 935, 1034, 1138, 1230, 1320, 1399, 1485, 1570, 1643, 1714, 1791, 1859, 1928, 1987, 2040, 2104, 2157, 2210, 2261, 2320, 2373, 2432, 2486, 2543, 2603, 2655, 2720, 2787, 2844, 2901, 2952, 3005, 3065, 3119, 3176, 3236, 3305, 3373, 3432, 3492, 3558, 3614, 3676, 3736, 3801, 3869, 3930, 3973, 4031, 4096, 4176, 4234, 4283, 4338, 4405, 4464, 4512]}, {"subject_area"=>"/Biology and life sciences/Evolutionary biology", "average_usage"=>[422, 680, 795, 921, 1012, 1113, 1216, 1296, 1396, 1468, 1545, 1617, 1701, 1770, 1872, 1951, 2013, 2071, 2118, 2171, 2251, 2290, 2345, 2401, 2471, 2528, 2576, 2634, 2702, 2776, 2840, 2897, 2962, 3046, 3101, 3141, 3222, 3292, 3342, 3436, 3483, 3533, 3604, 3662, 3804, 3843, 3919, 3979, 4043, 4119, 4170, 4198, 4285, 4336, 4402, 4455, 4522, 4607, 4649, 4668, 4713]}, {"subject_area"=>"/Biology and life sciences/Microbiology", "average_usage"=>[335, 610, 750, 871, 981, 1081, 1172, 1282, 1369, 1458, 1543, 1620, 1705, 1788, 1862, 1932, 2007, 2050, 2115, 2179, 2237, 2292, 2361, 2412, 2462, 2524, 2583, 2645, 2709, 2773, 2835, 2892, 2955, 3012, 3069, 3129, 3199, 3256, 3316, 3382, 3447, 3501, 3560, 3624, 3697, 3774, 3846, 3906, 3979, 4035, 4080, 4133, 4201, 4264, 4300, 4371, 4431, 4489, 4553, 4620, 4681]}, {"subject_area"=>"/Biology and life sciences/Molecular biology", "average_usage"=>[334, 613, 751, 863, 964, 1078, 1181, 1270, 1358, 1443, 1536, 1616, 1690, 1768, 1826, 1902, 1969, 2031, 2095, 2149, 2202, 2258, 2305, 2349, 2417, 2482, 2541, 2598, 2662, 2720, 2768, 2832, 2897, 2947, 2998, 3058, 3121, 3175, 3235, 3292, 3368, 3442, 3507, 3563, 3621, 3676, 3736, 3802, 3852, 3922, 3977, 4025, 4071, 4141, 4199, 4258, 4316, 4376, 4422, 4467, 4518]}, {"subject_area"=>"/Physical sciences/Chemistry", "average_usage"=>[303, 516, 651, 762, 853, 944, 1048, 1140, 1218, 1291, 1366, 1449, 1509, 1593, 1663, 1726, 1797, 1856, 1906, 1958, 2018, 2083, 2128, 2175, 2235, 2294, 2354, 2403, 2452, 2502, 2558, 2617, 2672, 2730, 2794, 2857, 2913, 2970, 3036, 3087, 3155, 3216, 3270, 3336, 3390, 3450, 3508, 3568, 3623, 3705, 3762, 3812, 3895, 3938, 4026, 4083, 4137, 4187, 4235, 4292, 4348]}]}
Loading … Spinner
There are currently no alerts