High Diversity of the Saliva Microbiome in Batwa Pygmies
Publication Date
August 16, 2011
Journal
PLOS ONE
Authors
Ivan Nasidze, Jing Li, Roland Schroeder, Jean L. Creasey, et al
Volume
6
Issue
8
Pages
e23352
DOI
http://doi.org/10.1371/journal.pone.0023352
Publisher URL
http://journals.plos.org/plosone/article?id=10.1371%2Fjournal.pone.0023352
PubMed
http://www.ncbi.nlm.nih.gov/pubmed/21858083
PubMed Central
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3156759
Europe PMC
http://europepmc.org/abstract/MED/21858083
Web of Science
000294125500030
Scopus
80051695033
Mendeley
http://www.mendeley.com/research/high-diversity-saliva-microbiome-batwa-pygmies
Events
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Mendeley | Further Information

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CrossRef

Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/745451"], "description"=>"<p>The data points represent averages of 1000 randomized resamplings without replacement.</p>", "links"=>[], "tags"=>["bacterial", "genera", "groups"], "article_id"=>415821, "categories"=>["Physiology", "Ecology", "Microbiology"], "users"=>["Ivan Nasidze", "Jing Li", "Roland Schroeder", "Jean L. Creasey", "Mingkun Li", "Mark Stoneking"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0023352.g003", "stats"=>{"downloads"=>1, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Rarefaction_analysis_of_the_number_of_bacterial_genera_detected_in_the_three_human_groups_as_a_function_of_the_number_of_reads_/415821", "title"=>"Rarefaction analysis of the number of bacterial genera detected in the three human groups as a function of the number of reads.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2011-08-16 01:37:01"}
  • {"files"=>["https://ndownloader.figshare.com/files/375740", "https://ndownloader.figshare.com/files/375767", "https://ndownloader.figshare.com/files/375789"], "description"=>"<div><p>We describe the saliva microbiome diversity in Batwa Pygmies, a former hunter-gatherer group from Uganda, using next-generation sequencing of partial 16S rRNA sequences. Microbial community diversity in the Batwa is significantly higher than in agricultural groups from Sierra Leone and the Democratic Republic of Congo. We found 40 microbial genera in the Batwa, which have previously not been described in the human oral cavity. The distinctive composition of the salvia microbiome of the Batwa may have been influenced by their recent different lifestyle and diet.</p> </div>", "links"=>[], "tags"=>["saliva", "microbiome", "batwa", "pygmies"], "article_id"=>134217, "categories"=>["Physiology", "Ecology", "Microbiology"], "users"=>["Ivan Nasidze", "Jing Li", "Roland Schroeder", "Jean L. Creasey", "Mingkun Li", "Mark Stoneking"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0023352.s001", "https://dx.doi.org/10.1371/journal.pone.0023352.s002", "https://dx.doi.org/10.1371/journal.pone.0023352.s003"], "stats"=>{"downloads"=>12, "page_views"=>14, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/High_Diversity_of_the_Saliva_Microbiome_in_Batwa_Pygmies/134217", "title"=>"High Diversity of the Saliva Microbiome in Batwa Pygmies", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2011-08-16 01:10:17"}
  • {"files"=>["https://ndownloader.figshare.com/files/745715"], "description"=>"<p>Color coding for each group is the same as for <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0023352#pone-0023352-g005\" target=\"_blank\">Figure 5</a>.</p>", "links"=>[], "tags"=>["scaling", "unifrac", "relationships", "individuals", "saliva", "microbiome"], "article_id"=>416077, "categories"=>["Physiology", "Ecology", "Microbiology"], "users"=>["Ivan Nasidze", "Jing Li", "Roland Schroeder", "Jean L. Creasey", "Mingkun Li", "Mark Stoneking"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0023352.g006", "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Multidimentrional_scaling_plot_based_on_UniFrac_distances_showing_relationships_among_individuals_based_on_saliva_microbiome_composition_/416077", "title"=>"Multidimentrional scaling plot based on UniFrac distances, showing relationships among individuals based on saliva microbiome composition.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2011-08-16 01:41:17"}
  • {"files"=>["https://ndownloader.figshare.com/files/745229"], "description"=>"<p>A map of sampling locations and piecharts showing the frequencies of the 15 most common microbial genera in these groups.</p>", "links"=>[], "tags"=>["sampling", "locations", "piecharts", "frequencies", "15", "microbial", "genera"], "article_id"=>415590, "categories"=>["Physiology", "Ecology", "Microbiology"], "users"=>["Ivan Nasidze", "Jing Li", "Roland Schroeder", "Jean L. Creasey", "Mingkun Li", "Mark Stoneking"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0023352.g001", "stats"=>{"downloads"=>2, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_A_map_of_sampling_locations_and_piecharts_showing_the_frequencies_of_the_15_most_common_microbial_genera_in_these_groups_/415590", "title"=>"A map of sampling locations and piecharts showing the frequencies of the 15 most common microbial genera in these groups.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2011-08-16 01:33:10"}
  • {"files"=>["https://ndownloader.figshare.com/files/745331"], "description"=>"<p>Each numbered column corresponds to a genus, with the genus name for each number indicated in <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0023352#pone.0023352.s002\" target=\"_blank\">Table S1</a>. Each row is an individual saliva sample. The abundance of each genus is indicated by the grayscale value, according to the scale at the bottom of the plot. BP – Batwa Pygmy; DRC – group from the Democratic Republic of the Congo; SL – group from Sierra Leone.</p>", "links"=>[], "tags"=>["abundance", "bacterial", "genus", "16s", "rrna"], "article_id"=>415697, "categories"=>["Physiology", "Ecology", "Microbiology"], "users"=>["Ivan Nasidze", "Jing Li", "Roland Schroeder", "Jean L. Creasey", "Mingkun Li", "Mark Stoneking"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0023352.g002", "stats"=>{"downloads"=>0, "page_views"=>1, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Heat_plot_of_the_abundance_of_each_bacterial_genus_in_each_individual_based_on_the_partial_16S_rRNA_sequences_/415697", "title"=>"Heat plot of the abundance of each bacterial genus in each individual, based on the partial 16S rRNA sequences.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2011-08-16 01:34:57"}
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  • {"files"=>["https://ndownloader.figshare.com/files/745764"], "description"=>"<p>*data from J. Li, I. Nasidze and M. Stoneking (unpublished data).</p>", "links"=>[], "tags"=>["genera"], "article_id"=>416144, "categories"=>["Physiology", "Ecology", "Microbiology"], "users"=>["Ivan Nasidze", "Jing Li", "Roland Schroeder", "Jean L. Creasey", "Mingkun Li", "Mark Stoneking"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0023352.t001", "stats"=>{"downloads"=>1, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Number_of_sequence_reads_detected_genera_and_AMOVA_/416144", "title"=>"Number of sequence reads, detected genera and AMOVA.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2011-08-16 01:42:24"}
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Relative Metric

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