Panmixia in a Fragmented and Unstable Environment: The Hydrothermal Shrimp Rimicaris exoculata Disperses Extensively along the Mid-Atlantic Ridge
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{"title"=>"Panmixia in a fragmented and unstable environment: The hydrothermal shrimp Rimicaris exoculata disperses extensively along the Mid-Atlantic ridge", "type"=>"journal", "authors"=>[{"first_name"=>"Sara", "last_name"=>"Teixeira", "scopus_author_id"=>"23986333100"}, {"first_name"=>"Ester A.", "last_name"=>"Serrão", "scopus_author_id"=>"7004093604"}, {"first_name"=>"Sophie", "last_name"=>"Arnaud-Haond", "scopus_author_id"=>"6602532118"}], "year"=>2012, "source"=>"PLoS ONE", "identifiers"=>{"doi"=>"10.1371/journal.pone.0038521", "sgr"=>"84861889411", "issn"=>"19326203", "pui"=>"364955453", "isbn"=>"1932-6203", "pmid"=>"22679511", "scopus"=>"2-s2.0-84861889411"}, "id"=>"40519a50-083f-347d-9e47-dc6d125ce374", "abstract"=>"Dispersal plays a fundamental role in the evolution and persistence of species, and especially for species inhabiting extreme, ephemeral and highly fragmented habitats as hydrothermal vents. The Mid-Atlantic Ridge endemic shrimp species Rimicaris exoculata was studied using microsatellite markers to infer connectivity along the 7100-Km range encompassing the sampled sites. Astonishingly, no genetic differentiation was found between individuals from the different geographic origins, supporting a scenario of widespread large-scale dispersal despite the habitat distance and fragmentation. We hypothesize that delayed metamorphosis associated to temperature differences or even active directed migration dependent on physical and/or chemical stimuli could explain these results and warrant further studies on adaptation and dispersal mechanisms.", "link"=>"http://www.mendeley.com/research/panmixia-fragmented-unstable-environment-hydrothermal-shrimp-rimicaris-exoculata-disperses-extensive", "reader_count"=>60, "reader_count_by_academic_status"=>{"Professor > Associate Professor"=>3, "Librarian"=>3, "Researcher"=>20, "Student > Doctoral Student"=>2, "Student > Ph. D. Student"=>15, "Other"=>1, "Student > Master"=>6, "Student > Bachelor"=>8, "Professor"=>2}, "reader_count_by_user_role"=>{"Professor > Associate Professor"=>3, "Librarian"=>3, "Researcher"=>20, "Student > Doctoral Student"=>2, "Student > Ph. D. Student"=>15, "Other"=>1, "Student > Master"=>6, "Student > Bachelor"=>8, "Professor"=>2}, "reader_count_by_subject_area"=>{"Unspecified"=>1, "Environmental Science"=>10, "Biochemistry, Genetics and Molecular Biology"=>5, "Agricultural and Biological Sciences"=>37, "Arts and Humanities"=>1, "Chemistry"=>1, "Social Sciences"=>1, "Immunology and Microbiology"=>1, "Earth and Planetary Sciences"=>3}, "reader_count_by_subdiscipline"=>{"Chemistry"=>{"Chemistry"=>1}, "Social Sciences"=>{"Social Sciences"=>1}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>1}, "Earth and Planetary Sciences"=>{"Earth and Planetary Sciences"=>3}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>37}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>5}, "Unspecified"=>{"Unspecified"=>1}, "Environmental Science"=>{"Environmental Science"=>10}, "Arts and Humanities"=>{"Arts and Humanities"=>1}}, "reader_count_by_country"=>{"Sweden"=>1, "United States"=>4, "Brazil"=>1, "South Africa"=>2, "Portugal"=>2, "Germany"=>1}, "group_count"=>2}

Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/627751"], "description"=>"<p>Distribution of the alleles found for each locus at the different hydrothermal vent sites sampled along the Mid-Atlantic Ridge and for all sampling dates. For locus Rim 9 and Rim 26 not all alleles are represented numerically underneath the respective graph, however, the allelic distribution is represented in the graphs for all alleles found. Population codes: RBW- Rainbow; LOG- Logatchev.</p>", "links"=>[], "tags"=>["genetics and genomics", "microbiology", "ecology", "marine and aquatic sciences", "Evolutionary biology"], "article_id"=>298240, "categories"=>["Inorganic Chemistry", "Ecology", "Genetics", "Microbiology", "Evolutionary Biology"], "users"=>["Sara Teixeira", "Ester A. Serrão", "Sophie Arnaud-Haond"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0038521.g001", "stats"=>{"downloads"=>1, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Allele_distributions_/298240", "title"=>"Allele distributions.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-20 04:14:18"}
  • {"files"=>["https://ndownloader.figshare.com/files/628173"], "description"=>"<p>Detailed information of geographic coordinates, cruise and depth of the hydrothermal vents sampled along the Mid-Atlantic Ridge.</p>", "links"=>[], "tags"=>["vent", "sites"], "article_id"=>298667, "categories"=>["Inorganic Chemistry", "Ecology", "Genetics", "Microbiology", "Evolutionary Biology"], "users"=>["Sara Teixeira", "Ester A. Serrão", "Sophie Arnaud-Haond"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0038521.t001", "stats"=>{"downloads"=>0, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Details_of_vent_sites_analysed_/298667", "title"=>"Details of vent sites analysed.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-20 04:16:36"}
  • {"files"=>["https://ndownloader.figshare.com/files/628014"], "description"=>"<p><i>p</i> indicates the proportion of multi-step mutations at max L(θ).</p>", "links"=>[], "tags"=>["mutation", "assuming", "single-step", "multi-step"], "article_id"=>298502, "categories"=>["Inorganic Chemistry", "Ecology", "Genetics", "Microbiology", "Evolutionary Biology"], "users"=>["Sara Teixeira", "Ester A. Serrão", "Sophie Arnaud-Haond"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0038521.t006", "stats"=>{"downloads"=>0, "page_views"=>16, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Assessment_of_mutation_model_of_6_R_exoculata_loci_assuming_a_single_step_and_a_multi_step_mutation_model_/298502", "title"=>"Assessment of mutation model of 6 <i>R.exoculata</i> loci, assuming a single-step and a multi-step mutation model.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-20 04:15:46"}
  • {"files"=>["https://ndownloader.figshare.com/files/627837"], "description"=>"<p>Three dimensional plot (presented from three different angles) of the factorial correspondence analysis for all sampled sites along the Mid-Atlantic Ridge and all sampling dates. Based on 11 microsatellite loci.</p>", "links"=>[], "tags"=>["genetics and genomics", "microbiology", "ecology", "marine and aquatic sciences", "Evolutionary biology"], "article_id"=>298324, "categories"=>["Inorganic Chemistry", "Ecology", "Genetics", "Microbiology", "Evolutionary Biology"], "users"=>["Sara Teixeira", "Ester A. Serrão", "Sophie Arnaud-Haond"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0038521.g002", "stats"=>{"downloads"=>5, "page_views"=>41, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_FCA_plot_/298324", "title"=>"FCA plot.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-20 04:14:47"}
  • {"files"=>["https://ndownloader.figshare.com/files/628145"], "description"=>"<p>Number of individuals sampled (n), mean number of alleles across loci (<i>A</i>), <i>A<sub>rich</sub></i> mean allelic richness, observed (<i>H</i><sub>O</sub>) and expected (<i>H</i><sub>E</sub>) heterozygosities and heterozygote deficiency (<i>F</i><sub>IS</sub>) all obtained on the basis of 11 microsatellite loci used. Heterozygote deficiency (<i>F</i><sub>IS</sub>) obtained using 7 microsatellite loci is also detailed. Significance levels are indicated (*p<0.05; **p<0.01 and ***p<0.001; bold numbers indicate significant values after q-value correction). n.a.- not applicable.</p>", "links"=>[], "tags"=>["sampled"], "article_id"=>298641, "categories"=>["Inorganic Chemistry", "Ecology", "Genetics", "Microbiology", "Evolutionary Biology"], "users"=>["Sara Teixeira", "Ester A. Serrão", "Sophie Arnaud-Haond"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0038521.t002", "stats"=>{"downloads"=>1, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Descriptive_statistics_of_all_sampled_locations_/298641", "title"=>"Descriptive statistics of all sampled locations.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-20 04:16:27"}
  • {"files"=>["https://ndownloader.figshare.com/files/628051"], "description"=>"<p>Donor populations are on vertical, recipient populations are on horizontal.</p>", "links"=>[], "tags"=>["generated", "migrate", "microsatellite", "mtdna", "sequences"], "article_id"=>298545, "categories"=>["Inorganic Chemistry", "Ecology", "Genetics", "Microbiology", "Evolutionary Biology"], "users"=>["Sara Teixeira", "Ester A. Serrão", "Sophie Arnaud-Haond"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0038521.t005", "stats"=>{"downloads"=>1, "page_views"=>10, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Estimation_of_M_and_generated_in_MIGRATE_analysis_of_microsatellite_data_and_mtDNA_sequences_COI_/298545", "title"=>"Estimation of <i>M</i> and θ generated in MIGRATE analysis of microsatellite data and mtDNA sequences (COI).", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-20 04:15:57"}
  • {"files"=>["https://ndownloader.figshare.com/files/628118"], "description"=>"<p>Data shown are for a standardized minimum common sample size of 7 (Logatchev) or 19 (Rainbow) individuals.</p>", "links"=>[], "tags"=>["allelic", "richness", "calculated", "temporal"], "article_id"=>298606, "categories"=>["Inorganic Chemistry", "Ecology", "Genetics", "Microbiology", "Evolutionary Biology"], "users"=>["Sara Teixeira", "Ester A. Serrão", "Sophie Arnaud-Haond"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0038521.t003", "stats"=>{"downloads"=>1, "page_views"=>30, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Mean_allelic_richness_A_rich_calculated_for_the_temporal_samples_/298606", "title"=>"Mean allelic richness (<i>A<sub>rich</sub></i>) calculated for the temporal samples.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-20 04:16:17"}
  • {"files"=>["https://ndownloader.figshare.com/files/627921"], "description"=>"<p>Graph depicting changes in effective population size over time based on mitochondrial COI sequence data of <i>Rimicaris exoculata</i>, and based on a mutation rate of 0.7% (this mutation rate may be overestimated for a deep-sea vent species when compared to coastal ones). On the y-axis <i>N</i><sub>e</sub> represents effective population size and T is generation time; on the x-axis time is represented in thousands of years (Kyr). The thick black line represents the median and the blue lines the 95% highest posterior density of the <i>N</i><sub>e</sub>T estimates.</p>", "links"=>[], "tags"=>["skyline"], "article_id"=>298411, "categories"=>["Inorganic Chemistry", "Ecology", "Genetics", "Microbiology", "Evolutionary Biology"], "users"=>["Sara Teixeira", "Ester A. Serrão", "Sophie Arnaud-Haond"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0038521.g003", "stats"=>{"downloads"=>6, "page_views"=>188, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Bayesian_skyline_plot_/298411", "title"=>"Bayesian skyline plot.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-20 04:15:17"}
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  • {"files"=>["https://ndownloader.figshare.com/files/628083"], "description"=>"<p>None of the pairwise <i>F</i><sub>ST</sub> values were significant at the 5% level.</p>", "links"=>[], "tags"=>["sampled", "locations"], "article_id"=>298578, "categories"=>["Inorganic Chemistry", "Ecology", "Genetics", "Microbiology", "Evolutionary Biology"], "users"=>["Sara Teixeira", "Ester A. Serrão", "Sophie Arnaud-Haond"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0038521.t004", "stats"=>{"downloads"=>1, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Pairwise_F_ST_between_three_sampled_locations_and_years_/298578", "title"=>"Pairwise <i>F</i><sub>ST</sub> between three sampled locations and years.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-20 04:16:07"}

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