Viral Discovery and Sequence Recovery Using DNA Microarrays
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{"title"=>"Viral discovery and sequence recovery using DNA microarrays", "type"=>"journal", "authors"=>[{"first_name"=>"David", "last_name"=>"Wang", "scopus_author_id"=>"16403747800"}, {"first_name"=>"Anatoly", "last_name"=>"Urisman", "scopus_author_id"=>"6505489507"}, {"first_name"=>"Yu Tsueng", "last_name"=>"Liu", "scopus_author_id"=>"36071758200"}, {"first_name"=>"Michael", "last_name"=>"Springer", "scopus_author_id"=>"7103099984"}, {"first_name"=>"Thomas G.", "last_name"=>"Ksiazek", "scopus_author_id"=>"7101963789"}, {"first_name"=>"Dean D.", "last_name"=>"Erdman", "scopus_author_id"=>"7005380414"}, {"first_name"=>"Elaine R.", "last_name"=>"Mardis", "scopus_author_id"=>"7003499321"}, {"first_name"=>"Matthew", "last_name"=>"Hickenbotham", "scopus_author_id"=>"6507371507"}, {"first_name"=>"Vincent", "last_name"=>"Magrini", "scopus_author_id"=>"6602548928"}, {"first_name"=>"James", "last_name"=>"Eldred", "scopus_author_id"=>"6602181124"}, {"first_name"=>"J. Phillipe", "last_name"=>"Latreille", "scopus_author_id"=>"7006495956"}, {"first_name"=>"Richard K.", "last_name"=>"Wilson", "scopus_author_id"=>"56713341900"}, {"first_name"=>"Don", "last_name"=>"Ganem", "scopus_author_id"=>"7101880208"}, {"first_name"=>"Joseph L.", "last_name"=>"DeRisi", "scopus_author_id"=>"7004334309"}], "year"=>2003, "source"=>"PLoS Biology", "identifiers"=>{"sgr"=>"4243142644", "pmid"=>"14624234", "isbn"=>"1545-7885 (Electronic)\\n1544-9173 (Linking)", "pui"=>"39112167", "issn"=>"15449173", "scopus"=>"2-s2.0-4243142644", "doi"=>"10.1371/journal.pbio.0000002"}, "id"=>"2a4ad05f-184e-30ce-a554-961a8e4620dd", "abstract"=>"Because of the constant threat posed by emerging infectious diseases and the limitations of existing approaches used to identify new pathogens, there is a great demand for new technological methods for viral discovery. We describe herein a DNA microarray-based platform for novel virus identification and characterization. Central to this approach was a DNA microarray designed to detect a wide range of known viruses as well as novel members of existing viral families; this microarray contained the most highly conserved 70mer sequences from every fully sequenced reference viral genome in GenBank. During an outbreak of severe acute respiratory syndrome (SARS) in March 2003, hybridization to this microarray revealed the presence of a previously uncharacterized coronavirus in a viral isolate cultivated from a SARS patient. To further characterize this new virus, approximately 1 kb of the unknown virus genome was cloned by physically recovering viral sequences hybridized to individual array elements. Sequencing of these fragments confirmed that the virus was indeed a new member of the coronavirus family. This combination of array hybridization followed by direct viral sequence recovery should prove to be a general strategy for the rapid identification and characterization of novel viruses and emerging infectious disease.", "link"=>"http://www.mendeley.com/research/viral-discovery-sequence-recovery-using-dna-microarrays", "reader_count"=>224, "reader_count_by_academic_status"=>{"Unspecified"=>5, "Professor > Associate Professor"=>22, "Researcher"=>79, "Student > Doctoral Student"=>9, "Student > Ph. D. Student"=>39, "Student > Postgraduate"=>6, "Student > Master"=>22, "Other"=>7, "Student > Bachelor"=>14, "Lecturer"=>1, "Lecturer > Senior Lecturer"=>4, "Professor"=>16}, "reader_count_by_user_role"=>{"Unspecified"=>5, "Professor > Associate Professor"=>22, "Researcher"=>79, "Student > Doctoral Student"=>9, "Student > Ph. D. Student"=>39, "Student > Postgraduate"=>6, "Student > Master"=>22, "Other"=>7, "Student > Bachelor"=>14, "Lecturer"=>1, "Lecturer > Senior Lecturer"=>4, "Professor"=>16}, "reader_count_by_subject_area"=>{"Unspecified"=>10, "Agricultural and Biological Sciences"=>143, "Arts and Humanities"=>1, "Veterinary Science and Veterinary Medicine"=>3, "Business, Management and Accounting"=>1, "Chemistry"=>2, "Computer Science"=>4, "Engineering"=>3, "Environmental Science"=>5, "Biochemistry, Genetics and Molecular Biology"=>14, "Mathematics"=>1, "Medicine and Dentistry"=>23, "Neuroscience"=>2, "Pharmacology, Toxicology and Pharmaceutical Science"=>2, "Physics and Astronomy"=>2, "Immunology and Microbiology"=>8}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>23}, "Physics and Astronomy"=>{"Physics and Astronomy"=>2}, "Mathematics"=>{"Mathematics"=>1}, "Unspecified"=>{"Unspecified"=>10}, "Environmental Science"=>{"Environmental Science"=>5}, "Pharmacology, Toxicology and Pharmaceutical Science"=>{"Pharmacology, Toxicology and Pharmaceutical Science"=>2}, "Arts and Humanities"=>{"Arts and Humanities"=>1}, "Engineering"=>{"Engineering"=>3}, "Chemistry"=>{"Chemistry"=>2}, "Neuroscience"=>{"Neuroscience"=>2}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>8}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>143}, "Computer Science"=>{"Computer Science"=>4}, "Business, Management and Accounting"=>{"Business, Management and Accounting"=>1}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>14}, "Veterinary Science and Veterinary Medicine"=>{"Veterinary Science and Veterinary Medicine"=>3}}, "reader_count_by_country"=>{"Colombia"=>1, "United States"=>10, "Philippines"=>1, "United Kingdom"=>2, "Kenya"=>1, "Portugal"=>2, "Spain"=>1, "India"=>1, "Canada"=>1, "Austria"=>1, "China"=>1, "Denmark"=>1, "Brazil"=>4, "Mexico"=>1, "Australia"=>2, "Chile"=>1, "Germany"=>2}, "group_count"=>15}

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Figshare

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  • {"files"=>["https://ndownloader.figshare.com/files/473903", "https://ndownloader.figshare.com/files/473936", "https://ndownloader.figshare.com/files/473953", "https://ndownloader.figshare.com/files/473966", "https://ndownloader.figshare.com/files/473975"], "description"=>"<div><p>Because of the constant threat posed by emerging infectious diseases and the limitations of existing approaches used to identify new pathogens, there is a great demand for new technological methods for viral discovery. We describe herein a DNA microarray-based platform for novel virus identification and characterization. Central to this approach was a DNA microarray designed to detect a wide range of known viruses as well as novel members of existing viral families; this microarray contained the most highly conserved 70mer sequences from every fully sequenced reference viral genome in GenBank. During an outbreak of severe acute respiratory syndrome (SARS) in March 2003, hybridization to this microarray revealed the presence of a previously uncharacterized coronavirus in a viral isolate cultivated from a SARS patient. To further characterize this new virus, approximately 1 kb of the unknown virus genome was cloned by physically recovering viral sequences hybridized to individual array elements. Sequencing of these fragments confirmed that the virus was indeed a new member of the coronavirus family. This combination of array hybridization followed by direct viral sequence recovery should prove to be a general strategy for the rapid identification and characterization of novel viruses and emerging infectious disease.</p> </div>", "links"=>[], "tags"=>["viral", "dna", "microarrays"], "article_id"=>153382, "categories"=>["Cancer", "Biotechnology", "Genetics"], "users"=>["David Wang", "Anatoly Urisman", "Yu-Tsueng Liu", "Michael Springer", "Thomas G Ksiazek", "Dean D Erdman", "Elaine R Mardis", "Matthew Hickenbotham", "Vincent Magrini", "James Eldred", "J. Phillipe Latreille", "Richard K Wilson", "Don Ganem", "Joseph L DeRisi"], "doi"=>["https://dx.doi.org/10.1371/journal.pbio.0000002.sd001", "https://dx.doi.org/10.1371/journal.pbio.0000002.sd002", "https://dx.doi.org/10.1371/journal.pbio.0000002.sd003", "https://dx.doi.org/10.1371/journal.pbio.0000002.st001", "https://dx.doi.org/10.1371/journal.pbio.0000002.st002"], "stats"=>{"downloads"=>44, "page_views"=>14, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Viral_Discovery_and_Sequence_Recovery_Using_DNA_Microarrays/153382", "title"=>"Viral Discovery and Sequence Recovery Using DNA Microarrays", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-01-20 11:41:24"}
  • {"files"=>["https://ndownloader.figshare.com/files/964334"], "description"=>"<p>Hybridized viral sequences were physically scraped from a DNA microarray spot, amplified, cloned, and subsequently sequenced.</p>", "links"=>[], "tags"=>["dna", "sequencing"], "article_id"=>634261, "categories"=>["Virology", "Biotechnology", "Genetics", "Infectious Diseases"], "users"=>["David Wang", "Anatoly Urisman", "Yu-Tsueng Liu", "Michael Springer", "Thomas G Ksiazek", "Dean D Erdman", "Elaine R Mardis", "Matthew Hickenbotham", "Vincent Magrini", "James Eldred", "J. Phillipe Latreille", "Richard K Wilson", "Don Ganem", "Joseph L DeRisi"], "doi"=>"https://dx.doi.org/10.1371/journal.pbio.0000002.g002", "stats"=>{"downloads"=>2, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Viral_DNA_Recovery_and_Sequencing_Scheme_/634261", "title"=>"Viral DNA Recovery and Sequencing Scheme", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-22 09:17:38"}

PMC Usage Stats | Further Information

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  • {"unique-ip"=>"28", "full-text"=>"27", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"3", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"12"}
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  • {"unique-ip"=>"14", "full-text"=>"17", "pdf"=>"4", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2016", "month"=>"5"}
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  • {"unique-ip"=>"12", "full-text"=>"17", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"3", "supp-data"=>"6", "cited-by"=>"1", "year"=>"2017", "month"=>"5"}
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  • {"unique-ip"=>"10", "full-text"=>"9", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"5", "cited-by"=>"0", "year"=>"2017", "month"=>"7"}
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  • {"unique-ip"=>"1", "full-text"=>"1", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"2"}
  • {"unique-ip"=>"11", "full-text"=>"8", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"1", "cited-by"=>"1", "year"=>"2018", "month"=>"3"}
  • {"unique-ip"=>"13", "full-text"=>"11", "pdf"=>"4", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"1"}
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  • {"unique-ip"=>"16", "full-text"=>"19", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"6"}
  • {"unique-ip"=>"14", "full-text"=>"15", "pdf"=>"5", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"2", "cited-by"=>"0", "year"=>"2018", "month"=>"7"}
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  • {"unique-ip"=>"15", "full-text"=>"13", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"4", "cited-by"=>"0", "year"=>"2018", "month"=>"11"}
  • {"unique-ip"=>"11", "full-text"=>"14", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"8", "cited-by"=>"0", "year"=>"2018", "month"=>"12"}
  • {"unique-ip"=>"11", "full-text"=>"11", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"2"}
  • {"unique-ip"=>"7", "full-text"=>"8", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"3"}
  • {"unique-ip"=>"9", "full-text"=>"9", "pdf"=>"5", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"2", "cited-by"=>"0", "year"=>"2019", "month"=>"4"}
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  • {"unique-ip"=>"8", "full-text"=>"8", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2019", "month"=>"8"}
  • {"unique-ip"=>"12", "full-text"=>"12", "pdf"=>"5", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2019", "month"=>"9"}
  • {"unique-ip"=>"18", "full-text"=>"21", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"4", "cited-by"=>"0", "year"=>"2019", "month"=>"10"}
  • {"unique-ip"=>"25", "full-text"=>"16", "pdf"=>"14", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"12"}
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Relative Metric

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