Genetic Signature of Anthropogenic Population Collapse in Orang-utans
Publication Date
January 24, 2006
Journal
PLOS Biology
Authors
Benoît Goossens, Lounès Chikhi, Marc Ancrenaz, Isabelle Lackman Ancrenaz, et al
Volume
4
Issue
2
Pages
e25
DOI
https://dx.plos.org/10.1371/journal.pbio.0040025
Publisher URL
http://journals.plos.org/plosbiology/article?id=10.1371%2Fjournal.pbio.0040025
PubMed
http://www.ncbi.nlm.nih.gov/pubmed/16417405
PubMed Central
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1334199
Europe PMC
http://europepmc.org/abstract/MED/16417405
Web of Science
000235342900015
Scopus
33244487793
Mendeley
http://www.mendeley.com/research/genetic-signature-anthropogenic-population-collapse-orangutans
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Mendeley | Further Information

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CrossRef

Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/960992"], "description"=>"<p>The two curves represent the posterior distributions for S1 (solid line) and S2 (dashed line) in a natural rather than a logarithmic scale. The two posterior distributions are nearly indistinguishable and clearly show that the orang-utan population collapse most likely started in the last decades. The vertical dashed and dotted lines correspond to the 95% quantile of the posterior distributions for S1 and S2, respectively. The arrows correspond to the dates of arrival of the first farmers (F) or to the start of the forest exploitation (FE). The arrival of the first hunter-gatherers would be far outside this figure on the right, some 40,000 y ago.</p>", "links"=>[], "tags"=>["ecology", "Evolutionary biology", "mathematics/statistics"], "article_id"=>630989, "categories"=>["Mathematics", "Ecology", "Evolutionary Biology"], "users"=>["Benoît Goossens", "Lounès Chikhi", "Marc Ancrenaz", "Isabelle Lackman-Ancrenaz", "Patrick Andau", "Michael W Bruford"], "doi"=>"https://dx.doi.org/10.1371/journal.pbio.0040025.g004", "stats"=>{"downloads"=>2, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Time_since_the_Population_Collapse_in_Years_/630989", "title"=>"Time since the Population Collapse (in Years)", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-22 08:54:13"}
  • {"files"=>["https://ndownloader.figshare.com/files/960838"], "description"=>"<p>The posterior distribution for the time since the population collapse is represented on a logarithmic scale. These distributions have a median around 210 y. Most of their mass is concentrated in recent years with a sharp decrease as time goes back. Indeed, 10%, 20%, 50%, 80%, and 90% of the distribution mass are below 10, 35, 210, 950, and 1,900 y, respectively. The thin and thick lines correspond to S1 and S2, respectively. The prior is shown as a dashed line, its median being 100,000 y ago (see text). The vertical dashed line corresponds to the 95% quantile of the posterior distribution. Arrows correspond to the dates of arrival of the first hunter-gatherers (HG) or farmers (F), or to the start of the forest exploitation (FE).</p>", "links"=>[], "tags"=>["ecology", "Evolutionary biology", "mathematics/statistics"], "article_id"=>630843, "categories"=>["Mathematics", "Ecology", "Evolutionary Biology"], "users"=>["Benoît Goossens", "Lounès Chikhi", "Marc Ancrenaz", "Isabelle Lackman-Ancrenaz", "Patrick Andau", "Michael W Bruford"], "doi"=>"https://dx.doi.org/10.1371/journal.pbio.0040025.g003", "stats"=>{"downloads"=>1, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Time_since_the_Population_Collapse_/630843", "title"=>"Time since the Population Collapse", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-22 08:53:09"}
  • {"files"=>["https://ndownloader.figshare.com/files/960722"], "description"=>"<p>The posterior distributions are represented in a logarithmic scale and show very little overlap, confirming that <i>N<sub>0</sub></i> is much smaller than <i>N<sub>1</sub></i>. This result holds for the two populations analysed. The thin and thick lines correspond to S1 and S2, respectively. The priors are also shown for <i>N<sub>0</sub></i> (dotted line) and <i>N<sub>1</sub></i> (dashed line).</p>", "links"=>[], "tags"=>["ecology", "Evolutionary biology", "mathematics/statistics"], "article_id"=>630724, "categories"=>["Mathematics", "Ecology", "Evolutionary Biology"], "users"=>["Benoît Goossens", "Lounès Chikhi", "Marc Ancrenaz", "Isabelle Lackman-Ancrenaz", "Patrick Andau", "Michael W Bruford"], "doi"=>"https://dx.doi.org/10.1371/journal.pbio.0040025.g002", "stats"=>{"downloads"=>0, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Ancestral_and_Present_Population_Sizes_/630724", "title"=>"Ancestral and Present Population Sizes", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-22 08:52:15"}
  • {"files"=>["https://ndownloader.figshare.com/files/960615"], "description"=>"<p>Solid curves correspond to the posterior distributions under a model of exponential population size change. Dashed curves were obtained under a model of linear change. Thin and thick lines correspond to results obtained for populations S1 and S2, respectively (see main text for details). <i>r</i> = <i>N<sub>0</sub></i>/<i>N<sub>1</sub></i> represents the ratio of present <i>(N<sub>0</sub>)</i> to past <i>(N<sub>1</sub>)</i> population size. Whichever demographic model or population is used, there is no support for positive values (increase in population size) or values close to zero (no significant change in population size). The prior distribution is shown for comparison (flat dotted line).</p>", "links"=>[], "tags"=>["ecology", "Evolutionary biology", "mathematics/statistics"], "article_id"=>630617, "categories"=>["Mathematics", "Ecology", "Evolutionary Biology"], "users"=>["Benoît Goossens", "Lounès Chikhi", "Marc Ancrenaz", "Isabelle Lackman-Ancrenaz", "Patrick Andau", "Michael W Bruford"], "doi"=>"https://dx.doi.org/10.1371/journal.pbio.0040025.g001", "stats"=>{"downloads"=>0, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Population_Size_Change_/630617", "title"=>"Population Size Change", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-22 08:51:30"}
  • {"files"=>["https://ndownloader.figshare.com/files/474338", "https://ndownloader.figshare.com/files/474384", "https://ndownloader.figshare.com/files/474441", "https://ndownloader.figshare.com/files/474501", "https://ndownloader.figshare.com/files/474574", "https://ndownloader.figshare.com/files/474636", "https://ndownloader.figshare.com/files/474687", "https://ndownloader.figshare.com/files/474755", "https://ndownloader.figshare.com/files/474791"], "description"=>"<div><p>Great ape populations are undergoing a dramatic decline, which is predicted to result in their extinction in the wild from entire regions in the near future. Recent findings have particularly focused on African apes, and have implicated multiple factors contributing to this decline, such as deforestation, hunting, and disease. Less well-publicised, but equally dramatic, has been the decline in orang-utans, whose distribution is limited to parts of Sumatra and Borneo. Using the largest-ever genetic sample from wild orang-utan populations, we show strong evidence for a recent demographic collapse in North Eastern Borneo and demonstrate that this signature is independent of the mutation and demographic models used. This is the first demonstration that genetic data can detect and quantify the effect of recent, human-induced deforestation and habitat fragmentation on an endangered species. Because current demographic collapses are usually confounded by ancient events, this suggests a much more dramatic decline than demographic data alone and emphasises the need for major conservation efforts.</p> </div>", "links"=>[], "tags"=>["anthropogenic", "orang-utans"], "article_id"=>153466, "categories"=>["Mathematics", "Ecology", "Evolutionary Biology"], "users"=>["Benoît Goossens", "Lounès Chikhi", "Marc Ancrenaz", "Isabelle Lackman-Ancrenaz", "Patrick Andau", "Michael W Bruford"], "doi"=>["https://dx.doi.org/10.1371/journal.pbio.0040025.sg001", "https://dx.doi.org/10.1371/journal.pbio.0040025.sg002", "https://dx.doi.org/10.1371/journal.pbio.0040025.st001", "https://dx.doi.org/10.1371/journal.pbio.0040025.st002", "https://dx.doi.org/10.1371/journal.pbio.0040025.st003", "https://dx.doi.org/10.1371/journal.pbio.0040025.st004", "https://dx.doi.org/10.1371/journal.pbio.0040025.st005", "https://dx.doi.org/10.1371/journal.pbio.0040025.st006", "https://dx.doi.org/10.1371/journal.pbio.0040025.st007"], "stats"=>{"downloads"=>43, "page_views"=>14, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Genetic_Signature_of_Anthropogenic_Population_Collapse_in_Orang_utans/153466", "title"=>"Genetic Signature of Anthropogenic Population Collapse in Orang-utans", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2006-01-24 00:57:46"}

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Relative Metric

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