Identification of Mechanosensitive Genes during Embryonic Bone Formation
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{"title"=>"Identification of mechanosensitive genes during embryonic bone formation", "type"=>"journal", "authors"=>[{"first_name"=>"Niamh C.", "last_name"=>"Nowlan", "scopus_author_id"=>"8520007200"}, {"first_name"=>"Patrick J.", "last_name"=>"Prendergast", "scopus_author_id"=>"7005053686"}, {"first_name"=>"Paula", "last_name"=>"Murphy", "scopus_author_id"=>"7401685336"}], "year"=>2008, "source"=>"PLoS Computational Biology", "identifiers"=>{"sgr"=>"58149157903", "doi"=>"10.1371/journal.pcbi.1000250", "issn"=>"1553734X", "pui"=>"354027877", "isbn"=>"1553-7358 (Electronic)", "pmid"=>"19112485", "scopus"=>"2-s2.0-58149157903"}, "id"=>"0a4868e1-0b0b-30b1-b2b3-140dbf6cae16", "abstract"=>"Although it is known that mechanical forces are needed for normal bone development, the current understanding of how biophysical stimuli are interpreted by and integrated with genetic regulatory mechanisms is limited. Mechanical forces are thought to be mediated in cells by \"mechanosensitive\" genes, but it is a challenge to demonstrate that the genetic regulation of the biological system is dependant on particular mechanical forces in vivo. We propose a new means of selecting candidate mechanosensitive genes by comparing in vivo gene expression patterns with patterns of biophysical stimuli, computed using finite element analysis. In this study, finite element analyses of the avian embryonic limb were performed using anatomically realistic rudiment and muscle morphologies, and patterns of biophysical stimuli were compared with the expression patterns of four candidate mechanosensitive genes integral to bone development. The expression patterns of two genes, Collagen X (ColX) and Indian hedgehog (Ihh), were shown to colocalise with biophysical stimuli induced by embryonic muscle contractions, identifying them as potentially being involved in the mechanoregulation of bone formation. An altered mechanical environment was induced in the embryonic chick, where a neuromuscular blocking agent was administered in ovo to modify skeletal muscle contractions. Finite element analyses predicted dramatic changes in levels and patterns of biophysical stimuli, and a number of immobilised specimens exhibited differences in ColX and Ihh expression. The results obtained indicate that computationally derived patterns of biophysical stimuli can be used to inform a directed search for genes that may play a mechanoregulatory role in particular in vivo events or processes. Furthermore, the experimental data demonstrate that ColX and Ihh are involved in mechanoregulatory pathways and may be key mediators in translating information from the mechanical environment to the molecular regulation of bone formation in the embryo.", "link"=>"http://www.mendeley.com/research/identification-mechanosensitive-genes-during-embryonic-bone-formation", "reader_count"=>44, "reader_count_by_academic_status"=>{"Professor > Associate Professor"=>1, "Researcher"=>11, "Student > Doctoral Student"=>2, "Student > Ph. D. Student"=>10, "Student > Postgraduate"=>2, "Student > Master"=>7, "Other"=>2, "Student > Bachelor"=>3, "Lecturer"=>1, "Professor"=>5}, "reader_count_by_user_role"=>{"Professor > Associate Professor"=>1, "Researcher"=>11, "Student > Doctoral Student"=>2, "Student > Ph. D. Student"=>10, "Student > Postgraduate"=>2, "Student > Master"=>7, "Other"=>2, "Student > Bachelor"=>3, "Lecturer"=>1, "Professor"=>5}, "reader_count_by_subject_area"=>{"Engineering"=>9, "Biochemistry, Genetics and Molecular Biology"=>4, "Nursing and Health Professions"=>1, "Materials Science"=>1, "Agricultural and Biological Sciences"=>20, "Medicine and Dentistry"=>3, "Arts and Humanities"=>1, "Veterinary Science and Veterinary Medicine"=>1, "Physics and Astronomy"=>1, "Chemical Engineering"=>1, "Earth and Planetary Sciences"=>2}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>9}, "Materials Science"=>{"Materials Science"=>1}, "Medicine and Dentistry"=>{"Medicine and Dentistry"=>3}, "Physics and Astronomy"=>{"Physics and Astronomy"=>1}, "Earth and Planetary Sciences"=>{"Earth and Planetary Sciences"=>2}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>20}, "Nursing and Health Professions"=>{"Nursing and Health Professions"=>1}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>4}, "Chemical Engineering"=>{"Chemical Engineering"=>1}, "Arts and Humanities"=>{"Arts and Humanities"=>1}, "Veterinary Science and Veterinary Medicine"=>{"Veterinary Science and Veterinary Medicine"=>1}}, "reader_count_by_country"=>{"Lebanon"=>1, "Canada"=>1, "Netherlands"=>1, "Italy"=>1, "France"=>1, "Spain"=>1}, "group_count"=>1}

Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/912452"], "description"=>"<p>Up is distal, down is proximal. tt: tibiotarsus, mt: metatarsals. The\n approximate location of the bone collar is indicated with a green\n line. Ihh is expressed in the hypertrophic (HH30) and\n pre-hypertrophic (HH30–32) zones (black arrowheads),\n elevated expression at the periphery highlighted with white\n arrowheads. Scale bars 1 mm.</p>", "links"=>[], "tags"=>["patterns", "sections", "avian", "hindlimb", "at", "stages", "hh32"], "article_id"=>582912, "categories"=>["Physiology", "Cell Biology", "Developmental Biology"], "users"=>["Niamh C. Nowlan", "Patrick J. Prendergast", "Paula Murphy"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1000250.g004", "stats"=>{"downloads"=>6, "page_views"=>11, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Ihh_expression_patterns_in_sections_of_the_avian_hindlimb_at_____stages_HH30_HH32_and_HH34_/582912", "title"=>"Ihh expression patterns in sections of the avian hindlimb at\n stages HH30, HH32 and HH34.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 07:16:08"}
  • {"files"=>["https://ndownloader.figshare.com/files/912810"], "description"=>"<p>Scale bars 1 mm. The extension of expression in the hypertrophic\n region is demarcated by white arrowheads; expression in the\n periosteum and perichondrium is highlighted by black arrow heads.\n B–C: ColX staining in the perichondrium is more restricted\n proximo-distally and does not extend beyond the hypertrophic\n zone.</p>", "links"=>[], "tags"=>["tibiotarsus", "and", "treated"], "article_id"=>583267, "categories"=>["Physiology", "Cell Biology", "Developmental Biology"], "users"=>["Niamh C. Nowlan", "Patrick J. Prendergast", "Paula Murphy"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1000250.g008", "stats"=>{"downloads"=>3, "page_views"=>12, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_ColX_expression_at_Day_9_in_the_tibiotarsus_in_control_A_and_____treated_B_8211_C_specimens_/583267", "title"=>"ColX expression at Day 9 in the tibiotarsus in control (A) and\n treated (B–C) specimens.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 07:18:09"}
  • {"files"=>["https://ndownloader.figshare.com/files/912205"], "description"=>"<p>In the normal analysis, muscles on the ventral aspect are active during\n the flexion contraction and muscles on the dorsal are active in the\n extension contraction. In the experimental situation, both sets of\n muscles are activated at the same time, at 75% of the load\n magnitudes of the normal situation.</p>", "links"=>[], "tags"=>["schemes", "conditions", "experimental", "finite"], "article_id"=>582662, "categories"=>["Physiology", "Cell Biology", "Developmental Biology"], "users"=>["Niamh C. Nowlan", "Patrick J. Prendergast", "Paula Murphy"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1000250.g001", "stats"=>{"downloads"=>3, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Loading_schemes_and_boundary_conditions_for_normal_and_experimental____finite_element_analyses_/582662", "title"=>"Loading schemes and boundary conditions for normal and experimental\n finite element analyses.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 07:14:45"}
  • {"files"=>["https://ndownloader.figshare.com/files/912296"], "description"=>"<p>(A) Avian hindlimb at HH34 stained with Alcian Blue to highlight\n cartilage, (B–D) ColX expression patterns in sections of\n the avian tibiotarsus at stages HH30, HH32 and HH34. ColX is\n expressed in the hypertrophic chondrocytes (white arrowheads) and in\n the perichondrium/periosteum (black arrowheads). (D) The approximate\n location of the bone collar is indicated with a green line. (E) ColX\n expression in HH34 metatarsal rudiments showing bands of expression\n in the perichondrium (arrows). Up is distal, down is proximal. Scale\n bars 1 mm.</p>", "links"=>[], "tags"=>["morphology", "colx"], "article_id"=>582762, "categories"=>["Physiology", "Cell Biology", "Developmental Biology"], "users"=>["Niamh C. Nowlan", "Patrick J. Prendergast", "Paula Murphy"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1000250.g002", "stats"=>{"downloads"=>3, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Tibiotarsal_morphology_and_ColX_expression_patterns_/582762", "title"=>"Tibiotarsal morphology and ColX expression patterns.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 07:15:21"}
  • {"files"=>["https://ndownloader.figshare.com/files/912727"], "description"=>"<p>Overall length of tibiotarsus and length of bone in tibiotarsus\n for control (no drug treatment) and immobilised (neuromuscular\n blocking agent treatment) groups harvested at days 8, 9 and 11 of\n incubation.</p>", "links"=>[], "tags"=>["tibiotarsus", "tibiotarsus", "immobilised", "blocking", "groups", "harvested", "days", "11", "of"], "article_id"=>583179, "categories"=>["Physiology", "Cell Biology", "Developmental Biology"], "users"=>["Niamh C. Nowlan", "Patrick J. Prendergast", "Paula Murphy"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1000250.g007", "stats"=>{"downloads"=>4, "page_views"=>9, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Overall_length_of_tibiotarsus_and_length_of_bone_in_tibiotarsus_____for_control_no_drug_treatment_and_immobilised_neuromuscular_____blocking_agent_treatment_groups_harvested_at_days_8_9_and_11_of_____incubation_/583179", "title"=>"Overall length of tibiotarsus and length of bone in tibiotarsus\n for control (no drug treatment) and immobilised (neuromuscular\n blocking agent treatment) groups harvested at days 8, 9 and 11 of\n incubation.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 07:17:39"}
  • {"files"=>["https://ndownloader.figshare.com/files/912917"], "description"=>"<p>Number of specimens analysed per day of harvesting for control and\n experimental groups.</p>", "links"=>[], "tags"=>["specimens", "analysed", "harvesting", "and"], "article_id"=>583372, "categories"=>["Physiology", "Cell Biology", "Developmental Biology"], "users"=>["Niamh C. Nowlan", "Patrick J. Prendergast", "Paula Murphy"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1000250.t001", "stats"=>{"downloads"=>4, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Number_of_specimens_analysed_per_day_of_harvesting_for_control_and____experimental_groups_/583372", "title"=>"Number of specimens analysed per day of harvesting for control and\n experimental groups.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-21 07:18:43"}
  • {"files"=>["https://ndownloader.figshare.com/files/912601"], "description"=>"<p>PTHrP (green) expressed in peri-articular cartilage. Ihh (red) expressed\n in pre-hypertrophic chondrocytes. ColX (black) expressed in hypertrophic\n chondrocytes (diffuse colouring), and in perichondrium/periosteum\n (dashed black line). (Right) Comparison of fluid velocity and maximum\n principal strain for normal embryos, mid-flexion (red solid line) and\n immobilised embryos in rigid paralysis (dashed blue line) at HH30, 32\n and 34, along ventral and dorsal paths. Section shown is mid-line\n longitudinal section through the rudiment.</p>", "links"=>[], "tags"=>["schematic", "mechanosensitive", "expression", "patterns", "perichondrium", "periosteum", "periosteum", "illustrated"], "article_id"=>583054, "categories"=>["Physiology", "Cell Biology", "Developmental Biology"], "users"=>["Niamh C. Nowlan", "Patrick J. Prendergast", "Paula Murphy"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1000250.g006", "stats"=>{"downloads"=>5, "page_views"=>24, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Left_Schematic_of_candidate_mechanosensitive_gene_expression____patterns_Fgfr2_yellow_expression_in_perichondrium_and_periosteum____estimated_length_of_periosteum_illustrated_with_green_arrows_/583054", "title"=>"(Left) Schematic of candidate mechanosensitive gene expression\n patterns (Fgfr2 (yellow) expression in perichondrium and periosteum\n (estimated length of periosteum illustrated with green arrows).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 07:16:58"}
  • {"files"=>["https://ndownloader.figshare.com/files/912510"], "description"=>"<p>Up is distal, down is proximal. tt: tibiotarsus, mt: metatarsals.\n PTHrP is expressed in the peri-articular cartilage (arrows). Scale\n bars 1 mm.</p>", "links"=>[], "tags"=>["patterns", "sections", "avian", "hindlimb", "at", "stages", "hh32"], "article_id"=>582967, "categories"=>["Physiology", "Cell Biology", "Developmental Biology"], "users"=>["Niamh C. Nowlan", "Patrick J. Prendergast", "Paula Murphy"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1000250.g005", "stats"=>{"downloads"=>1, "page_views"=>17, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_PTHrP_expression_patterns_in_sections_of_the_avian_hindlimb_at_____stages_HH30_HH32_and_HH34_/582967", "title"=>"PTHrP expression patterns in sections of the avian hindlimb at\n stages HH30, HH32 and HH34.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 07:16:29"}
  • {"files"=>["https://ndownloader.figshare.com/files/912384"], "description"=>"<p>Up is distal, down is proximal. tt: tibiotarsus, mt: metatarsals. The\n approximate location of the bone collar is indicated with a green\n line. FGFr2 is expressed in the perichondrium and periosteum (black\n arrowheads), and in the periarticular cartilage (white arrowheads).\n Scale bars 1 mm.</p>", "links"=>[], "tags"=>["patterns", "sections", "avian", "hindlimb", "at", "stages", "hh32"], "article_id"=>582839, "categories"=>["Physiology", "Cell Biology", "Developmental Biology"], "users"=>["Niamh C. Nowlan", "Patrick J. Prendergast", "Paula Murphy"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1000250.g003", "stats"=>{"downloads"=>3, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_FGFr2_expression_patterns_in_sections_of_the_avian_hindlimb_at_____stages_HH30_HH32_and_HH34_/582839", "title"=>"FGFr2 expression patterns in sections of the avian hindlimb at\n stages HH30, HH32 and HH34.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 07:15:47"}
  • {"files"=>["https://ndownloader.figshare.com/files/912863"], "description"=>"<p>Scale bar 1 mm. Expression in pre-hypertrophic chondrocytes is\n demarcated by arrowheads.</p>", "links"=>[], "tags"=>["tibiotarsus", "control", "immobilised"], "article_id"=>583327, "categories"=>["Physiology", "Cell Biology", "Developmental Biology"], "users"=>["Niamh C. Nowlan", "Patrick J. Prendergast", "Paula Murphy"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1000250.g009", "stats"=>{"downloads"=>0, "page_views"=>12, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Ihh_expression_at_Day_9_in_the_tibiotarsus_in_control_____non_experimental_control_pictured_and_immobilised_specimens_/583327", "title"=>"Ihh expression at Day 9 in the tibiotarsus in control\n (non-experimental control pictured) and immobilised specimens.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 07:18:27"}

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Relative Metric

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