Are There Laws of Genome Evolution?
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{"title"=>"Are there laws of genome evolution?", "type"=>"journal", "authors"=>[{"first_name"=>"Eugene V.", "last_name"=>"Koonin", "scopus_author_id"=>"36039332000"}], "year"=>2011, "source"=>"PLoS Computational Biology", "identifiers"=>{"pui"=>"362471782", "sgr"=>"80052313163", "issn"=>"1553734X", "arxiv"=>"1108.3589", "pmid"=>"21901087", "scopus"=>"2-s2.0-80052313163", "doi"=>"10.1371/journal.pcbi.1002173", "isbn"=>"1553-7358 (Electronic)\\r1553-734X (Linking)"}, "id"=>"7e9cd493-a8e9-38f5-b232-e12c8c8ddb03", "abstract"=>"Research in quantitative evolutionary genomics and systems biology led to the discovery of several universal regularities connecting genomic and molecular phenomic variables. These universals include the log-normal distribution of the evolutionary rates of orthologous genes; the power law-like distributions of paralogous family size and node degree in various biological networks; the negative correlation between a gene's sequence evolution rate and expression level; and differential scaling of functional classes of genes with genome size. The universals of genome evolution can be accounted for by simple mathematical models similar to those used in statistical physics, such as the birth-death-innovation model. These models do not explicitly incorporate selection; therefore, the observed universal regularities do not appear to be shaped by selection but rather are emergent properties of gene ensembles. Although a complete physical theory of evolutionary biology is inconceivable, the universals of genome evolution might qualify as \"laws of evolutionary genomics\" in the same sense \"law\" is understood in modern physics.", "link"=>"http://www.mendeley.com/research/laws-genome-evolution-1", "reader_count"=>318, "reader_count_by_academic_status"=>{"Unspecified"=>2, "Professor > Associate Professor"=>24, "Student > Doctoral Student"=>12, "Researcher"=>95, "Student > Ph. D. Student"=>82, "Student > Postgraduate"=>10, "Student > Master"=>27, "Other"=>10, "Student > Bachelor"=>21, "Lecturer"=>9, "Lecturer > Senior Lecturer"=>1, "Professor"=>24}, "reader_count_by_user_role"=>{"Unspecified"=>2, "Professor > Associate Professor"=>24, "Student > Doctoral Student"=>12, "Researcher"=>95, "Student > Ph. D. Student"=>82, "Student > Postgraduate"=>10, "Student > Master"=>27, "Other"=>10, "Student > Bachelor"=>21, "Lecturer"=>9, "Lecturer > Senior Lecturer"=>1, "Professor"=>24}, "reader_count_by_subject_area"=>{"Unspecified"=>6, "Agricultural and Biological Sciences"=>225, "Arts and Humanities"=>2, "Business, Management and Accounting"=>2, "Chemistry"=>3, "Computer Science"=>14, "Earth and Planetary Sciences"=>1, "Engineering"=>1, "Environmental Science"=>1, "Biochemistry, Genetics and Molecular Biology"=>29, "Mathematics"=>6, "Medicine and Dentistry"=>8, "Physics and Astronomy"=>16, "Immunology and Microbiology"=>3}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>8}, "Physics and Astronomy"=>{"Physics and Astronomy"=>16}, "Mathematics"=>{"Mathematics"=>6}, "Unspecified"=>{"Unspecified"=>6}, "Environmental Science"=>{"Environmental Science"=>1}, "Arts and Humanities"=>{"Arts and Humanities"=>2}, "Engineering"=>{"Engineering"=>1}, "Chemistry"=>{"Chemistry"=>3}, "Earth and Planetary Sciences"=>{"Earth and Planetary Sciences"=>1}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>3}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>225}, "Computer Science"=>{"Computer Science"=>14}, "Business, Management and Accounting"=>{"Business, Management and Accounting"=>2}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>29}}, "reader_count_by_country"=>{"United States"=>23, "Egypt"=>1, "Russia"=>2, "Netherlands"=>2, "Austria"=>2, "Sweden"=>3, "Iran"=>1, "China"=>1, "Brazil"=>8, "France"=>3, "Ecuador"=>1, "Colombia"=>1, "Argentina"=>1, "Japan"=>1, "United Kingdom"=>8, "Switzerland"=>1, "Spain"=>6, "India"=>1, "Canada"=>2, "Norway"=>3, "Denmark"=>1, "Mexico"=>2, "South Africa"=>1, "Italy"=>1, "Germany"=>6}, "group_count"=>8}

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/741529"], "description"=>"<p>Arrows connect each model with the universals it accounts for.</p>", "links"=>[], "tags"=>["genome", "molecular", "phenome"], "article_id"=>411909, "categories"=>["Genetics", "Evolutionary Biology"], "users"=>["Eugene V. Koonin"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1002173.g002", "stats"=>{"downloads"=>1, "page_views"=>10, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Universals_of_genome_and_molecular_phenome_evolution_and_underlying_physical_mathematical_models_/411909", "title"=>"Universals of genome and molecular phenome evolution and underlying physical/mathematical models.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-20 15:19:15"}
  • {"files"=>["https://ndownloader.figshare.com/files/741436"], "description"=>"<p>The figure shows idealized versions of universal dependencies and distributions. The scattered points show the range of characteristic variance. (A) Log-normal distribution of evolutionary rates of orthologous genes. (B) Anticorrelation between gene expression level (protein abundance) and sequence evolution rate. (C) Power law–like distribution of paralogous family size. (D) Differential scaling of functional classes of genes with the total number of genes in a genome. Three fundamental exponents are thought to exist: 0 – no dependence, typical of translation system component; 1 – linear dependence, characteristic of metabolic enzymes; 2 – quadratic dependence, characteristic of regulatory and signal transduction system components.</p>", "links"=>[], "tags"=>["genome", "molecular", "phenome"], "article_id"=>411814, "categories"=>["Genetics", "Evolutionary Biology"], "users"=>["Eugene V. Koonin"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1002173.g001", "stats"=>{"downloads"=>0, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Universals_of_genome_and_molecular_phenome_evolution_/411814", "title"=>"Universals of genome and molecular phenome evolution.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-20 15:18:44"}

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Relative Metric

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