Circular Permutation in Proteins
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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/660659"], "description"=>"<p>Algorithms for comparing pairs of circularly permuted proteins.</p>", "links"=>[], "tags"=>["comparing", "pairs", "circularly", "permuted"], "article_id"=>331146, "categories"=>["Biological Sciences", "Biochemistry"], "users"=>["Spencer Bliven", "Andreas Prlić"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1002445.t001", "stats"=>{"downloads"=>1, "page_views"=>10, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Algorithms_for_comparing_pairs_of_circularly_permuted_proteins_/331146", "title"=>"Algorithms for comparing pairs of circularly permuted proteins.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-03-29 00:19:06"}
  • {"files"=>["https://ndownloader.figshare.com/files/660562"], "description"=>"<p>Two separate genes arise (potentially from the fission of a single gene). If the genes fuse together in different orders in two orthologues, a circular permutation occurs.</p>", "links"=>[], "tags"=>["fission", "fusion", "circular"], "article_id"=>331054, "categories"=>["Biological Sciences", "Biochemistry"], "users"=>["Spencer Bliven", "Andreas Prlić"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1002445.g005", "stats"=>{"downloads"=>2, "page_views"=>12, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_fission_and_fusion_mechanism_of_circular_permutation_/331054", "title"=>"The fission and fusion mechanism of circular permutation.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-03-29 00:17:34"}
  • {"files"=>["https://ndownloader.figshare.com/files/660468"], "description"=>"<p>First, a gene is duplicated in place. Next, start and stop codons are introduced, resulting in a circularly permuted gene.</p>", "links"=>[], "tags"=>["permutation", "duplication", "producing", "circular"], "article_id"=>330960, "categories"=>["Biological Sciences", "Biochemistry"], "users"=>["Spencer Bliven", "Andreas Prlić"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1002445.g003", "stats"=>{"downloads"=>3, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_permutation_by_duplication_mechanism_for_producing_a_circular_permutation_/330960", "title"=>"The permutation by duplication mechanism for producing a circular permutation.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-03-29 00:16:00"}
  • {"files"=>["https://ndownloader.figshare.com/files/338914", "https://ndownloader.figshare.com/files/338943"], "description"=>"Circular Permutation in Proteins", "links"=>[], "tags"=>["circular", "permutation", "proteins"], "article_id"=>126995, "categories"=>["Biological Sciences", "Biochemistry"], "users"=>["Spencer Bliven", "Andreas Prlić"], "doi"=>["https://dx.doi.org/10.1371/journal.pcbi.1002445.s001", "https://dx.doi.org/10.1371/journal.pcbi.1002445.s002"], "stats"=>{"downloads"=>2, "page_views"=>12, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Circular_Permutation_in_Proteins/126995", "title"=>"Circular Permutation in Proteins", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2012-03-29 01:56:35"}
  • {"files"=>["https://ndownloader.figshare.com/files/660351"], "description"=>"<p>The first protein (outer circle) has the sequence a-b-c. After the permutation the second protein (inner circle) has the sequence c-a-b. The letters N and C indicate the location of the amino- and carboxy-termini of the protein sequences and how their positions change relative to each other.</p>", "links"=>[], "tags"=>["circular", "permutation"], "article_id"=>330839, "categories"=>["Biological Sciences", "Biochemistry"], "users"=>["Spencer Bliven", "Andreas Prlić"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1002445.g001", "stats"=>{"downloads"=>1, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Schematic_representation_of_a_circular_permutation_in_two_proteins_/330839", "title"=>"Schematic representation of a circular permutation in two proteins.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-03-29 00:13:59"}
  • {"files"=>["https://ndownloader.figshare.com/files/660411"], "description"=>"<p><a href=\"http://en.wikipedia.org/w/index.php?title=Concanavalin_a\" target=\"_blank\">Concanavalin A</a> (left), from the Protein Data Bank (<a href=\"http://en.wikipedia.org/wiki/Protein_data_bank\" target=\"_blank\">PDB</a><a href=\"http://www.rcsb.org/pdb/explore/explore.do?structureId=3cna\" target=\"_blank\">)</a>, 3cna and peanut lectin (right), from <a href=\"http://en.wikipedia.org/wiki/Protein_data_bank\" target=\"_blank\">PDB</a><a href=\"http://www.rcsb.org/pdb/explore/explore.do?structureId=2pel\" target=\"_blank\">2pel</a>, which is homologous to favin. The termini of the proteins are highlighted by blue and green spheres, and the sequence of residues is indicated by the gradient from blue (N-terminus) to green (C-terminus). The 3D fold of the two proteins is highly similar; however, the N- and C- termini are located on different positions of the protein <a href=\"http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002445#pcbi.1002445-Cunningham1\" target=\"_blank\">[1]</a>.</p>", "links"=>[], "tags"=>["proteins", "circular"], "article_id"=>330905, "categories"=>["Biological Sciences", "Biochemistry"], "users"=>["Spencer Bliven", "Andreas Prlić"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1002445.g002", "stats"=>{"downloads"=>0, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Two_proteins_that_are_related_by_a_circular_permutation_/330905", "title"=>"Two proteins that are related by a circular permutation.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-03-29 00:15:05"}
  • {"files"=>["https://ndownloader.figshare.com/files/660511"], "description"=>"<p>They could have evolved from a similar gene <a href=\"http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002445#pcbi.1002445-Ponting2\" target=\"_blank\">[15]</a>. Both consist of four alpha helices with the order of helices being permuted relative to each other.</p>", "links"=>[], "tags"=>["saposin"], "article_id"=>331002, "categories"=>["Biological Sciences", "Biochemistry"], "users"=>["Spencer Bliven", "Andreas Prlić"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1002445.g004", "stats"=>{"downloads"=>1, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Suggested_relationship_between_saposin_and_swaposin_/331002", "title"=>"Suggested relationship between saposin and swaposin.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-03-29 00:16:42"}
  • {"files"=>["https://ndownloader.figshare.com/files/660607"], "description"=>"<p>In cattle, the three domains are arranged sequentially. In the bacteria <i>E. coli</i>, <i>Rb. capsulatus</i>, and <i>R. rubrum</i>, the transhydrogenase consists of two or three subunits. Finally, transhydrogenase from the protist <i>E. tenella</i> consists of a single subunit that is circularly permuted relative to cattle transhydrogenase <a href=\"http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002445#pcbi.1002445-Hatefi1\" target=\"_blank\">[20]</a>.</p>", "links"=>[], "tags"=>["organisms"], "article_id"=>331102, "categories"=>["Biological Sciences", "Biochemistry"], "users"=>["Spencer Bliven", "Andreas Prlić"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1002445.g006", "stats"=>{"downloads"=>0, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Transhydrogenases_in_various_organisms_can_be_found_in_three_different_domain_arrangements_/331102", "title"=>"Transhydrogenases in various organisms can be found in three different domain arrangements.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-03-29 00:18:22"}

PMC Usage Stats | Further Information

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Relative Metric

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