Linear Motif-Mediated Interactions Have Contributed to the Evolution of Modularity in Complex Protein Interaction Networks
- Publication Date
- October 09, 2014
- Journal
- PLOS Computational Biology
- Authors
- Inhae Kim, Heetak Lee, Seong Kyu Han & Sanguk Kim
- Volume
- 10
- Issue
- 10
- Pages
- e1003881
- DOI
- https://dx.plos.org/10.1371/journal.pcbi.1003881
- Publisher URL
- http://journals.plos.org/ploscompbiol/article?id=10.1371%2Fjournal.pcbi.1003881
- PubMed
- http://www.ncbi.nlm.nih.gov/pubmed/25299147
- PubMed Central
- http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4191887
- Europe PMC
- http://europepmc.org/abstract/MED/25299147
- Web of Science
- 000344547900034
- Scopus
- 84908336844
- Mendeley
- http://www.mendeley.com/research/linear-motifmediated-interactions-contributed-evolution-modularity-complex-protein-interaction-netwo
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Mendeley | Further Information
{"title"=>"Linear Motif-Mediated Interactions Have Contributed to the Evolution of Modularity in Complex Protein Interaction Networks", "type"=>"journal", "authors"=>[{"first_name"=>"Inhae", "last_name"=>"Kim", "scopus_author_id"=>"55477736100"}, {"first_name"=>"Heetak", "last_name"=>"Lee", "scopus_author_id"=>"56397256200"}, {"first_name"=>"Seong Kyu", "last_name"=>"Han", "scopus_author_id"=>"56121169400"}, {"first_name"=>"Sanguk", "last_name"=>"Kim", "scopus_author_id"=>"7601602471"}], "year"=>2014, "source"=>"PLoS Computational Biology", "identifiers"=>{"sgr"=>"84908336844", "doi"=>"10.1371/journal.pcbi.1003881", "pui"=>"600311106", "issn"=>"15537358", "pmid"=>"25299147", "isbn"=>"2013018606", "scopus"=>"2-s2.0-84908336844"}, "id"=>"c231f67b-bae6-3f41-9e6b-04d76ae75f41", "abstract"=>"The modular architecture of protein-protein interaction (PPI) networks is evident in diverse species with a wide range of complexity. However, the molecular components that lead to the evolution of modularity in PPI networks have not been clearly identified. Here, we show that weak domain-linear motif interactions (DLIs) are more likely to connect different biological modules than strong domain-domain interactions (DDIs). This molecular division of labor is essential for the evolution of modularity in the complex PPI networks of diverse eukaryotic species. In particular, DLIs may compensate for the reduction in module boundaries that originate from increased connections between different modules in complex PPI networks. In addition, we show that the identification of biological modules can be greatly improved by including molecular characteristics of protein interactions. Our findings suggest that transient interactions have played a unique role in shaping the architecture and modularity of biological networks over the course of evolution.", "link"=>"http://www.mendeley.com/research/linear-motifmediated-interactions-contributed-evolution-modularity-complex-protein-interaction-netwo", "reader_count"=>50, "reader_count_by_academic_status"=>{"Unspecified"=>2, "Professor > Associate Professor"=>3, "Researcher"=>14, "Student > Doctoral Student"=>6, "Student > Ph. D. Student"=>14, "Student > Master"=>6, "Student > Bachelor"=>3, "Lecturer"=>2}, "reader_count_by_user_role"=>{"Unspecified"=>2, "Professor > Associate Professor"=>3, "Researcher"=>14, "Student > Doctoral Student"=>6, "Student > Ph. D. Student"=>14, "Student > Master"=>6, "Student > Bachelor"=>3, "Lecturer"=>2}, "reader_count_by_subject_area"=>{"Unspecified"=>4, "Biochemistry, Genetics and Molecular Biology"=>11, "Nursing and Health Professions"=>1, "Agricultural and Biological Sciences"=>23, "Medicine and Dentistry"=>3, "Arts and Humanities"=>1, "Business, Management and Accounting"=>1, "Computer Science"=>6}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>3}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>23}, "Computer Science"=>{"Computer Science"=>6}, "Nursing and Health Professions"=>{"Nursing and Health Professions"=>1}, "Business, Management and Accounting"=>{"Business, Management and Accounting"=>1}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>11}, "Unspecified"=>{"Unspecified"=>4}, "Arts and Humanities"=>{"Arts and Humanities"=>1}}, "reader_count_by_country"=>{"Canada"=>3, "Argentina"=>1, "Korea (South)"=>1, "United States"=>1, "Brazil"=>1, "Slovenia"=>1, "India"=>1}, "group_count"=>2}Scopus | Further Information
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Relative Metric
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