The Quantitative Methods Boot Camp: Teaching Quantitative Thinking and Computing Skills to Graduate Students in the Life Sciences
Events
Loading … Spinner

Mendeley | Further Information

{"title"=>"The Quantitative Methods Boot Camp: Teaching Quantitative Thinking and Computing Skills to Graduate Students in the Life Sciences", "type"=>"journal", "authors"=>[{"first_name"=>"Melanie I.", "last_name"=>"Stefan", "scopus_author_id"=>"24554347800"}, {"first_name"=>"Johanna L.", "last_name"=>"Gutlerner", "scopus_author_id"=>"57071629600"}, {"first_name"=>"Richard T.", "last_name"=>"Born", "scopus_author_id"=>"7005199490"}, {"first_name"=>"Michael", "last_name"=>"Springer", "scopus_author_id"=>"7103099984"}], "year"=>2015, "source"=>"PLoS Computational Biology", "identifiers"=>{"pmid"=>"25880064", "doi"=>"10.1371/journal.pcbi.1004208", "sgr"=>"84929492826", "isbn"=>"1553-734x", "scopus"=>"2-s2.0-84929492826", "issn"=>"15537358", "pui"=>"604235756"}, "id"=>"6d45e338-3fe8-3e62-922a-afdd4808b74d", "abstract"=>"The past decade has seen a rapid increase in the ability of biologists to collect large amounts of data. It is therefore vital that research biologists acquire the necessary skills during their training to visualize, analyze, and interpret such data. To begin to meet this need, we have developed a \"boot camp\" in quantitative methods for biology graduate students at Harvard Medical School. The goal of this short, intensive course is to enable students to use computational tools to visualize and analyze data, to strengthen their computational thinking skills, and to simulate and thus extend their intuition about the behavior of complex biological systems. The boot camp teaches basic programming using biological examples from statistics, image processing, and data analysis. This integrative approach to teaching programming and quantitative reasoning motivates students' engagement by demonstrating the relevance of these skills to their work in life science laboratories. Students also have the opportunity to analyze their own data or explore a topic of interest in more detail. The class is taught with a mixture of short lectures, Socratic discussion, and in-class exercises. Students spend approximately 40% of their class time working through both short and long problems. A high instructor-to-student ratio allows students to get assistance or additional challenges when needed, thus enhancing the experience for students at all levels of mastery. Data collected from end-of-course surveys from the last five offerings of the course (between 2012 and 2014) show that students report high learning gains and feel that the course prepares them for solving quantitative and computational problems they will encounter in their research. We outline our course here which, together with the course materials freely available online under a Creative Commons License, should help to facilitate similar efforts by others.", "link"=>"http://www.mendeley.com/research/quantitative-methods-boot-camp-teaching-quantitative-thinking-computing-skills-graduate-students-lif", "reader_count"=>86, "reader_count_by_academic_status"=>{"Unspecified"=>3, "Professor > Associate Professor"=>8, "Librarian"=>2, "Student > Doctoral Student"=>5, "Researcher"=>28, "Student > Ph. D. Student"=>21, "Student > Postgraduate"=>2, "Other"=>4, "Student > Master"=>2, "Student > Bachelor"=>3, "Lecturer"=>1, "Professor"=>7}, "reader_count_by_user_role"=>{"Unspecified"=>3, "Professor > Associate Professor"=>8, "Librarian"=>2, "Student > Doctoral Student"=>5, "Researcher"=>28, "Student > Ph. D. Student"=>21, "Student > Postgraduate"=>2, "Other"=>4, "Student > Master"=>2, "Student > Bachelor"=>3, "Lecturer"=>1, "Professor"=>7}, "reader_count_by_subject_area"=>{"Unspecified"=>7, "Agricultural and Biological Sciences"=>41, "Business, Management and Accounting"=>2, "Chemistry"=>2, "Computer Science"=>5, "Environmental Science"=>1, "Biochemistry, Genetics and Molecular Biology"=>11, "Nursing and Health Professions"=>1, "Medicine and Dentistry"=>1, "Neuroscience"=>1, "Pharmacology, Toxicology and Pharmaceutical Science"=>1, "Sports and Recreations"=>1, "Physics and Astronomy"=>1, "Psychology"=>3, "Social Sciences"=>8}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>1}, "Social Sciences"=>{"Social Sciences"=>8}, "Sports and Recreations"=>{"Sports and Recreations"=>1}, "Physics and Astronomy"=>{"Physics and Astronomy"=>1}, "Psychology"=>{"Psychology"=>3}, "Unspecified"=>{"Unspecified"=>7}, "Environmental Science"=>{"Environmental Science"=>1}, "Pharmacology, Toxicology and Pharmaceutical Science"=>{"Pharmacology, Toxicology and Pharmaceutical Science"=>1}, "Chemistry"=>{"Chemistry"=>2}, "Neuroscience"=>{"Neuroscience"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>41}, "Computer Science"=>{"Computer Science"=>5}, "Business, Management and Accounting"=>{"Business, Management and Accounting"=>2}, "Nursing and Health Professions"=>{"Nursing and Health Professions"=>1}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>11}}, "reader_count_by_country"=>{"Republic of Singapore"=>1, "United States"=>4, "Egypt"=>1, "Ukraine"=>1, "United Kingdom"=>1, "Spain"=>1, "Canada"=>2, "Austria"=>1, "Turkey"=>1, "Belgium"=>1, "Norway"=>1, "Brazil"=>2, "France"=>1, "Germany"=>1}, "group_count"=>6}

Scopus | Further Information

{"@_fa"=>"true", "link"=>[{"@_fa"=>"true", "@ref"=>"self", "@href"=>"https://api.elsevier.com/content/abstract/scopus_id/84929492826"}, {"@_fa"=>"true", "@ref"=>"author-affiliation", "@href"=>"https://api.elsevier.com/content/abstract/scopus_id/84929492826?field=author,affiliation"}, {"@_fa"=>"true", "@ref"=>"scopus", "@href"=>"https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84929492826&origin=inward"}, {"@_fa"=>"true", "@ref"=>"scopus-citedby", "@href"=>"https://www.scopus.com/inward/citedby.uri?partnerID=HzOxMe3b&scp=84929492826&origin=inward"}], "prism:url"=>"https://api.elsevier.com/content/abstract/scopus_id/84929492826", "dc:identifier"=>"SCOPUS_ID:84929492826", "eid"=>"2-s2.0-84929492826", "dc:title"=>"The Quantitative Methods Boot Camp: Teaching Quantitative Thinking and Computing Skills to Graduate Students in the Life Sciences", "dc:creator"=>"Stefan M.", "prism:publicationName"=>"PLoS Computational Biology", "prism:issn"=>"1553734X", "prism:eIssn"=>"15537358", "prism:volume"=>"11", "prism:issueIdentifier"=>"4", "prism:pageRange"=>nil, "prism:coverDate"=>"2015-01-01", "prism:coverDisplayDate"=>"1 April 2015", "prism:doi"=>"10.1371/journal.pcbi.1004208", "citedby-count"=>"8", "affiliation"=>[{"@_fa"=>"true", "affilname"=>"Harvard Medical School", "affiliation-city"=>"Boston", "affiliation-country"=>"United States"}], "pubmed-id"=>"25880064", "prism:aggregationType"=>"Journal", "subtype"=>"ar", "subtypeDescription"=>"Article", "article-number"=>"e1004208", "source-id"=>"4000151810", "openaccess"=>"1", "openaccessFlag"=>true}

Facebook

  • {"url"=>"http%3A%2F%2Fjournals.plos.org%2Fploscompbiol%2Farticle%3Fid%3D10.1371%252Fjournal.pcbi.1004208", "share_count"=>15, "like_count"=>43, "comment_count"=>13, "click_count"=>0, "total_count"=>71}

Counter

  • {"month"=>"4", "year"=>"2015", "pdf_views"=>"301", "xml_views"=>"4", "html_views"=>"2516"}
  • {"month"=>"5", "year"=>"2015", "pdf_views"=>"145", "xml_views"=>"3", "html_views"=>"972"}
  • {"month"=>"6", "year"=>"2015", "pdf_views"=>"34", "xml_views"=>"2", "html_views"=>"216"}
  • {"month"=>"7", "year"=>"2015", "pdf_views"=>"25", "xml_views"=>"0", "html_views"=>"155"}
  • {"month"=>"8", "year"=>"2015", "pdf_views"=>"34", "xml_views"=>"1", "html_views"=>"140"}
  • {"month"=>"9", "year"=>"2015", "pdf_views"=>"20", "xml_views"=>"0", "html_views"=>"145"}
  • {"month"=>"10", "year"=>"2015", "pdf_views"=>"20", "xml_views"=>"0", "html_views"=>"114"}
  • {"month"=>"11", "year"=>"2015", "pdf_views"=>"8", "xml_views"=>"1", "html_views"=>"57"}
  • {"month"=>"12", "year"=>"2015", "pdf_views"=>"8", "xml_views"=>"0", "html_views"=>"52"}
  • {"month"=>"1", "year"=>"2016", "pdf_views"=>"21", "xml_views"=>"0", "html_views"=>"113"}
  • {"month"=>"2", "year"=>"2016", "pdf_views"=>"15", "xml_views"=>"0", "html_views"=>"102"}
  • {"month"=>"3", "year"=>"2016", "pdf_views"=>"14", "xml_views"=>"0", "html_views"=>"91"}
  • {"month"=>"4", "year"=>"2016", "pdf_views"=>"17", "xml_views"=>"0", "html_views"=>"70"}
  • {"month"=>"5", "year"=>"2016", "pdf_views"=>"9", "xml_views"=>"0", "html_views"=>"72"}
  • {"month"=>"6", "year"=>"2016", "pdf_views"=>"88", "xml_views"=>"0", "html_views"=>"62"}
  • {"month"=>"7", "year"=>"2016", "pdf_views"=>"39", "xml_views"=>"0", "html_views"=>"44"}
  • {"month"=>"8", "year"=>"2016", "pdf_views"=>"36", "xml_views"=>"0", "html_views"=>"50"}
  • {"month"=>"9", "year"=>"2016", "pdf_views"=>"54", "xml_views"=>"0", "html_views"=>"91"}
  • {"month"=>"10", "year"=>"2016", "pdf_views"=>"27", "xml_views"=>"0", "html_views"=>"118"}
  • {"month"=>"11", "year"=>"2016", "pdf_views"=>"4", "xml_views"=>"0", "html_views"=>"105"}
  • {"month"=>"12", "year"=>"2016", "pdf_views"=>"7", "xml_views"=>"0", "html_views"=>"119"}
  • {"month"=>"1", "year"=>"2017", "pdf_views"=>"15", "xml_views"=>"2", "html_views"=>"112"}
  • {"month"=>"2", "year"=>"2017", "pdf_views"=>"22", "xml_views"=>"0", "html_views"=>"118"}
  • {"month"=>"3", "year"=>"2017", "pdf_views"=>"21", "xml_views"=>"0", "html_views"=>"98"}
  • {"month"=>"4", "year"=>"2017", "pdf_views"=>"12", "xml_views"=>"0", "html_views"=>"73"}
  • {"month"=>"5", "year"=>"2017", "pdf_views"=>"27", "xml_views"=>"1", "html_views"=>"70"}
  • {"month"=>"6", "year"=>"2017", "pdf_views"=>"8", "xml_views"=>"0", "html_views"=>"68"}
  • {"month"=>"7", "year"=>"2017", "pdf_views"=>"6", "xml_views"=>"0", "html_views"=>"58"}
  • {"month"=>"8", "year"=>"2017", "pdf_views"=>"8", "xml_views"=>"0", "html_views"=>"59"}
  • {"month"=>"9", "year"=>"2017", "pdf_views"=>"14", "xml_views"=>"1", "html_views"=>"69"}
  • {"month"=>"10", "year"=>"2017", "pdf_views"=>"9", "xml_views"=>"0", "html_views"=>"97"}
  • {"month"=>"11", "year"=>"2017", "pdf_views"=>"25", "xml_views"=>"1", "html_views"=>"113"}
  • {"month"=>"12", "year"=>"2017", "pdf_views"=>"8", "xml_views"=>"0", "html_views"=>"74"}
  • {"month"=>"1", "year"=>"2018", "pdf_views"=>"12", "xml_views"=>"0", "html_views"=>"66"}
  • {"month"=>"2", "year"=>"2018", "pdf_views"=>"21", "xml_views"=>"0", "html_views"=>"46"}
  • {"month"=>"3", "year"=>"2018", "pdf_views"=>"35", "xml_views"=>"0", "html_views"=>"54"}
  • {"month"=>"4", "year"=>"2018", "pdf_views"=>"13", "xml_views"=>"1", "html_views"=>"39"}
  • {"month"=>"5", "year"=>"2018", "pdf_views"=>"13", "xml_views"=>"2", "html_views"=>"38"}
  • {"month"=>"6", "year"=>"2018", "pdf_views"=>"25", "xml_views"=>"5", "html_views"=>"37"}
  • {"month"=>"7", "year"=>"2018", "pdf_views"=>"17", "xml_views"=>"3", "html_views"=>"25"}
  • {"month"=>"8", "year"=>"2018", "pdf_views"=>"25", "xml_views"=>"2", "html_views"=>"45"}
  • {"month"=>"9", "year"=>"2018", "pdf_views"=>"20", "xml_views"=>"0", "html_views"=>"34"}
  • {"month"=>"10", "year"=>"2018", "pdf_views"=>"25", "xml_views"=>"2", "html_views"=>"26"}
  • {"month"=>"11", "year"=>"2018", "pdf_views"=>"26", "xml_views"=>"0", "html_views"=>"35"}
  • {"month"=>"12", "year"=>"2018", "pdf_views"=>"13", "xml_views"=>"0", "html_views"=>"21"}
  • {"month"=>"1", "year"=>"2019", "pdf_views"=>"16", "xml_views"=>"0", "html_views"=>"40"}
  • {"month"=>"2", "year"=>"2019", "pdf_views"=>"15", "xml_views"=>"0", "html_views"=>"18"}
  • {"month"=>"3", "year"=>"2019", "pdf_views"=>"15", "xml_views"=>"3", "html_views"=>"20"}
  • {"month"=>"4", "year"=>"2019", "pdf_views"=>"36", "xml_views"=>"0", "html_views"=>"23"}
  • {"month"=>"5", "year"=>"2019", "pdf_views"=>"28", "xml_views"=>"0", "html_views"=>"59"}
  • {"month"=>"6", "year"=>"2019", "pdf_views"=>"17", "xml_views"=>"1", "html_views"=>"41"}
  • {"month"=>"7", "year"=>"2019", "pdf_views"=>"17", "xml_views"=>"0", "html_views"=>"32"}
  • {"month"=>"8", "year"=>"2019", "pdf_views"=>"20", "xml_views"=>"0", "html_views"=>"17"}
  • {"month"=>"9", "year"=>"2019", "pdf_views"=>"5", "xml_views"=>"0", "html_views"=>"11"}

Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/2024040"], "description"=>"<p>Students were asked to rate their agreement with the following three questions: “This course provided a practical base and starting point for using MATLAB in my own work,” “The workshop provided me with a practical base/starting point for analyzing quantitative problems,” and “This course has increased the likelihood I will use quantitative methods in my research.” Rating was on a five-point scale (Strongly disagree to strongly agree). Data shown are pooled responses from the last four offerings of the course (Summer 2012 to Spring 2014). <i>n</i> = 141.</p>", "links"=>[], "tags"=>["research biologists", "students report", "course materials", "Socratic discussion", "data analysis", "Quantitative Methods Boot Camp", "boot camp", "Graduate Students", "Teaching Quantitative", "Harvard Medical School", "Image processing", "life science laboratories", "biology graduate students", "class time", "life sciences", "teaching programming", "Creative Commons license"], "article_id"=>1382253, "categories"=>["Biological Sciences", "Science Policy"], "users"=>["Melanie I. Stefan", "Johanna L. Gutlerner", "Richard T. Born", "Michael Springer"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1004208.g004", "stats"=>{"downloads"=>1, "page_views"=>14, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Future_impact_of_the_course_/1382253", "title"=>"Future impact of the course.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-04-16 03:04:52"}
  • {"files"=>["https://ndownloader.figshare.com/files/2024039"], "description"=>"<p>Data shown is for the Spring 2014 offering of the course. Students were asked to rate their understanding of specific skills on a five-point scale (Poor to Excellent, as above). Skills are listed in the order in which they are introduced at QMBC. <i>n</i> = 24.</p>", "links"=>[], "tags"=>["research biologists", "students report", "course materials", "Socratic discussion", "data analysis", "Quantitative Methods Boot Camp", "boot camp", "Graduate Students", "Teaching Quantitative", "Harvard Medical School", "Image processing", "life science laboratories", "biology graduate students", "class time", "life sciences", "teaching programming", "Creative Commons license"], "article_id"=>1382252, "categories"=>["Biological Sciences", "Science Policy"], "users"=>["Melanie I. Stefan", "Johanna L. Gutlerner", "Richard T. Born", "Michael Springer"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1004208.g003", "stats"=>{"downloads"=>0, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Self_assessed_understanding_of_concepts_and_skills_/1382252", "title"=>"Self-assessed understanding of concepts and skills.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-04-16 03:04:52"}
  • {"files"=>["https://ndownloader.figshare.com/files/2024036"], "description"=>"<p>Students were asked after each course to rate their overall experience on a five-point scale (Poor, Fair, Good, Very Good, or Excellent). Diverging stacked bars are centered between Fair and Good. To allow comparison between different course offerings, data for each year was normalized by the total number of respondents. Spring 2012: <i>n</i> = 37, Spring 2013: <i>n</i> = 21, Spring 2014: <i>n</i> = 24, Summer 2012: <i>n</i> = 57, Summer 2013: <i>n</i> = 43.</p>", "links"=>[], "tags"=>["research biologists", "students report", "course materials", "Socratic discussion", "data analysis", "Quantitative Methods Boot Camp", "boot camp", "Graduate Students", "Teaching Quantitative", "Harvard Medical School", "Image processing", "life science laboratories", "biology graduate students", "class time", "life sciences", "teaching programming", "Creative Commons license"], "article_id"=>1382249, "categories"=>["Biological Sciences", "Science Policy"], "users"=>["Melanie I. Stefan", "Johanna L. Gutlerner", "Richard T. Born", "Michael Springer"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1004208.g001", "stats"=>{"downloads"=>4, "page_views"=>14, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Overall_course_experience_/1382249", "title"=>"Overall course experience.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-04-16 03:04:52"}
  • {"files"=>["https://ndownloader.figshare.com/files/2024044"], "description"=>"<p>Student enrollment in QMBC, Spring 2012 to Spring 2014</p><p>Student enrollment in QMBC.</p>", "links"=>[], "tags"=>["research biologists", "students report", "course materials", "Socratic discussion", "data analysis", "Quantitative Methods Boot Camp", "boot camp", "Graduate Students", "Teaching Quantitative", "Harvard Medical School", "Image processing", "life science laboratories", "biology graduate students", "class time", "life sciences", "teaching programming", "Creative Commons license"], "article_id"=>1382257, "categories"=>["Biological Sciences", "Science Policy"], "users"=>["Melanie I. Stefan", "Johanna L. Gutlerner", "Richard T. Born", "Michael Springer"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1004208.t004", "stats"=>{"downloads"=>5, "page_views"=>26, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Student_enrollment_in_QMBC_/1382257", "title"=>"Student enrollment in QMBC.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2015-04-16 03:04:52"}
  • {"files"=>["https://ndownloader.figshare.com/files/2024042"], "description"=>"<p>Summary of the topics covered in Days 1–3 of the course, the examples and exercises, and the biological motivation.</p><p>Overview of course Days 1–3.</p>", "links"=>[], "tags"=>["research biologists", "students report", "course materials", "Socratic discussion", "data analysis", "Quantitative Methods Boot Camp", "boot camp", "Graduate Students", "Teaching Quantitative", "Harvard Medical School", "Image processing", "life science laboratories", "biology graduate students", "class time", "life sciences", "teaching programming", "Creative Commons license"], "article_id"=>1382255, "categories"=>["Biological Sciences", "Science Policy"], "users"=>["Melanie I. Stefan", "Johanna L. Gutlerner", "Richard T. Born", "Michael Springer"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1004208.t002", "stats"=>{"downloads"=>3, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Overview_of_course_Days_1_8211_3_/1382255", "title"=>"Overview of course Days 1–3.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2015-04-16 03:04:52"}
  • {"files"=>["https://ndownloader.figshare.com/files/2024043"], "description"=>"<p>Summary of the topics covered on Days 4 and 5 of the course, the examples and exercise, and the biological motivation.</p><p>Overview of course Days 4 and 5.</p>", "links"=>[], "tags"=>["research biologists", "students report", "course materials", "Socratic discussion", "data analysis", "Quantitative Methods Boot Camp", "boot camp", "Graduate Students", "Teaching Quantitative", "Harvard Medical School", "Image processing", "life science laboratories", "biology graduate students", "class time", "life sciences", "teaching programming", "Creative Commons license"], "article_id"=>1382256, "categories"=>["Biological Sciences", "Science Policy"], "users"=>["Melanie I. Stefan", "Johanna L. Gutlerner", "Richard T. Born", "Michael Springer"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1004208.t003", "stats"=>{"downloads"=>0, "page_views"=>19, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Overview_of_course_Days_4_and_5_/1382256", "title"=>"Overview of course Days 4 and 5.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2015-04-16 03:04:52"}
  • {"files"=>["https://ndownloader.figshare.com/files/2024041"], "description"=>"<p>Learning goals for QMBC, categorized into the three domains of thinking, doing, and feeling.</p><p>Learning goals for QMBC.</p>", "links"=>[], "tags"=>["research biologists", "students report", "course materials", "Socratic discussion", "data analysis", "Quantitative Methods Boot Camp", "boot camp", "Graduate Students", "Teaching Quantitative", "Harvard Medical School", "Image processing", "life science laboratories", "biology graduate students", "class time", "life sciences", "teaching programming", "Creative Commons license"], "article_id"=>1382254, "categories"=>["Biological Sciences", "Science Policy"], "users"=>["Melanie I. Stefan", "Johanna L. Gutlerner", "Richard T. Born", "Michael Springer"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1004208.t001", "stats"=>{"downloads"=>4, "page_views"=>12, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Learning_goals_for_QMBC_/1382254", "title"=>"Learning goals for QMBC.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2015-04-16 03:04:52"}
  • {"files"=>["https://ndownloader.figshare.com/files/2024037"], "description"=>"<p>In the postcourse survey, students were asked: “Rate your ability to program in MATLAB before the course,” and “Rate your ability to program in MATLAB after the course.” Answers were given on a scale from 0 (novice) to 11 (expert). Upper panel: Summer 2013, lower panel: Spring 2014. Scatter plot: Each student is represented by a circle. The diagonal represents no improvement in skill. Insert: Increase in self-reported skill (after-before). Summer 2013: <i>n</i> = 43, Spring 2014: <i>n</i> = 24.</p>", "links"=>[], "tags"=>["research biologists", "students report", "course materials", "Socratic discussion", "data analysis", "Quantitative Methods Boot Camp", "boot camp", "Graduate Students", "Teaching Quantitative", "Harvard Medical School", "Image processing", "life science laboratories", "biology graduate students", "class time", "life sciences", "teaching programming", "Creative Commons license"], "article_id"=>1382250, "categories"=>["Biological Sciences", "Science Policy"], "users"=>["Melanie I. Stefan", "Johanna L. Gutlerner", "Richard T. Born", "Michael Springer"], "doi"=>"https://dx.doi.org/10.1371/journal.pcbi.1004208.g002", "stats"=>{"downloads"=>3, "page_views"=>26, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Increase_in_self_reported_MATLAB_programming_skills_/1382250", "title"=>"Increase in self-reported MATLAB programming skills.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-04-16 03:04:52"}
  • {"files"=>["https://ndownloader.figshare.com/files/2024047", "https://ndownloader.figshare.com/files/2024048", "https://ndownloader.figshare.com/files/2024049", "https://ndownloader.figshare.com/files/2024050", "https://ndownloader.figshare.com/files/2024051", "https://ndownloader.figshare.com/files/2024052"], "description"=>"<div><p>The past decade has seen a rapid increase in the ability of biologists to collect large amounts of data. It is therefore vital that research biologists acquire the necessary skills during their training to visualize, analyze, and interpret such data. To begin to meet this need, we have developed a “boot camp” in quantitative methods for biology graduate students at Harvard Medical School. The goal of this short, intensive course is to enable students to use computational tools to visualize and analyze data, to strengthen their computational thinking skills, and to simulate and thus extend their intuition about the behavior of complex biological systems. The boot camp teaches basic programming using biological examples from statistics, image processing, and data analysis. This integrative approach to teaching programming and quantitative reasoning motivates students’ engagement by demonstrating the relevance of these skills to their work in life science laboratories. Students also have the opportunity to analyze their own data or explore a topic of interest in more detail. The class is taught with a mixture of short lectures, Socratic discussion, and in-class exercises. Students spend approximately 40% of their class time working through both short and long problems. A high instructor-to-student ratio allows students to get assistance or additional challenges when needed, thus enhancing the experience for students at all levels of mastery. Data collected from end-of-course surveys from the last five offerings of the course (between 2012 and 2014) show that students report high learning gains and feel that the course prepares them for solving quantitative and computational problems they will encounter in their research. We outline our course here which, together with the course materials freely available online under a Creative Commons License, should help to facilitate similar efforts by others.</p></div>", "links"=>[], "tags"=>["research biologists", "students report", "course materials", "Socratic discussion", "data analysis", "Quantitative Methods Boot Camp", "boot camp", "Graduate Students", "Teaching Quantitative", "Harvard Medical School", "Image processing", "life science laboratories", "biology graduate students", "class time", "life sciences", "teaching programming", "Creative Commons license"], "article_id"=>1382259, "categories"=>["Biological Sciences", "Science Policy"], "users"=>["Melanie I. Stefan", "Johanna L. Gutlerner", "Richard T. Born", "Michael Springer"], "doi"=>["https://dx.doi.org/10.1371/journal.pcbi.1004208.s001", "https://dx.doi.org/10.1371/journal.pcbi.1004208.s002", "https://dx.doi.org/10.1371/journal.pcbi.1004208.s003", "https://dx.doi.org/10.1371/journal.pcbi.1004208.s004", "https://dx.doi.org/10.1371/journal.pcbi.1004208.s005", "https://dx.doi.org/10.1371/journal.pcbi.1004208.s006"], "stats"=>{"downloads"=>7, "page_views"=>19, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_Quantitative_Methods_Boot_Camp_Teaching_Quantitative_Thinking_and_Computing_Skills_to_Graduate_Students_in_the_Life_Sciences_/1382259", "title"=>"The Quantitative Methods Boot Camp: Teaching Quantitative Thinking and Computing Skills to Graduate Students in the Life Sciences", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2015-04-16 03:04:52"}

PMC Usage Stats | Further Information

  • {"unique-ip"=>"11", "full-text"=>"13", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"4"}
  • {"unique-ip"=>"32", "full-text"=>"33", "pdf"=>"5", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"5", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"5"}
  • {"unique-ip"=>"59", "full-text"=>"37", "pdf"=>"9", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"15", "supp-data"=>"10", "cited-by"=>"0", "year"=>"2015", "month"=>"6"}
  • {"unique-ip"=>"23", "full-text"=>"19", "pdf"=>"5", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"4", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"7"}
  • {"unique-ip"=>"17", "full-text"=>"18", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"3", "supp-data"=>"3", "cited-by"=>"0", "year"=>"2015", "month"=>"8"}
  • {"unique-ip"=>"25", "full-text"=>"29", "pdf"=>"4", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"9"}
  • {"unique-ip"=>"34", "full-text"=>"33", "pdf"=>"5", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"10"}
  • {"unique-ip"=>"26", "full-text"=>"25", "pdf"=>"4", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"4", "cited-by"=>"0", "year"=>"2015", "month"=>"11"}
  • {"unique-ip"=>"22", "full-text"=>"21", "pdf"=>"7", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"5", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"12"}
  • {"unique-ip"=>"36", "full-text"=>"32", "pdf"=>"9", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"1"}
  • {"unique-ip"=>"21", "full-text"=>"19", "pdf"=>"4", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"3", "supp-data"=>"2", "cited-by"=>"1", "year"=>"2016", "month"=>"2"}
  • {"unique-ip"=>"17", "full-text"=>"16", "pdf"=>"6", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"4", "cited-by"=>"0", "year"=>"2016", "month"=>"3"}
  • {"unique-ip"=>"12", "full-text"=>"12", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"4"}
  • {"unique-ip"=>"34", "full-text"=>"37", "pdf"=>"8", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"0", "cited-by"=>"1", "year"=>"2016", "month"=>"5"}
  • {"unique-ip"=>"32", "full-text"=>"40", "pdf"=>"4", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"6"}
  • {"unique-ip"=>"32", "full-text"=>"30", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"7"}
  • {"unique-ip"=>"37", "full-text"=>"36", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"8"}
  • {"unique-ip"=>"19", "full-text"=>"18", "pdf"=>"6", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"9"}
  • {"unique-ip"=>"39", "full-text"=>"38", "pdf"=>"4", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"5", "supp-data"=>"4", "cited-by"=>"0", "year"=>"2016", "month"=>"10"}
  • {"unique-ip"=>"23", "full-text"=>"24", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"11"}
  • {"unique-ip"=>"23", "full-text"=>"29", "pdf"=>"15", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"12"}
  • {"unique-ip"=>"25", "full-text"=>"21", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"1"}
  • {"unique-ip"=>"17", "full-text"=>"16", "pdf"=>"4", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"2"}
  • {"unique-ip"=>"18", "full-text"=>"17", "pdf"=>"4", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"5", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"3"}
  • {"unique-ip"=>"5", "full-text"=>"4", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"4"}
  • {"unique-ip"=>"10", "full-text"=>"7", "pdf"=>"4", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"6", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"5"}
  • {"unique-ip"=>"12", "full-text"=>"10", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"4", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"6"}
  • {"unique-ip"=>"7", "full-text"=>"7", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"3", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"7"}
  • {"unique-ip"=>"18", "full-text"=>"16", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"5", "supp-data"=>"10", "cited-by"=>"0", "year"=>"2017", "month"=>"8"}
  • {"unique-ip"=>"26", "full-text"=>"23", "pdf"=>"5", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"9"}
  • {"unique-ip"=>"22", "full-text"=>"28", "pdf"=>"5", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"10"}
  • {"unique-ip"=>"27", "full-text"=>"28", "pdf"=>"7", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"11"}
  • {"unique-ip"=>"20", "full-text"=>"20", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"12"}
  • {"unique-ip"=>"20", "full-text"=>"20", "pdf"=>"5", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"1"}
  • {"unique-ip"=>"16", "full-text"=>"14", "pdf"=>"7", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"3"}
  • {"unique-ip"=>"15", "full-text"=>"12", "pdf"=>"5", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"1"}
  • {"unique-ip"=>"15", "full-text"=>"11", "pdf"=>"9", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"5"}
  • {"unique-ip"=>"11", "full-text"=>"13", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"4"}
  • {"unique-ip"=>"14", "full-text"=>"15", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"6"}
  • {"unique-ip"=>"28", "full-text"=>"18", "pdf"=>"14", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"2", "cited-by"=>"0", "year"=>"2018", "month"=>"7"}
  • {"unique-ip"=>"28", "full-text"=>"31", "pdf"=>"4", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"8"}
  • {"unique-ip"=>"38", "full-text"=>"38", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"2", "cited-by"=>"0", "year"=>"2018", "month"=>"9"}
  • {"unique-ip"=>"26", "full-text"=>"23", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"10"}
  • {"unique-ip"=>"30", "full-text"=>"37", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"5", "cited-by"=>"1", "year"=>"2018", "month"=>"11"}
  • {"unique-ip"=>"29", "full-text"=>"28", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"8", "supp-data"=>"0", "cited-by"=>"1", "year"=>"2018", "month"=>"12"}
  • {"unique-ip"=>"12", "full-text"=>"16", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"1", "cited-by"=>"1", "year"=>"2019", "month"=>"2"}
  • {"unique-ip"=>"16", "full-text"=>"16", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"3"}
  • {"unique-ip"=>"23", "full-text"=>"22", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"4"}
  • {"unique-ip"=>"21", "full-text"=>"24", "pdf"=>"7", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"5"}
  • {"unique-ip"=>"17", "full-text"=>"18", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"0", "cited-by"=>"1", "year"=>"2019", "month"=>"8"}

Relative Metric

{"start_date"=>"2015-01-01T00:00:00Z", "end_date"=>"2015-12-31T00:00:00Z", "subject_areas"=>[]}
Loading … Spinner
There are currently no alerts