Disentangling and modeling interactions in fish with burst-and-coast swimming reveal distinct alignment and attraction behaviors
Publication Date
January 11, 2018
Authors
Daniel S. Calovi, Alexandra Litchinko, Valentin Lecheval, Ugo Lopez, et al
Volume
14
Issue
1
Pages
e1005933
DOI
https://dx.plos.org/10.1371/journal.pcbi.1005933
Publisher URL
http://journals.plos.org/ploscompbiol/article?id=10.1371%2Fjournal.pcbi.1005933
Scopus
85041390064
Mendeley
http://www.mendeley.com/research/disentangling-modeling-interactions-fish-burstandcoast-swimming-reveal-distinct-alignment-attraction
Events
Loading … Spinner

Mendeley | Further Information

{"title"=>"Disentangling and modeling interactions in fish with burst-and-coast swimming reveal distinct alignment and attraction behaviors", "type"=>"journal", "authors"=>[{"first_name"=>"Daniel S.", "last_name"=>"Calovi", "scopus_author_id"=>"36239696400"}, {"first_name"=>"Alexandra", "last_name"=>"Litchinko", "scopus_author_id"=>"57200502470"}, {"first_name"=>"Valentin", "last_name"=>"Lecheval", "scopus_author_id"=>"56305998100"}, {"first_name"=>"Ugo", "last_name"=>"Lopez", "scopus_author_id"=>"55445803500"}, {"first_name"=>"Alfonso", "last_name"=>"Pérez Escudero", "scopus_author_id"=>"23028799900"}, {"first_name"=>"Hugues", "last_name"=>"Chaté", "scopus_author_id"=>"7004461068"}, {"first_name"=>"Clément", "last_name"=>"Sire", "scopus_author_id"=>"7003883309"}, {"first_name"=>"Guy", "last_name"=>"Theraulaz", "scopus_author_id"=>"7004591018"}], "year"=>2018, "source"=>"PLoS Computational Biology", "identifiers"=>{"issn"=>"15537358", "arxiv"=>"1703.03801", "scopus"=>"2-s2.0-85041390064", "pui"=>"620586866", "doi"=>"10.1371/journal.pcbi.1005933", "isbn"=>"1111111111", "sgr"=>"85041390064"}, "id"=>"b36084cc-1815-3098-9b5b-2e9dca090227", "abstract"=>"The development of tracking methods for automatically quantifying individual behavior and social interactions in animal groups has open up new perspectives for building quantitative and predictive models of collective behavior. In this work, we combine extensive data analyses with a modeling approach to measure, disentangle, and reconstruct the actual functional form of interactions involved in the coordination of swimming in Rummy-nose tetra (Hemigrammus rhodostomus). This species of fish performs burst-and-coast swimming behavior that consists of sudden heading changes combined with brief accelerations followed by quasi-passive, straight decelerations. We quantify the spontaneous stochastic behavior of a fish and the interactions that govern wall avoidance and the reaction to a neighboring fish, the latter by exploiting general symmetry constraints for the interactions. In contrast with previous experimental works, we find that both attraction and alignment behaviors control the reaction of fish to a neighbor. We then exploit these results to build a model of spontaneous burst-and-coast swimming and interactions of fish, with all parameters being estimated or directly measured from experiments. This model quantitatively reproduces the key features of the motion and spatial distributions observed in experiments with a single fish and with two fish. This demonstrates the power of our method that exploits large amounts of data for disentangling and fully characterizing the interactions that govern collective behaviors in animals groups.", "link"=>"http://www.mendeley.com/research/disentangling-modeling-interactions-fish-burstandcoast-swimming-reveal-distinct-alignment-attraction", "reader_count"=>8, "reader_count_by_academic_status"=>{"Researcher"=>2, "Student > Ph. D. Student"=>2, "Student > Master"=>2, "Student > Bachelor"=>2}, "reader_count_by_user_role"=>{"Researcher"=>2, "Student > Ph. D. Student"=>2, "Student > Master"=>2, "Student > Bachelor"=>2}, "reader_count_by_subject_area"=>{"Engineering"=>1, "Unspecified"=>2, "Agricultural and Biological Sciences"=>2, "Physics and Astronomy"=>1, "Social Sciences"=>1, "Sports and Recreations"=>1}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>1}, "Social Sciences"=>{"Social Sciences"=>1}, "Physics and Astronomy"=>{"Physics and Astronomy"=>1}, "Sports and Recreations"=>{"Sports and Recreations"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>2}, "Unspecified"=>{"Unspecified"=>2}}, "group_count"=>0}

Scopus | Further Information

{"@_fa"=>"true", "link"=>[{"@_fa"=>"true", "@ref"=>"self", "@href"=>"https://api.elsevier.com/content/abstract/scopus_id/85041390064"}, {"@_fa"=>"true", "@ref"=>"author-affiliation", "@href"=>"https://api.elsevier.com/content/abstract/scopus_id/85041390064?field=author,affiliation"}, {"@_fa"=>"true", "@ref"=>"scopus", "@href"=>"https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=85041390064&origin=inward"}, {"@_fa"=>"true", "@ref"=>"scopus-citedby", "@href"=>"https://www.scopus.com/inward/citedby.uri?partnerID=HzOxMe3b&scp=85041390064&origin=inward"}], "prism:url"=>"https://api.elsevier.com/content/abstract/scopus_id/85041390064", "dc:identifier"=>"SCOPUS_ID:85041390064", "eid"=>"2-s2.0-85041390064", "dc:title"=>"Disentangling and modeling interactions in fish with burst-and-coast swimming reveal distinct alignment and attraction behaviors", "dc:creator"=>"Calovi D.", "prism:publicationName"=>"PLoS Computational Biology", "prism:issn"=>"1553734X", "prism:eIssn"=>"15537358", "prism:volume"=>"14", "prism:issueIdentifier"=>"1", "prism:pageRange"=>nil, "prism:coverDate"=>"2018-01-01", "prism:coverDisplayDate"=>"January 2018", "prism:doi"=>"10.1371/journal.pcbi.1005933", "citedby-count"=>"11", "affiliation"=>[{"@_fa"=>"true", "affilname"=>"CNRS Centre National de la Recherche Scientifique", "affiliation-city"=>"Paris", "affiliation-country"=>"France"}], "pubmed-id"=>"29324853", "prism:aggregationType"=>"Journal", "subtype"=>"ar", "subtypeDescription"=>"Article", "article-number"=>"e1005933", "source-id"=>"4000151810", "openaccess"=>"1", "openaccessFlag"=>true}

Twitter

Counter

  • {"month"=>"1", "year"=>"2018", "pdf_views"=>"180", "xml_views"=>"19", "html_views"=>"1432"}
  • {"month"=>"2", "year"=>"2018", "pdf_views"=>"53", "xml_views"=>"3", "html_views"=>"108"}
  • {"month"=>"3", "year"=>"2018", "pdf_views"=>"36", "xml_views"=>"1", "html_views"=>"65"}
  • {"month"=>"4", "year"=>"2018", "pdf_views"=>"30", "xml_views"=>"0", "html_views"=>"67"}
  • {"month"=>"5", "year"=>"2018", "pdf_views"=>"36", "xml_views"=>"0", "html_views"=>"76"}
  • {"month"=>"6", "year"=>"2018", "pdf_views"=>"36", "xml_views"=>"0", "html_views"=>"60"}
  • {"month"=>"7", "year"=>"2018", "pdf_views"=>"25", "xml_views"=>"0", "html_views"=>"56"}
  • {"month"=>"8", "year"=>"2018", "pdf_views"=>"39", "xml_views"=>"3", "html_views"=>"56"}
  • {"month"=>"9", "year"=>"2018", "pdf_views"=>"22", "xml_views"=>"1", "html_views"=>"54"}
  • {"month"=>"10", "year"=>"2018", "pdf_views"=>"23", "xml_views"=>"1", "html_views"=>"95"}
  • {"month"=>"11", "year"=>"2018", "pdf_views"=>"29", "xml_views"=>"0", "html_views"=>"109"}
  • {"month"=>"12", "year"=>"2018", "pdf_views"=>"41", "xml_views"=>"0", "html_views"=>"265"}
  • {"month"=>"1", "year"=>"2019", "pdf_views"=>"49", "xml_views"=>"0", "html_views"=>"123"}
  • {"month"=>"2", "year"=>"2019", "pdf_views"=>"20", "xml_views"=>"1", "html_views"=>"50"}
  • {"month"=>"3", "year"=>"2019", "pdf_views"=>"17", "xml_views"=>"4", "html_views"=>"53"}
  • {"month"=>"4", "year"=>"2019", "pdf_views"=>"25", "xml_views"=>"0", "html_views"=>"42"}
  • {"month"=>"5", "year"=>"2019", "pdf_views"=>"26", "xml_views"=>"0", "html_views"=>"53"}
  • {"month"=>"6", "year"=>"2019", "pdf_views"=>"26", "xml_views"=>"0", "html_views"=>"37"}
  • {"month"=>"7", "year"=>"2019", "pdf_views"=>"24", "xml_views"=>"1", "html_views"=>"30"}
  • {"month"=>"8", "year"=>"2019", "pdf_views"=>"11", "xml_views"=>"0", "html_views"=>"24"}
  • {"month"=>"9", "year"=>"2019", "pdf_views"=>"48", "xml_views"=>"0", "html_views"=>"58"}
  • {"month"=>"10", "year"=>"2019", "pdf_views"=>"45", "xml_views"=>"0", "html_views"=>"76"}
  • {"month"=>"11", "year"=>"2019", "pdf_views"=>"34", "xml_views"=>"1", "html_views"=>"27"}

PMC Usage Stats

  • {"unique-ip"=>"9", "full-text"=>"8", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"3"}
  • {"unique-ip"=>"19", "full-text"=>"8", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"4", "supp-data"=>"5", "cited-by"=>"0", "year"=>"2019", "month"=>"1"}
  • {"unique-ip"=>"6", "full-text"=>"5", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"5"}
  • {"unique-ip"=>"2", "full-text"=>"2", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"4"}
  • {"unique-ip"=>"4", "full-text"=>"5", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"6"}
  • {"unique-ip"=>"3", "full-text"=>"2", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"7"}
  • {"unique-ip"=>"7", "full-text"=>"7", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"8"}
  • {"unique-ip"=>"5", "full-text"=>"5", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"9"}
  • {"unique-ip"=>"3", "full-text"=>"2", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2018", "month"=>"11"}
  • {"unique-ip"=>"4", "full-text"=>"3", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"10"}
  • {"unique-ip"=>"6", "full-text"=>"11", "pdf"=>"6", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"12"}
  • {"unique-ip"=>"21", "full-text"=>"9", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"2"}
  • {"unique-ip"=>"6", "full-text"=>"5", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"3"}
  • {"unique-ip"=>"5", "full-text"=>"6", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"4"}
  • {"unique-ip"=>"5", "full-text"=>"4", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"5"}
  • {"unique-ip"=>"7", "full-text"=>"6", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"8"}
  • {"unique-ip"=>"6", "full-text"=>"3", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"1", "year"=>"2019", "month"=>"9"}
  • {"unique-ip"=>"5", "full-text"=>"5", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"10"}
Loading … Spinner
There are currently no alerts