Combined Genome Scans for Body Stature in 6,602 European Twins: Evidence for Common Caucasian Loci
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{"title"=>"Combined genome scans for body stature in 6,602 European twins: Evidence for common caucasian loci", "type"=>"journal", "authors"=>[{"first_name"=>"Markus", "last_name"=>"Perola", "scopus_author_id"=>"7003719630"}, {"first_name"=>"Sampo", "last_name"=>"Sammalisto", "scopus_author_id"=>"8083360600"}, {"first_name"=>"Tero", "last_name"=>"Hiekkalinna", "scopus_author_id"=>"6508173267"}, {"first_name"=>"Nick G.", "last_name"=>"Martin", "scopus_author_id"=>"57195254907"}, {"first_name"=>"Peter M.", "last_name"=>"Visscher", "scopus_author_id"=>"7102668046"}, {"first_name"=>"Grant W.", "last_name"=>"Montgomery", "scopus_author_id"=>"8739667300"}, {"first_name"=>"Beben", "last_name"=>"Benyamin", "scopus_author_id"=>"16314927500"}, {"first_name"=>"Jennifer R.", "last_name"=>"Harris", "scopus_author_id"=>"24341442000"}, {"first_name"=>"Dorret", "last_name"=>"Boomsma", "scopus_author_id"=>"35378012400"}, {"first_name"=>"Gonneke", "last_name"=>"Willemsen", "scopus_author_id"=>"6701522277"}, {"first_name"=>"Jouke Jan", "last_name"=>"Hottenga", "scopus_author_id"=>"6508277910"}, {"first_name"=>"Kaare", "last_name"=>"Christensen", "scopus_author_id"=>"7202687730"}, {"first_name"=>"Kirsten Ohm", "last_name"=>"Kyvik", "scopus_author_id"=>"7005078154"}, {"first_name"=>"Thorkild I.A.", "last_name"=>"Sørensen", "scopus_author_id"=>"36043939900"}, {"first_name"=>"Nancy L.", "last_name"=>"Pedersen", "scopus_author_id"=>"7202300001"}, {"first_name"=>"Patrik K.E.", "last_name"=>"Magnusson", "scopus_author_id"=>"24756281600"}, {"first_name"=>"Tim D.", "last_name"=>"Spector", "scopus_author_id"=>"35351391300"}, {"first_name"=>"Elisabeth", "last_name"=>"Widen", "scopus_author_id"=>"56425839100"}, {"first_name"=>"Karri", "last_name"=>"Silventoinen", "scopus_author_id"=>"6603957862"}, {"first_name"=>"Jaakko", "last_name"=>"Kaprio", "scopus_author_id"=>"35379599600"}, {"first_name"=>"Aarno", "last_name"=>"Palotie", "scopus_author_id"=>"7005614368"}, {"first_name"=>"Leena", "last_name"=>"Peltonen", "scopus_author_id"=>"36051313500"}], "year"=>2007, "source"=>"PLoS Genetics", "identifiers"=>{"scopus"=>"2-s2.0-34347337689", "doi"=>"10.1371/journal.pgen.0030097", "sgr"=>"34347337689", "isbn"=>"1553-7404 (Electronic)", "pmid"=>"17559308", "issn"=>"15537390", "pui"=>"47015861"}, "id"=>"b04a41dd-7644-36d9-a09b-c4cb9671b877", "abstract"=>"Twin cohorts provide a unique advantage for investigations of the role of genetics and environment in the etiology of variation in common complex traits by reducing the variance due to environment, age, and cohort differences. The GenomEUtwin (http://www.genomeutwin.org) consortium consists of eight twin cohorts (Australian, Danish, Dutch, Finnish, Italian, Norwegian, Swedish, and United Kingdom) with the total resource of hundreds of thousands of twin pairs. We performed quantitative trait locus (QTL) analysis of one of the most heritable human complex traits, adult stature (body height) using genome-wide scans performed for 3,817 families (8,450 individuals) derived from twin cohorts from Australia, Denmark, Finland, Netherlands, Sweden, and United Kingdom with an approximate ten-centimorgan microsatellite marker map. The marker maps for different studies differed and they were combined and related to the sequence positions using software developed by us, which is publicly available (https://apps.bioinfo.helsinki.fi/software/cartographer.aspx). Variance component linkage analysis was performed with age, sex, and country of origin as covariates. The covariate adjusted heritability was 81% for stature in the pooled dataset. We found evidence for a major QTL for human stature on 8q21.3 (multipoint logarithm of the odds 3.28), and suggestive evidence for loci on Chromosomes X, 7, and 20. Some evidence of sex heterogeneity was found, however, no obvious female-specific QTLs emerged. Several cohorts contributed to the identified loci, suggesting an evolutionarily old genetic variant having effects on stature in European-based populations. To facilitate the genetic studies of stature we have also set up a website that lists all stature genome scans published and their most significant loci (http://www.genomeutwin.org/stature_gene_map.htm).", "link"=>"http://www.mendeley.com/research/combined-genome-scans-body-stature-6602-european-twins-evidence-common-caucasian-loci", "reader_count"=>70, "reader_count_by_academic_status"=>{"Unspecified"=>2, "Professor > Associate Professor"=>7, "Librarian"=>2, "Researcher"=>18, "Student > Doctoral Student"=>6, "Student > Ph. D. Student"=>10, "Student > Postgraduate"=>1, "Student > Master"=>5, "Other"=>2, "Student > Bachelor"=>6, "Lecturer"=>2, "Professor"=>9}, "reader_count_by_user_role"=>{"Unspecified"=>2, "Professor > Associate Professor"=>7, "Librarian"=>2, "Researcher"=>18, "Student > Doctoral Student"=>6, "Student > Ph. D. Student"=>10, "Student > Postgraduate"=>1, "Student > Master"=>5, "Other"=>2, "Student > Bachelor"=>6, "Lecturer"=>2, "Professor"=>9}, "reader_count_by_subject_area"=>{"Engineering"=>1, "Unspecified"=>4, "Biochemistry, Genetics and Molecular Biology"=>4, "Agricultural and Biological Sciences"=>45, "Medicine and Dentistry"=>6, "Psychology"=>5, "Social Sciences"=>5}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>1}, "Medicine and Dentistry"=>{"Medicine and Dentistry"=>6}, "Social Sciences"=>{"Social Sciences"=>5}, "Psychology"=>{"Psychology"=>5}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>45}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>4}, "Unspecified"=>{"Unspecified"=>4}}, "reader_count_by_country"=>{"Austria"=>1, "Netherlands"=>1, "United States"=>4, "Ireland"=>1, "United Kingdom"=>3, "Germany"=>1, "Iceland"=>1}, "group_count"=>2}

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Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/466892"], "description"=>"<div><p>Twin cohorts provide a unique advantage for investigations of the role of genetics and environment in the etiology of variation in common complex traits by reducing the variance due to environment, age, and cohort differences. The GenomEUtwin (<a href=\"http://www.genomeutwin.org\">http://www.genomeutwin.org</a>) consortium consists of eight twin cohorts (Australian, Danish, Dutch, Finnish, Italian, Norwegian, Swedish, and United Kingdom) with the total resource of hundreds of thousands of twin pairs. We performed quantitative trait locus (QTL) analysis of one of the most heritable human complex traits, adult stature (body height) using genome-wide scans performed for 3,817 families (8,450 individuals) derived from twin cohorts from Australia, Denmark, Finland, Netherlands, Sweden, and United Kingdom with an approximate ten-centimorgan microsatellite marker map. The marker maps for different studies differed and they were combined and related to the sequence positions using software developed by us, which is publicly available (<a href=\"https://apps.bioinfo.helsinki.fi/software/cartographer.aspx\">https://apps.bioinfo.helsinki.fi/software/cartographer.aspx</a>). Variance component linkage analysis was performed with age, sex, and country of origin as covariates. The covariate adjusted heritability was 81% for stature in the pooled dataset. We found evidence for a major QTL for human stature on 8q21.3 (multipoint logarithm of the odds 3.28), and suggestive evidence for loci on Chromosomes X, 7, and 20. Some evidence of sex heterogeneity was found, however, no obvious female-specific QTLs emerged. Several cohorts contributed to the identified loci, suggesting an evolutionarily old genetic variant having effects on stature in European-based populations. To facilitate the genetic studies of stature we have also set up a website that lists all stature genome scans published and their most significant loci (<a href=\"http://www.genomeutwin.org/stature_gene_map.htm\">http://www.genomeutwin.org/stature_gene_map.htm</a>).</p></div>", "links"=>[], "tags"=>["genome", "scans", "stature", "european", "caucasian", "loci"], "article_id"=>152033, "categories"=>["Genetics"], "users"=>["Markus Perola", "Sampo Sammalisto", "Tero Hiekkalinna", "Nick G Martin", "Peter M Visscher", "Grant W Montgomery", "Beben Benyamin", "Jennifer R Harris", "Dorret Boomsma", "Gonneke Willemsen", "Jouke-Jan Hottenga", "Kaare Christensen", "Kirsten Ohm Kyvik", "Thorkild I. A Sørensen", "Nancy L Pedersen", "Patrik K. E Magnusson", "Tim D Spector", "Elisabeth Widen", "Karri Silventoinen", "Jaakko Kaprio", "Aarno Palotie", "Leena Peltonen"], "doi"=>"https://dx.doi.org/10.1371/journal.pgen.0030097", "stats"=>{"downloads"=>0, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Combined_Genome_Scans_for_Body_Stature_in_6_602_European_Twins_Evidence_for_Common_Caucasian_Loci/152033", "title"=>"Combined Genome Scans for Body Stature in 6,602 European Twins: Evidence for Common Caucasian Loci", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2007-06-08 00:33:53"}
  • {"files"=>["https://ndownloader.figshare.com/files/949402"], "description"=>"<p>Continued.</p>", "links"=>[], "tags"=>["genetics and genomics"], "article_id"=>619698, "categories"=>["Genetics"], "users"=>["Markus Perola", "Sampo Sammalisto", "Tero Hiekkalinna", "Nick G Martin", "Peter M Visscher", "Grant W Montgomery", "Beben Benyamin", "Jennifer R Harris", "Dorret Boomsma", "Gonneke Willemsen", "Jouke-Jan Hottenga", "Kaare Christensen", "Kirsten Ohm Kyvik", "Thorkild I. A Sørensen", "Nancy L Pedersen", "Patrik K. E Magnusson", "Tim D Spector", "Elisabeth Widen", "Karri Silventoinen", "Jaakko Kaprio", "Aarno Palotie", "Leena Peltonen"], "doi"=>"https://dx.doi.org/10.1371/journal.pgen.0030097.gd3001", "stats"=>{"downloads"=>1, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Continued_/619698", "title"=>"Continued.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2007-06-08 02:41:38"}
  • {"files"=>["https://ndownloader.figshare.com/files/949073"], "description"=>"<p>Multipoint LOD Score Curves for Different Study Subcohorts</p>", "links"=>[], "tags"=>["lod", "curves"], "article_id"=>619363, "categories"=>["Genetics"], "users"=>["Markus Perola", "Sampo Sammalisto", "Tero Hiekkalinna", "Nick G Martin", "Peter M Visscher", "Grant W Montgomery", "Beben Benyamin", "Jennifer R Harris", "Dorret Boomsma", "Gonneke Willemsen", "Jouke-Jan Hottenga", "Kaare Christensen", "Kirsten Ohm Kyvik", "Thorkild I. A Sørensen", "Nancy L Pedersen", "Patrik K. E Magnusson", "Tim D Spector", "Elisabeth Widen", "Karri Silventoinen", "Jaakko Kaprio", "Aarno Palotie", "Leena Peltonen"], "doi"=>"https://dx.doi.org/10.1371/journal.pgen.0030097.g001", "stats"=>{"downloads"=>1, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Multipoint_LOD_Score_Curves_for_Different_Study_Subcohorts_/619363", "title"=>"Multipoint LOD Score Curves for Different Study Subcohorts", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2007-06-08 02:36:03"}
  • {"files"=>["https://ndownloader.figshare.com/files/949900"], "description"=>"<p>The red boxes represent previous studies and the numbers in them refer to the original publications, while the orange boxes represent loci identified in this study.</p>", "links"=>[], "tags"=>["loci", "genome-wide", "qtl", "screens", "stature", "multipoint", "lod", "scores", "been"], "article_id"=>620196, "categories"=>["Genetics"], "users"=>["Markus Perola", "Sampo Sammalisto", "Tero Hiekkalinna", "Nick G Martin", "Peter M Visscher", "Grant W Montgomery", "Beben Benyamin", "Jennifer R Harris", "Dorret Boomsma", "Gonneke Willemsen", "Jouke-Jan Hottenga", "Kaare Christensen", "Kirsten Ohm Kyvik", "Thorkild I. A Sørensen", "Nancy L Pedersen", "Patrik K. E Magnusson", "Tim D Spector", "Elisabeth Widen", "Karri Silventoinen", "Jaakko Kaprio", "Aarno Palotie", "Leena Peltonen"], "doi"=>"https://dx.doi.org/10.1371/journal.pgen.0030097.g003", "stats"=>{"downloads"=>1, "page_views"=>9, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Overview_of_Loci_from_Genome_Wide_QTL_Screens_for_Stature_Where_Multipoint_LOD_Scores_over_2_0_Have_Been_Reported_/620196", "title"=>"Overview of Loci from Genome-Wide QTL Screens for Stature Where Multipoint LOD Scores over 2.0 Have Been Reported", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2007-06-08 00:03:16"}
  • {"files"=>["https://ndownloader.figshare.com/files/949755"], "description"=>"<p>Multipoint LOD Score Curves for the Sample Restricted to DZ Twins Only</p>", "links"=>[], "tags"=>["lod", "curves", "restricted", "dz", "twins"], "article_id"=>620049, "categories"=>["Genetics"], "users"=>["Markus Perola", "Sampo Sammalisto", "Tero Hiekkalinna", "Nick G Martin", "Peter M Visscher", "Grant W Montgomery", "Beben Benyamin", "Jennifer R Harris", "Dorret Boomsma", "Gonneke Willemsen", "Jouke-Jan Hottenga", "Kaare Christensen", "Kirsten Ohm Kyvik", "Thorkild I. A Sørensen", "Nancy L Pedersen", "Patrik K. E Magnusson", "Tim D Spector", "Elisabeth Widen", "Karri Silventoinen", "Jaakko Kaprio", "Aarno Palotie", "Leena Peltonen"], "doi"=>"https://dx.doi.org/10.1371/journal.pgen.0030097.g002", "stats"=>{"downloads"=>1, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Multipoint_LOD_Score_Curves_for_the_Sample_Restricted_to_DZ_Twins_Only_/620049", "title"=>"Multipoint LOD Score Curves for the Sample Restricted to DZ Twins Only", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2007-06-08 00:00:49"}
  • {"files"=>["https://ndownloader.figshare.com/files/949242"], "description"=>"<p>Continued.</p>", "links"=>[], "tags"=>["genetics and genomics"], "article_id"=>619545, "categories"=>["Genetics"], "users"=>["Markus Perola", "Sampo Sammalisto", "Tero Hiekkalinna", "Nick G Martin", "Peter M Visscher", "Grant W Montgomery", "Beben Benyamin", "Jennifer R Harris", "Dorret Boomsma", "Gonneke Willemsen", "Jouke-Jan Hottenga", "Kaare Christensen", "Kirsten Ohm Kyvik", "Thorkild I. A Sørensen", "Nancy L Pedersen", "Patrik K. E Magnusson", "Tim D Spector", "Elisabeth Widen", "Karri Silventoinen", "Jaakko Kaprio", "Aarno Palotie", "Leena Peltonen"], "doi"=>"https://dx.doi.org/10.1371/journal.pgen.0030097.gd2001", "stats"=>{"downloads"=>1, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Continued_/619545", "title"=>"Continued.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2007-06-08 02:39:05"}
  • {"files"=>["https://ndownloader.figshare.com/files/949571"], "description"=>"<p>Continued.</p>", "links"=>[], "tags"=>["genetics and genomics"], "article_id"=>619866, "categories"=>["Genetics"], "users"=>["Markus Perola", "Sampo Sammalisto", "Tero Hiekkalinna", "Nick G Martin", "Peter M Visscher", "Grant W Montgomery", "Beben Benyamin", "Jennifer R Harris", "Dorret Boomsma", "Gonneke Willemsen", "Jouke-Jan Hottenga", "Kaare Christensen", "Kirsten Ohm Kyvik", "Thorkild I. A Sørensen", "Nancy L Pedersen", "Patrik K. E Magnusson", "Tim D Spector", "Elisabeth Widen", "Karri Silventoinen", "Jaakko Kaprio", "Aarno Palotie", "Leena Peltonen"], "doi"=>"https://dx.doi.org/10.1371/journal.pgen.0030097.gd4001", "stats"=>{"downloads"=>0, "page_views"=>1, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Continued_/619866", "title"=>"Continued.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2007-06-08 02:44:26"}

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Relative Metric

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