The Key Role of Genomics in Modern Vaccine and Drug Design for Emerging Infectious Diseases
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{"title"=>"The key role of genomics in modern vaccine and drug design for emerging infectious diseases", "type"=>"generic", "authors"=>[{"first_name"=>"Kate L.", "last_name"=>"Seib", "scopus_author_id"=>"6507917864"}, {"first_name"=>"Gordon", "last_name"=>"Dougan", "scopus_author_id"=>"7102366949"}, {"first_name"=>"Rino", "last_name"=>"Rappuoli", "scopus_author_id"=>"56976632300"}], "year"=>2009, "source"=>"PLoS Genetics", "identifiers"=>{"issn"=>"15537390", "scopus"=>"2-s2.0-70350479576", "pui"=>"358052045", "doi"=>"10.1371/journal.pgen.1000612", "isbn"=>"1553-7404 (Electronic)", "sgr"=>"70350479576", "pmid"=>"19855822"}, "id"=>"825deb42-91fa-3943-a43c-dacd0e71472e", "abstract"=>"It can be argued that the arrival of the genomics era has significantly shifted the paradigm of vaccine and therapeutics development from microbiological to sequence-based approaches. Genome sequences provide a previously unattainable route to investigate the mechanisms that underpin pathogenesis. Genomics, transcriptomics, metabolomics, structural genomics, proteomics, and immunomics are being exploited to perfect the identification of targets, to design new vaccines and drugs, and to predict their effects in patients. Furthermore, human genomics and related studies are providing insights into aspects of host biology that are important in infectious disease. This ever-growing body of genomic data and new genome-based approaches will play a critical role in the future to enable timely development of vaccines and therapeutics to control emerging infectious diseases.", "link"=>"http://www.mendeley.com/research/key-role-genomics-modern-vaccine-drug-design-emerging-infectious-diseases", "reader_count"=>172, "reader_count_by_academic_status"=>{"Unspecified"=>7, "Professor > Associate Professor"=>16, "Researcher"=>45, "Student > Doctoral Student"=>3, "Student > Ph. D. Student"=>34, "Student > Postgraduate"=>10, "Student > Master"=>26, "Other"=>6, "Student > Bachelor"=>17, "Lecturer"=>1, "Lecturer > Senior Lecturer"=>2, "Professor"=>5}, "reader_count_by_user_role"=>{"Unspecified"=>7, "Professor > Associate Professor"=>16, "Researcher"=>45, "Student > Doctoral Student"=>3, "Student > Ph. D. Student"=>34, "Student > Postgraduate"=>10, "Student > Master"=>26, "Other"=>6, "Student > Bachelor"=>17, "Lecturer"=>1, "Lecturer > Senior Lecturer"=>2, "Professor"=>5}, "reader_count_by_subject_area"=>{"Unspecified"=>9, "Agricultural and Biological Sciences"=>95, "Arts and Humanities"=>2, "Veterinary Science and Veterinary Medicine"=>1, "Computer Science"=>7, "Earth and Planetary Sciences"=>2, "Engineering"=>2, "Environmental Science"=>1, "Biochemistry, Genetics and Molecular Biology"=>12, "Nursing and Health Professions"=>3, "Medicine and Dentistry"=>27, "Pharmacology, Toxicology and Pharmaceutical Science"=>1, "Physics and Astronomy"=>1, "Psychology"=>1, "Social Sciences"=>4, "Immunology and Microbiology"=>3, "Linguistics"=>1}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>27}, "Social Sciences"=>{"Social Sciences"=>4}, "Physics and Astronomy"=>{"Physics and Astronomy"=>1}, "Psychology"=>{"Psychology"=>1}, "Unspecified"=>{"Unspecified"=>9}, "Environmental Science"=>{"Environmental Science"=>1}, "Pharmacology, Toxicology and Pharmaceutical Science"=>{"Pharmacology, Toxicology and Pharmaceutical Science"=>1}, "Arts and Humanities"=>{"Arts and Humanities"=>2}, "Engineering"=>{"Engineering"=>2}, "Earth and Planetary Sciences"=>{"Earth and Planetary Sciences"=>2}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>3}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>95}, "Computer Science"=>{"Computer Science"=>7}, "Nursing and Health Professions"=>{"Nursing and Health Professions"=>3}, "Linguistics"=>{"Linguistics"=>1}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>12}, "Veterinary Science and Veterinary Medicine"=>{"Veterinary Science and Veterinary Medicine"=>1}}, "reader_count_by_country"=>{"Colombia"=>2, "United States"=>7, "Egypt"=>1, "United Kingdom"=>3, "Thailand"=>1, "India"=>4, "French Polynesia"=>1, "Canada"=>2, "Sweden"=>1, "South Korea"=>1, "Brazil"=>3, "South Africa"=>1, "Italy"=>1, "Australia"=>1, "Nigeria"=>1, "France"=>2, "Germany"=>1, "Indonesia"=>1}, "group_count"=>11}

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/878246"], "description"=>"<p>(A) The causative agent of a disease may first be identified from patient samples by using metagenomics. (B) Vaccine and therapeutic targets can be identified from the pathogen genome using a variety of screening approaches that focus on the genome, transcriptome, proteome, immunome or structural genome. (C) The human genome can be screened to avoid homologies or similarities with pathogen vaccine and therapeutic targets, or to identify new targets. (D) Once candidate vaccine and therapeutic targets have been identified they must be shown to provide protection against disease and to be safe for use in patients. (E) The clinically tested vaccine or therapeutic can then be licensed for use. The clinical responses of a vaccine and/or therapeutic can be analyzed using human genome based studies (dotted arrows). The pathogen genome can also be used to analyze mutants that are able to evade the immune system in vaccinated subjects or organisms that develop antibiotic resistance. Examples of the approaches indicated are given in <a href=\"http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1000612#pgen-1000612-t001\" target=\"_blank\">Table 1</a>.</p>", "links"=>[], "tags"=>["approaches", "eids", "outbreak"], "article_id"=>548703, "categories"=>["Microbiology", "Genetics", "Infectious Diseases"], "users"=>["Kate L. Seib", "Gordon Dougan", "Rino Rappuoli"], "doi"=>["https://dx.doi.org/10.1371/journal.pgen.1000612.g001"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Genomics_based_approaches_used_in_the_control_of_EIDs_from_the_outbreak_of_a_disease_to_the_development_of_a_vaccine_or_drug_/548703", "title"=>"Genomics-based approaches used in the control of EIDs from the outbreak of a disease to the development of a vaccine or drug.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 04:04:52"}
  • {"files"=>["https://ndownloader.figshare.com/files/878321"], "description"=>"<p>Approaches to identify vaccine and/or drug targets against EIDs in the genomic era.</p>", "links"=>[], "tags"=>["targets", "eids", "genomic"], "article_id"=>548779, "categories"=>["Microbiology", "Genetics", "Infectious Diseases"], "users"=>["Kate L. Seib", "Gordon Dougan", "Rino Rappuoli"], "doi"=>["https://dx.doi.org/10.1371/journal.pgen.1000612.t001"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Approaches_to_identify_vaccine_and_or_drug_targets_against_EIDs_in_the_genomic_era_/548779", "title"=>"Approaches to identify vaccine and/or drug targets against EIDs in the genomic era.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-21 04:05:20"}

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Relative Metric

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