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• {"link"=>{"url"=>"http://www.citeulike.org/user/pcarbo/article/8901751"}, "post_time"=>"2011-05-09 14:57:03", "tag"=>"heritability", "linkout"=>[{"type"=>"DOI", "url"=>"http://dx.doi.org/10.1371/journal.pgen.1001317"}, {"type"=>"Pubmed Central", "url"=>"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3044684/"}, {"type"=>"Pubmed", "url"=>"http://view.ncbi.nlm.nih.gov/pubmed/21383966"}, {"type"=>"Hubmed", "url"=>"http://www.hubmed.org/display.cgi?uids=21383966"}], "username"=>"pcarbo", "article_id"=>"8901751"}
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Mendeley | Further Information

{"title"=>"Single-tissue and cross-tissue heritability of gene expression via identity-by-descent in related or unrelated individuals", "type"=>"journal", "authors"=>[{"first_name"=>"Alkes L.", "last_name"=>"Price", "scopus_author_id"=>"57199322743"}, {"first_name"=>"Agnar", "last_name"=>"Helgason", "scopus_author_id"=>"7005948504"}, {"first_name"=>"Gudmar", "last_name"=>"Thorleifsson", "scopus_author_id"=>"7003411255"}, {"first_name"=>"Steven A.", "last_name"=>"McCarroll", "scopus_author_id"=>"55749201300"}, {"first_name"=>"Augustine", "last_name"=>"Kong", "scopus_author_id"=>"34667880600"}, {"first_name"=>"Kari", "last_name"=>"Stefansson", "scopus_author_id"=>"7005997553"}], "year"=>2011, "source"=>"PLoS Genetics", "identifiers"=>{"sgr"=>"79952263851", "doi"=>"10.1371/journal.pgen.1001317", "issn"=>"15537390", "pui"=>"361374011", "isbn"=>"1553-7404 (Electronic)\\r1553-7390 (Linking)", "pmid"=>"21383966", "scopus"=>"2-s2.0-79952263851"}, "id"=>"2e65f227-1805-3775-afb1-6e9c24aae380", "abstract"=>"Family studies of individual tissues have shown that gene expression traits are genetically heritable. Here, we investigate cis and trans components of heritability both within and across tissues by applying variance-components methods to 722 Icelanders from family cohorts, using identity-by-descent (IBD) estimates from long-range phased genome-wide SNP data and gene expression measurements for approximately 19,000 genes in blood and adipose tissue. We estimate the proportion of gene expression heritability attributable to cis regulation as 37% in blood and 24% in adipose tissue. Our results indicate that the correlation in gene expression measurements across these tissues is primarily due to heritability at cis loci, whereas there is little sharing of trans regulation across tissues. One implication of this finding is that heritability in tissues composed of heterogeneous cell types is expected to be more dominated by cis regulation than in tissues composed of more homogeneous cell types, consistent with our blood versus adipose results as well as results of previous studies in lymphoblastoid cell lines. Finally, we obtained similar estimates of the cis components of heritability using IBD between unrelated individuals, indicating that transgenerational epigenetic inheritance does not contribute substantially to the \"missing heritability\" of gene expression in these tissue types.", "link"=>"http://www.mendeley.com/research/singletissue-crosstissue-heritability-gene-expression-via-identitybydescent-related-unrelated-indivi", "reader_count"=>166, "reader_count_by_academic_status"=>{"Unspecified"=>1, "Professor > Associate Professor"=>14, "Researcher"=>55, "Student > Doctoral Student"=>2, "Student > Ph. D. Student"=>59, "Student > Postgraduate"=>2, "Student > Master"=>6, "Other"=>4, "Student > Bachelor"=>9, "Lecturer"=>1, "Lecturer > Senior Lecturer"=>1, "Professor"=>12}, "reader_count_by_user_role"=>{"Unspecified"=>1, "Professor > Associate Professor"=>14, "Researcher"=>55, "Student > Doctoral Student"=>2, "Student > Ph. D. Student"=>59, "Student > Postgraduate"=>2, "Student > Master"=>6, "Other"=>4, "Student > Bachelor"=>9, "Lecturer"=>1, "Lecturer > Senior Lecturer"=>1, "Professor"=>12}, "reader_count_by_subject_area"=>{"Unspecified"=>6, "Engineering"=>1, "Biochemistry, Genetics and Molecular Biology"=>21, "Mathematics"=>6, "Agricultural and Biological Sciences"=>106, "Medicine and Dentistry"=>12, "Neuroscience"=>3, "Chemistry"=>1, "Psychology"=>1, "Computer Science"=>7, "Immunology and Microbiology"=>2}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>1}, "Medicine and Dentistry"=>{"Medicine and Dentistry"=>12}, "Neuroscience"=>{"Neuroscience"=>3}, "Chemistry"=>{"Chemistry"=>1}, "Psychology"=>{"Psychology"=>1}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>2}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>106}, "Computer Science"=>{"Computer Science"=>7}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>21}, "Mathematics"=>{"Mathematics"=>6}, "Unspecified"=>{"Unspecified"=>6}}, "reader_count_by_country"=>{"New Zealand"=>1, "Austria"=>1, "United States"=>13, "Uruguay"=>1, "Brazil"=>1, "United Kingdom"=>2, "Mexico"=>1}, "group_count"=>8}

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• {"id"=>"514738899940548609", "text"=>"@rplenge @dgmacarthur see here: http://t.co/tnxec7flY3", "created_at"=>"2014-09-24T11:31:31Z", "user"=>"bbuliksullivan", "user_name"=>"Brendan B-S", "user_profile_image"=>"http://pbs.twimg.com/profile_images/378800000723318854/f2f9d533f7202a748898a43aa9ec4f9f_normal.jpeg"}
• {"id"=>"514968694368501760", "text"=>"@Y_Gilad @leonidkruglyak @kwbroman @mstephens999 @dgmacarthur similar results from whole-genome methods w/ good power http://t.co/tnxec7flY3", "created_at"=>"2014-09-25T02:44:39Z", "user"=>"bbuliksullivan", "user_name"=>"Brendan B-S", "user_profile_image"=>"http://pbs.twimg.com/profile_images/378800000723318854/f2f9d533f7202a748898a43aa9ec4f9f_normal.jpeg"}
• {"id"=>"522082793837563904", "text"=>".@kwbroman wait ... what? everything i've heard suggests the opposite (e.g., http://t.co/tnxec7flY3)", "created_at"=>"2014-10-14T17:53:32Z", "user"=>"bbuliksullivan", "user_name"=>"Brendan B-S", "user_profile_image"=>"http://pbs.twimg.com/profile_images/378800000723318854/f2f9d533f7202a748898a43aa9ec4f9f_normal.jpeg"}

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Figshare

• {"files"=>["https://ndownloader.figshare.com/files/397974", "https://ndownloader.figshare.com/files/398023", "https://ndownloader.figshare.com/files/398058", "https://ndownloader.figshare.com/files/398088", "https://ndownloader.figshare.com/files/398118", "https://ndownloader.figshare.com/files/398147", "https://ndownloader.figshare.com/files/398191", "https://ndownloader.figshare.com/files/398231"], "description"=>"<div><p>Family studies of individual tissues have shown that gene expression traits are genetically heritable. Here, we investigate <em>cis</em> and <em>trans</em> components of heritability both within and across tissues by applying variance-components methods to 722 Icelanders from family cohorts, using identity-by-descent (IBD) estimates from long-range phased genome-wide SNP data and gene expression measurements for ∼19,000 genes in blood and adipose tissue. We estimate the proportion of gene expression heritability attributable to <em>cis</em> regulation as 37% in blood and 24% in adipose tissue. Our results indicate that the correlation in gene expression measurements across these tissues is primarily due to heritability at <em>cis</em> loci, whereas there is little sharing of <em>trans</em> regulation across tissues. One implication of this finding is that heritability in tissues composed of heterogeneous cell types is expected to be more dominated by <em>cis</em> regulation than in tissues composed of more homogeneous cell types, consistent with our blood versus adipose results as well as results of previous studies in lymphoblastoid cell lines. Finally, we obtained similar estimates of the <em>cis</em> components of heritability using IBD between unrelated individuals, indicating that transgenerational epigenetic inheritance does not contribute substantially to the “missing heritability” of gene expression in these tissue types.</p></div>", "links"=>[], "tags"=>["single-tissue", "cross-tissue", "heritability", "identity-by-descent", "unrelated", "individuals"], "article_id"=>138629, "categories"=>["Genetics"], "users"=>["Alkes L. Price", "Agnar Helgason", "Gudmar Thorleifsson", "Steven A. McCarroll", "Augustine Kong", "Kari Stefansson"], "doi"=>["https://dx.doi.org/10.1371/journal.pgen.1001317.s001", "https://dx.doi.org/10.1371/journal.pgen.1001317.s002", "https://dx.doi.org/10.1371/journal.pgen.1001317.s003", "https://dx.doi.org/10.1371/journal.pgen.1001317.s004", "https://dx.doi.org/10.1371/journal.pgen.1001317.s005", "https://dx.doi.org/10.1371/journal.pgen.1001317.s006", "https://dx.doi.org/10.1371/journal.pgen.1001317.s007", "https://dx.doi.org/10.1371/journal.pgen.1001317.s008"], "stats"=>{"downloads"=>12, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Single_Tissue_and_Cross_Tissue_Heritability_of_Gene_Expression_Via_Identity_by_Descent_in_Related_or_Unrelated_Individuals/138629", "title"=>"Single-Tissue and Cross-Tissue Heritability of Gene Expression Via Identity-by-Descent in Related or Unrelated Individuals", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2011-02-24 02:23:49"}
• {"files"=>["https://ndownloader.figshare.com/files/795278"], "description"=>"<p>We plot the local relatedness (0, 1 or 2 copies IBD) between two siblings from the IFB cohort at each 2cM block on chromosome 1. The dotted line represents their genome-wide relatedness of 0.568, which is within the expected range for siblings <a href=\"http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1001317#pgen.1001317-Visscher2\" target=\"_blank\">[46]</a>.</p>", "links"=>[], "tags"=>["genome-wide"], "article_id"=>465646, "categories"=>["Genetics"], "users"=>["Alkes L. Price", "Agnar Helgason", "Gudmar Thorleifsson", "Steven A. McCarroll", "Augustine Kong", "Kari Stefansson"], "doi"=>"https://dx.doi.org/10.1371/journal.pgen.1001317.g001", "stats"=>{"downloads"=>0, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Local_and_genome_wide_IBD_/465646", "title"=>"Local and genome-wide IBD.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2011-02-24 01:34:06"}
• {"files"=>["https://ndownloader.figshare.com/files/795584"], "description"=>"<p>Plots are analogous to those in <a href=\"http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1001317#pgen-1001317-g002\" target=\"_blank\">Figure 2</a>, except that we analyze the covariance between related individuals in <i>different</i> tissues, instead of between related individuals in the same tissue. (A) Cross-tissue covariance between related individuals in the intersection of IFB and IFA varies with genome-wide IBD. The slope of this plot corresponds to the regression-based estimate of <i>ξ</i>². (B) Cross-tissue covariance between siblings in the intersection of IFB and IFA with 0, 1 or 2 copies IBD at the <i>cis</i> locus, minus total covariance as displayed in (A). The slope of this plot corresponds to <i>ξ_cis</i>².</p>", "links"=>[], "tags"=>["heritability", "ifb", "ifa"], "article_id"=>465955, "categories"=>["Genetics"], "users"=>["Alkes L. Price", "Agnar Helgason", "Gudmar Thorleifsson", "Steven A. McCarroll", "Augustine Kong", "Kari Stefansson"], "doi"=>"https://dx.doi.org/10.1371/journal.pgen.1001317.g003", "stats"=>{"downloads"=>1, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Cross_tissue_heritability_in_the_IFB_and_IFA_cohorts_/465955", "title"=>"Cross-tissue heritability in the IFB and IFA cohorts.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2011-02-24 01:39:15"}
• {"files"=>["https://ndownloader.figshare.com/files/795422"], "description"=>"<p>(A) Gene expression covariance (average value of product of normalized gene expression measurements) between related individuals in the IFB cohort varies with genome-wide IBD. Each point represents one pair of related individuals. The slope of this plot corresponds to the regression-based estimate of <i>h</i>². (B) Same as (A), for IFA cohort. (C) Gene expression covariance between siblings for genes with 0, 1 or 2 copies IBD at the <i>cis</i> locus, minus total covariance as displayed above. The slope of this plot corresponds to the regression-based estimate of <i>h_cis</i>². The signal to noise ratio is higher in this plot due to reduced effects of systematic noise covariance. (D) Same as (C), for IFA cohort.</p>", "links"=>[], "tags"=>["heritability", "ifb", "ifa"], "article_id"=>465785, "categories"=>["Genetics"], "users"=>["Alkes L. Price", "Agnar Helgason", "Gudmar Thorleifsson", "Steven A. McCarroll", "Augustine Kong", "Kari Stefansson"], "doi"=>"https://dx.doi.org/10.1371/journal.pgen.1001317.g002", "stats"=>{"downloads"=>2, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Family_heritability_in_the_IFB_and_IFA_cohorts_/465785", "title"=>"Family heritability in the IFB and IFA cohorts.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2011-02-24 01:36:25"}

PMC Usage Stats | Further Information

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Relative Metric

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F1000Prime