Identification of a BRCA2-Specific Modifier Locus at 6p24 Related to Breast Cancer Risk
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"last_name"=>"Rebischung", "scopus_author_id"=>"6603112068"}, {"first_name"=>"Magalie", "last_name"=>"Peysselon", "scopus_author_id"=>"56695479500"}, {"first_name"=>"Fanny", "last_name"=>"Coron", "scopus_author_id"=>"35309700000"}, {"first_name"=>"Laurence", "last_name"=>"Faivre", "scopus_author_id"=>"7003645330"}, {"first_name"=>"Fabienne", "last_name"=>"Prieur", "scopus_author_id"=>"6701649200"}, {"first_name"=>"Marine", "last_name"=>"Lebrun", "scopus_author_id"=>"25641413400"}, {"first_name"=>"Caroline", "last_name"=>"Kientz", "scopus_author_id"=>"53982919100"}, {"first_name"=>"Sandra Fert", "last_name"=>"Ferrer", "scopus_author_id"=>"57196476707"}, {"first_name"=>"Marc", "last_name"=>"Frénay", "scopus_author_id"=>"7006785994"}, {"first_name"=>"Laurence", "last_name"=>"Vénat-Bouvet", "scopus_author_id"=>"57191366848"}, {"first_name"=>"Capucine", "last_name"=>"Delnatte", "scopus_author_id"=>"6507801931"}, {"first_name"=>"Isabelle", "last_name"=>"Mortemousque", "scopus_author_id"=>"36682829400"}, {"first_name"=>"Henry T.", "last_name"=>"Lynch", "scopus_author_id"=>"35377379200"}, {"first_name"=>"Carrie L.", "last_name"=>"Snyder", "scopus_author_id"=>"7202613534"}], "year"=>2013, "source"=>"PLoS Genetics", "identifiers"=>{"pui"=>"368694377", "sgr"=>"84875733563", "issn"=>"15537404", "pmid"=>"23544012", "scopus"=>"2-s2.0-84875733563", "doi"=>"10.1371/journal.pgen.1003173", "isbn"=>"1553-7404 (Electronic)\\n1553-7390 (Linking)"}, "id"=>"ff523f0c-70e4-3514-b936-29292f9e4135", "abstract"=>"Common genetic variants contribute to the observed variation in breast cancer risk for BRCA2 mutation carriers; those known to date have all been found through population-based genome-wide association studies (GWAS). To comprehensively identify breast cancer risk modifying loci for BRCA2 mutation carriers, we conducted a deep replication of an ongoing GWAS discovery study. Using the ranked P-values of the breast cancer associations with the imputed genotype of 1.4 M SNPs, 19,029 SNPs were selected and designed for inclusion on a custom Illumina array that included a total of 211,155 SNPs as part of a multi-consortial project. DNA samples from 3,881 breast cancer affected and 4,330 unaffected BRCA2 mutation carriers from 47 studies belonging to the Consortium of Investigators of Modifiers of BRCA1/2 were genotyped and available for analysis. We replicated previously reported breast cancer susceptibility alleles in these BRCA2 mutation carriers and for several regions (including FGFR2, MAP3K1, CDKN2A/B, and PTHLH) identified SNPs that have stronger evidence of association than those previously published. We also identified a novel susceptibility allele at 6p24 that was inversely associated with risk in BRCA2 mutation carriers (rs9348512; per allele HR = 0.85, 95% CI 0.80-0.90, P = 3.9 × 10(-8)). This SNP was not associated with breast cancer risk either in the general population or in BRCA1 mutation carriers. The locus lies within a region containing TFAP2A, which encodes a transcriptional activation protein that interacts with several tumor suppressor genes. This report identifies the first breast cancer risk locus specific to a BRCA2 mutation background. This comprehensive update of novel and previously reported breast cancer susceptibility loci contributes to the establishment of a panel of SNPs that modify breast cancer risk in BRCA2 mutation carriers. This panel may have clinical utility for women with BRCA2 mutations weighing options for medical prevention of breast cancer.", "link"=>"http://www.mendeley.com/research/identification-brca2specific-modifier-locus-6p24-related-breast-cancer-risk-1", "reader_count"=>109, "reader_count_by_academic_status"=>{"Unspecified"=>3, "Professor > Associate Professor"=>13, "Librarian"=>7, "Researcher"=>22, "Student > Doctoral Student"=>5, "Student > Ph. D. Student"=>22, "Student > Postgraduate"=>4, "Other"=>3, "Student > Master"=>5, "Student > Bachelor"=>14, "Lecturer"=>1, "Lecturer > Senior Lecturer"=>1, "Professor"=>9}, "reader_count_by_user_role"=>{"Unspecified"=>3, "Professor > Associate Professor"=>13, "Librarian"=>7, "Researcher"=>22, "Student > Doctoral Student"=>5, "Student > Ph. D. Student"=>22, "Student > Postgraduate"=>4, "Other"=>3, "Student > Master"=>5, "Student > Bachelor"=>14, "Lecturer"=>1, "Lecturer > Senior Lecturer"=>1, "Professor"=>9}, "reader_count_by_subject_area"=>{"Unspecified"=>7, "Biochemistry, Genetics and Molecular Biology"=>18, "Mathematics"=>1, "Agricultural and Biological Sciences"=>41, "Medicine and Dentistry"=>38, "Business, Management and Accounting"=>1, "Pharmacology, Toxicology and Pharmaceutical Science"=>1, "Psychology"=>1, "Chemistry"=>1}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>38}, "Chemistry"=>{"Chemistry"=>1}, "Psychology"=>{"Psychology"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>41}, "Business, Management and Accounting"=>{"Business, Management and Accounting"=>1}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>18}, "Mathematics"=>{"Mathematics"=>1}, "Unspecified"=>{"Unspecified"=>7}, "Pharmacology, Toxicology and Pharmaceutical Science"=>{"Pharmacology, Toxicology and Pharmaceutical Science"=>1}}, "reader_count_by_country"=>{"Greece"=>1, "Belgium"=>1, "Uruguay"=>1, "United States"=>1, "China"=>2, "Egypt"=>1, "Finland"=>1, "United Kingdom"=>1}, "group_count"=>4}

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/999602"], "description"=>"<p>Results based on imputed and observed genotypes. The blue spikes indicate the recombination rate at each position. Genotyped SNPs are represented by diamonds and imputed SNPs are represented by squares. Color saturation indicates the degree of correlation with the SNP rs9348512.</p>", "links"=>[], "tags"=>["snps", "rs9348512", "chromosome", "cancer"], "article_id"=>661513, "categories"=>["Genetics"], "users"=>["Mia M. Gaudet", "Karoline B. Kuchenbaecker", "Joseph Vijai", "Robert J. Klein", "Tomas Kirchhoff", "Lesley McGuffog", "Daniel Barrowdale", "Alison M. Dunning", "Andrew Lee", "Joe Dennis", "Sue Healey", "Ed Dicks", "Penny Soucy", "Olga M. Sinilnikova", "Vernon S. Pankratz", "Xianshu Wang", "Ronald C. Eldridge", "Daniel C. Tessier", "Daniel Vincent", "François Bacot", "Frans B. L. Hogervorst", "Susan Peock", "Dominique Stoppa-Lyonnet", "Paolo Peterlongo", "Rita K. Schmutzler", "Katherine L. Nathanson", "Marion Piedmonte", "Christian F. Singer", "Mads Thomassen", "Thomas V. O. Hansen", "Susan L. Neuhausen", "Ignacio Blanco", "Mark H. Greene", "Judith Garber", "Jeffrey N. Weitzel", "Irene L. Andrulis", "David E. Goldgar", "Emma D'Andrea", "Trinidad Caldés", "Heli Nevanlinna", "Ana Osorio", "Elizabeth J. van Rensburg", "Adalgeir Arason", "Gad Rennert", "Ans M. W. van den Ouweland", "Annemarie H. van der Hout", "Carolien M. Kets", "Cora M. Aalfs", "Juul T. Wijnen", "Margreet G. E. M. Ausems", "Debra Frost", "Steve Ellis", "Elena Fineberg", "Radka Platte", "D. Gareth Evans", "Chris Jacobs", "Julian Adlard", "Marc Tischkowitz", "Mary E. Porteous", "Francesca Damiola", "Lisa Golmard", "Laure Barjhoux", "Michel Longy", "Muriel Belotti", "Sandra Fert Ferrer", "Sylvie Mazoyer", "Amanda B. Spurdle", "Siranoush Manoukian", "Monica Barile", "Maurizio Genuardi", "Norbert Arnold", "Alfons Meindl", "Christian Sutter", "Barbara Wappenschmidt", "Susan M. Domchek", "Georg Pfeiler", "Eitan Friedman", "Uffe Birk Jensen", "Mark Robson", "Sohela Shah", "Conxi Lázaro", "Phuong L. Mai", "Javier Benitez", "Melissa C. Southey", "Marjanka K. Schmidt", "Peter A. Fasching", "Julian Peto", "Manjeet K. Humphreys", "Qin Wang", "Kyriaki Michailidou", "Elinor J. Sawyer", "Barbara Burwinkel", "Pascal Guénel", "Stig E. Bojesen", "Roger L. Milne", "Hermann Brenner", "Magdalena Lochmann", "Kristiina Aittomäki", "Thilo Dörk", "Sara Margolin", "Arto Mannermaa", "Diether Lambrechts", "Jenny Chang-Claude", "Paolo Radice", "Graham G. Giles", "Christopher A. Haiman", "Robert Winqvist", "Peter Devillee", "Montserrat Garcia-Closas", "Nils Schoof", "Maartje J. Hooning", "Angela Cox", "Paul D. P. Pharoah", "Anna Jakubowska", "Nick Orr", "Anna Gonzalez-Neira", "Guillermo Pita", "M. Rosario Alonso", "Per Hall", "Fergus J. Couch", "Jacques Simard", "David Altshuler", "Douglas F. Easton", "Georgia Chenevix-Trench", "Antonis C. Antoniou", "Kenneth Offit"], "doi"=>"https://dx.doi.org/10.1371/journal.pgen.1003173.g001", "stats"=>{"downloads"=>0, "page_views"=>14, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Associations_between_SNPs_in_the_region_surrounding_rs9348512_on_chromosome_6_and_breast_cancer_risk_/661513", "title"=>"Associations between SNPs in the region surrounding rs9348512 on chromosome 6 and breast cancer risk.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-03-28 09:52:54"}
  • {"files"=>["https://ndownloader.figshare.com/files/999603"], "description"=>"<p>Based on the known breast cancer susceptibility loci at <i>FGFR2, TOX3</i>, 12p11, 5q11, <i>CDKN2A/B, LSP1</i>, 8q24, <i>ESR1</i>, <i>ZNF365</i>, 3p24, 12q24, 5p12, 11q13 and the newly identified <i>BRCA2</i> modifier locus at 6p24. The figure shows the risks at the 5<sup>th</sup> and 95<sup>th</sup> percentiles of the combined genotyped distribution as well as minimum, maximum and average risks.</p>", "links"=>[], "tags"=>["cancer", "risks", "mutation", "carriers", "snp"], "article_id"=>661514, "categories"=>["Genetics"], "users"=>["Mia M. Gaudet", "Karoline B. Kuchenbaecker", "Joseph Vijai", "Robert J. Klein", "Tomas Kirchhoff", "Lesley McGuffog", "Daniel Barrowdale", "Alison M. Dunning", "Andrew Lee", "Joe Dennis", "Sue Healey", "Ed Dicks", "Penny Soucy", "Olga M. Sinilnikova", "Vernon S. Pankratz", "Xianshu Wang", "Ronald C. Eldridge", "Daniel C. Tessier", "Daniel Vincent", "François Bacot", "Frans B. L. Hogervorst", "Susan Peock", "Dominique Stoppa-Lyonnet", "Paolo Peterlongo", "Rita K. Schmutzler", "Katherine L. Nathanson", "Marion Piedmonte", "Christian F. Singer", "Mads Thomassen", "Thomas V. O. Hansen", "Susan L. Neuhausen", "Ignacio Blanco", "Mark H. Greene", "Judith Garber", "Jeffrey N. Weitzel", "Irene L. Andrulis", "David E. Goldgar", "Emma D'Andrea", "Trinidad Caldés", "Heli Nevanlinna", "Ana Osorio", "Elizabeth J. van Rensburg", "Adalgeir Arason", "Gad Rennert", "Ans M. W. van den Ouweland", "Annemarie H. van der Hout", "Carolien M. Kets", "Cora M. Aalfs", "Juul T. Wijnen", "Margreet G. E. M. Ausems", "Debra Frost", "Steve Ellis", "Elena Fineberg", "Radka Platte", "D. Gareth Evans", "Chris Jacobs", "Julian Adlard", "Marc Tischkowitz", "Mary E. Porteous", "Francesca Damiola", "Lisa Golmard", "Laure Barjhoux", "Michel Longy", "Muriel Belotti", "Sandra Fert Ferrer", "Sylvie Mazoyer", "Amanda B. Spurdle", "Siranoush Manoukian", "Monica Barile", "Maurizio Genuardi", "Norbert Arnold", "Alfons Meindl", "Christian Sutter", "Barbara Wappenschmidt", "Susan M. Domchek", "Georg Pfeiler", "Eitan Friedman", "Uffe Birk Jensen", "Mark Robson", "Sohela Shah", "Conxi Lázaro", "Phuong L. Mai", "Javier Benitez", "Melissa C. Southey", "Marjanka K. Schmidt", "Peter A. Fasching", "Julian Peto", "Manjeet K. Humphreys", "Qin Wang", "Kyriaki Michailidou", "Elinor J. Sawyer", "Barbara Burwinkel", "Pascal Guénel", "Stig E. Bojesen", "Roger L. Milne", "Hermann Brenner", "Magdalena Lochmann", "Kristiina Aittomäki", "Thilo Dörk", "Sara Margolin", "Arto Mannermaa", "Diether Lambrechts", "Jenny Chang-Claude", "Paolo Radice", "Graham G. Giles", "Christopher A. Haiman", "Robert Winqvist", "Peter Devillee", "Montserrat Garcia-Closas", "Nils Schoof", "Maartje J. Hooning", "Angela Cox", "Paul D. P. Pharoah", "Anna Jakubowska", "Nick Orr", "Anna Gonzalez-Neira", "Guillermo Pita", "M. Rosario Alonso", "Per Hall", "Fergus J. Couch", "Jacques Simard", "David Altshuler", "Douglas F. Easton", "Georgia Chenevix-Trench", "Antonis C. Antoniou", "Kenneth Offit"], "doi"=>"https://dx.doi.org/10.1371/journal.pgen.1003173.g002", "stats"=>{"downloads"=>0, "page_views"=>2, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Predicted_breast_cancer_risks_for_BRCA2_mutation_carriers_by_the_combined_SNP_profile_distributions_/661514", "title"=>"Predicted breast cancer risks for <i>BRCA2</i> mutation carriers by the combined SNP profile distributions.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-03-28 09:53:17"}
  • {"files"=>["https://ndownloader.figshare.com/files/999605", "https://ndownloader.figshare.com/files/999615", "https://ndownloader.figshare.com/files/999612", "https://ndownloader.figshare.com/files/999611", "https://ndownloader.figshare.com/files/999610", "https://ndownloader.figshare.com/files/999609", "https://ndownloader.figshare.com/files/999608", "https://ndownloader.figshare.com/files/999607", "https://ndownloader.figshare.com/files/999606", "https://ndownloader.figshare.com/files/999616"], "description"=>"<div><p>Common genetic variants contribute to the observed variation in breast cancer risk for <i>BRCA2</i> mutation carriers; those known to date have all been found through population-based genome-wide association studies (GWAS). To comprehensively identify breast cancer risk modifying loci for <i>BRCA2</i> mutation carriers, we conducted a deep replication of an ongoing GWAS discovery study. Using the ranked P-values of the breast cancer associations with the imputed genotype of 1.4 M SNPs, 19,029 SNPs were selected and designed for inclusion on a custom Illumina array that included a total of 211,155 SNPs as part of a multi-consortial project. DNA samples from 3,881 breast cancer affected and 4,330 unaffected <i>BRCA2</i> mutation carriers from 47 studies belonging to the Consortium of Investigators of Modifiers of <i>BRCA1/2</i> were genotyped and available for analysis. We replicated previously reported breast cancer susceptibility alleles in these <i>BRCA2</i> mutation carriers and for several regions (including <i>FGFR2</i>, <i>MAP3K1</i>, <i>CDKN2A/B</i>, and <i>PTHLH</i>) identified SNPs that have stronger evidence of association than those previously published. We also identified a novel susceptibility allele at 6p24 that was inversely associated with risk in <i>BRCA2</i> mutation carriers (rs9348512; per allele HR = 0.85, 95% CI 0.80–0.90, P = 3.9×10<sup>−8</sup>). This SNP was not associated with breast cancer risk either in the general population or in <i>BRCA1</i> mutation carriers. The locus lies within a region containing <i>TFAP2A</i>, which encodes a transcriptional activation protein that interacts with several tumor suppressor genes. This report identifies the first breast cancer risk locus specific to a <i>BRCA2</i> mutation background. This comprehensive update of novel and previously reported breast cancer susceptibility loci contributes to the establishment of a panel of SNPs that modify breast cancer risk in <i>BRCA2</i> mutation carriers. This panel may have clinical utility for women with <i>BRCA2</i> mutations weighing options for medical prevention of breast cancer.</p> </div>", "links"=>[], "tags"=>["modifier", "locus", "6p24", "cancer"], "article_id"=>661516, "categories"=>["Genetics"], "users"=>["Mia M. Gaudet", "Karoline B. Kuchenbaecker", "Joseph Vijai", "Robert J. Klein", "Tomas Kirchhoff", "Lesley McGuffog", "Daniel Barrowdale", "Alison M. Dunning", "Andrew Lee", "Joe Dennis", "Sue Healey", "Ed Dicks", "Penny Soucy", "Olga M. Sinilnikova", "Vernon S. Pankratz", "Xianshu Wang", "Ronald C. Eldridge", "Daniel C. Tessier", "Daniel Vincent", "François Bacot", "Frans B. L. Hogervorst", "Susan Peock", "Dominique Stoppa-Lyonnet", "Paolo Peterlongo", "Rita K. Schmutzler", "Katherine L. Nathanson", "Marion Piedmonte", "Christian F. Singer", "Mads Thomassen", "Thomas V. O. Hansen", "Susan L. Neuhausen", "Ignacio Blanco", "Mark H. Greene", "Judith Garber", "Jeffrey N. Weitzel", "Irene L. Andrulis", "David E. Goldgar", "Emma D'Andrea", "Trinidad Caldés", "Heli Nevanlinna", "Ana Osorio", "Elizabeth J. van Rensburg", "Adalgeir Arason", "Gad Rennert", "Ans M. W. van den Ouweland", "Annemarie H. van der Hout", "Carolien M. Kets", "Cora M. Aalfs", "Juul T. Wijnen", "Margreet G. E. M. Ausems", "Debra Frost", "Steve Ellis", "Elena Fineberg", "Radka Platte", "D. Gareth Evans", "Chris Jacobs", "Julian Adlard", "Marc Tischkowitz", "Mary E. Porteous", "Francesca Damiola", "Lisa Golmard", "Laure Barjhoux", "Michel Longy", "Muriel Belotti", "Sandra Fert Ferrer", "Sylvie Mazoyer", "Amanda B. Spurdle", "Siranoush Manoukian", "Monica Barile", "Maurizio Genuardi", "Norbert Arnold", "Alfons Meindl", "Christian Sutter", "Barbara Wappenschmidt", "Susan M. Domchek", "Georg Pfeiler", "Eitan Friedman", "Uffe Birk Jensen", "Mark Robson", "Sohela Shah", "Conxi Lázaro", "Phuong L. Mai", "Javier Benitez", "Melissa C. Southey", "Marjanka K. Schmidt", "Peter A. Fasching", "Julian Peto", "Manjeet K. Humphreys", "Qin Wang", "Kyriaki Michailidou", "Elinor J. Sawyer", "Barbara Burwinkel", "Pascal Guénel", "Stig E. Bojesen", "Roger L. Milne", "Hermann Brenner", "Magdalena Lochmann", "Kristiina Aittomäki", "Thilo Dörk", "Sara Margolin", "Arto Mannermaa", "Diether Lambrechts", "Jenny Chang-Claude", "Paolo Radice", "Graham G. Giles", "Christopher A. Haiman", "Robert Winqvist", "Peter Devillee", "Montserrat Garcia-Closas", "Nils Schoof", "Maartje J. Hooning", "Angela Cox", "Paul D. P. Pharoah", "Anna Jakubowska", "Nick Orr", "Anna Gonzalez-Neira", "Guillermo Pita", "M. Rosario Alonso", "Per Hall", "Fergus J. Couch", "Jacques Simard", "David Altshuler", "Douglas F. Easton", "Georgia Chenevix-Trench", "Antonis C. Antoniou", "Kenneth Offit"], "doi"=>[nil, nil, nil, nil, nil, nil, nil, nil, nil, nil], "stats"=>{"downloads"=>23, "page_views"=>30, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Identification_of_a_i_BRCA2_i_Specific_Modifier_Locus_at_6p24_Related_to_Breast_Cancer_Risk/661516", "title"=>"Identification of a <i>BRCA2</i>-Specific Modifier Locus at 6p24 Related to Breast Cancer Risk", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2015-04-12 17:44:24"}
  • {"files"=>["https://ndownloader.figshare.com/files/1008516"], "description"=>"1<p>P-value was calculated based on the 1-degree of freedom score test.</p>", "links"=>[], "tags"=>["cancer", "ratios", "intervals", "loci", "p-values", "mutation"], "article_id"=>669042, "categories"=>["Genetics"], "users"=>["Mia M. Gaudet", "Karoline B. Kuchenbaecker", "Joseph Vijai", "Robert J. Klein", "Tomas Kirchhoff", "Lesley McGuffog", "Daniel Barrowdale", "Alison M. Dunning", "Andrew Lee", "Joe Dennis", "Sue Healey", "Ed Dicks", "Penny Soucy", "Olga M. Sinilnikova", "Vernon S. Pankratz", "Xianshu Wang", "Ronald C. Eldridge", "Daniel C. Tessier", "Daniel Vincent", "François Bacot", "Frans B. L. Hogervorst", "Susan Peock", "Dominique Stoppa-Lyonnet", "Paolo Peterlongo", "Rita K. Schmutzler", "Katherine L. Nathanson", "Marion Piedmonte", "Christian F. Singer", "Mads Thomassen", "Thomas V. O. Hansen", "Susan L. Neuhausen", "Ignacio Blanco", "Mark H. Greene", "Judith Garber", "Jeffrey N. Weitzel", "Irene L. Andrulis", "David E. Goldgar", "Emma D'Andrea", "Trinidad Caldés", "Heli Nevanlinna", "Ana Osorio", "Elizabeth J. van Rensburg", "Adalgeir Arason", "Gad Rennert", "Ans M. W. van den Ouweland", "Annemarie H. van der Hout", "Carolien M. Kets", "Cora M. Aalfs", "Juul T. Wijnen", "Margreet G. E. M. Ausems", "Debra Frost", "Steve Ellis", "Elena Fineberg", "Radka Platte", "D. Gareth Evans", "Chris Jacobs", "Julian Adlard", "Marc Tischkowitz", "Mary E. Porteous", "Francesca Damiola", "Lisa Golmard", "Laure Barjhoux", "Michel Longy", "Muriel Belotti", "Sandra Fert Ferrer", "Sylvie Mazoyer", "Amanda B. Spurdle", "Siranoush Manoukian", "Monica Barile", "Maurizio Genuardi", "Norbert Arnold", "Alfons Meindl", "Christian Sutter", "Barbara Wappenschmidt", "Susan M. Domchek", "Georg Pfeiler", "Eitan Friedman", "Uffe Birk Jensen", "Mark Robson", "Sohela Shah", "Conxi Lázaro", "Phuong L. Mai", "Javier Benitez", "Melissa C. Southey", "Marjanka K. Schmidt", "Peter A. Fasching", "Julian Peto", "Manjeet K. Humphreys", "Qin Wang", "Kyriaki Michailidou", "Elinor J. Sawyer", "Barbara Burwinkel", "Pascal Guénel", "Stig E. Bojesen", "Roger L. Milne", "Hermann Brenner", "Magdalena Lochmann", "Kristiina Aittomäki", "Thilo Dörk", "Sara Margolin", "Arto Mannermaa", "Diether Lambrechts", "Jenny Chang-Claude", "Paolo Radice", "Graham G. Giles", "Christopher A. Haiman", "Robert Winqvist", "Peter Devillee", "Montserrat Garcia-Closas", "Nils Schoof", "Maartje J. Hooning", "Angela Cox", "Paul D. P. Pharoah", "Anna Jakubowska", "Nick Orr", "Anna Gonzalez-Neira", "Guillermo Pita", "M. Rosario Alonso", "Per Hall", "Fergus J. Couch", "Jacques Simard", "David Altshuler", "Douglas F. Easton", "Georgia Chenevix-Trench", "Antonis C. Antoniou", "Kenneth Offit"], "doi"=>"https://dx.doi.org/10.1371/journal.pgen.1003173.t002", "stats"=>{"downloads"=>1, "page_views"=>11, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Breast_cancer_hazard_ratios_HR_and_95_confidence_intervals_CI_of_novel_breast_cancer_loci_with_P_values_of_association_8722_5_among_BRCA2_mutation_carriers_/669042", "title"=>"Breast cancer hazard ratios (HR) and 95% confidence intervals (CI) of novel breast cancer loci with P-values of association <10<sup>−5</sup> among <i>BRCA2</i> mutation carriers.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-03-27 02:30:42"}
  • {"files"=>["https://ndownloader.figshare.com/files/1008632"], "description"=>"1<p>Reporting status of the SNP is either previously reported or novel to this report.</p>2<p>p-value was calculated based on the 1-degree of freedom score test statistic.</p>3<p>rs311499 could not be designed onto the iCOGS array. A surrogate (r<sup>2</sup> = 1.0), rs311498, was included, however, and reported here.</p>4<p>Stronger associations were originally reported for the SNP, assuming a dominant or recessive model of the ‘risk allele’.</p>", "links"=>[], "tags"=>["allele", "ratios", "intervals", "published", "cancer", "loci", "mutation", "carriers", "reports", "icogs", "ordered"], "article_id"=>669159, "categories"=>["Genetics"], "users"=>["Mia M. Gaudet", "Karoline B. Kuchenbaecker", "Joseph Vijai", "Robert J. Klein", "Tomas Kirchhoff", "Lesley McGuffog", "Daniel Barrowdale", "Alison M. Dunning", "Andrew Lee", "Joe Dennis", "Sue Healey", "Ed Dicks", "Penny Soucy", "Olga M. Sinilnikova", "Vernon S. Pankratz", "Xianshu Wang", "Ronald C. Eldridge", "Daniel C. Tessier", "Daniel Vincent", "François Bacot", "Frans B. L. Hogervorst", "Susan Peock", "Dominique Stoppa-Lyonnet", "Paolo Peterlongo", "Rita K. Schmutzler", "Katherine L. Nathanson", "Marion Piedmonte", "Christian F. Singer", "Mads Thomassen", "Thomas V. O. Hansen", "Susan L. Neuhausen", "Ignacio Blanco", "Mark H. Greene", "Judith Garber", "Jeffrey N. Weitzel", "Irene L. Andrulis", "David E. Goldgar", "Emma D'Andrea", "Trinidad Caldés", "Heli Nevanlinna", "Ana Osorio", "Elizabeth J. van Rensburg", "Adalgeir Arason", "Gad Rennert", "Ans M. W. van den Ouweland", "Annemarie H. van der Hout", "Carolien M. Kets", "Cora M. Aalfs", "Juul T. Wijnen", "Margreet G. E. M. Ausems", "Debra Frost", "Steve Ellis", "Elena Fineberg", "Radka Platte", "D. Gareth Evans", "Chris Jacobs", "Julian Adlard", "Marc Tischkowitz", "Mary E. Porteous", "Francesca Damiola", "Lisa Golmard", "Laure Barjhoux", "Michel Longy", "Muriel Belotti", "Sandra Fert Ferrer", "Sylvie Mazoyer", "Amanda B. Spurdle", "Siranoush Manoukian", "Monica Barile", "Maurizio Genuardi", "Norbert Arnold", "Alfons Meindl", "Christian Sutter", "Barbara Wappenschmidt", "Susan M. Domchek", "Georg Pfeiler", "Eitan Friedman", "Uffe Birk Jensen", "Mark Robson", "Sohela Shah", "Conxi Lázaro", "Phuong L. Mai", "Javier Benitez", "Melissa C. Southey", "Marjanka K. Schmidt", "Peter A. Fasching", "Julian Peto", "Manjeet K. Humphreys", "Qin Wang", "Kyriaki Michailidou", "Elinor J. Sawyer", "Barbara Burwinkel", "Pascal Guénel", "Stig E. Bojesen", "Roger L. Milne", "Hermann Brenner", "Magdalena Lochmann", "Kristiina Aittomäki", "Thilo Dörk", "Sara Margolin", "Arto Mannermaa", "Diether Lambrechts", "Jenny Chang-Claude", "Paolo Radice", "Graham G. Giles", "Christopher A. Haiman", "Robert Winqvist", "Peter Devillee", "Montserrat Garcia-Closas", "Nils Schoof", "Maartje J. Hooning", "Angela Cox", "Paul D. P. Pharoah", "Anna Jakubowska", "Nick Orr", "Anna Gonzalez-Neira", "Guillermo Pita", "M. Rosario Alonso", "Per Hall", "Fergus J. Couch", "Jacques Simard", "David Altshuler", "Douglas F. Easton", "Georgia Chenevix-Trench", "Antonis C. Antoniou", "Kenneth Offit"], "doi"=>"https://dx.doi.org/10.1371/journal.pgen.1003173.t001", "stats"=>{"downloads"=>7, "page_views"=>26, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Per_allele_hazard_ratios_HR_and_95_confidence_intervals_CI_of_previously_published_breast_cancer_loci_among_BRCA2_mutation_carriers_from_previous_reports_and_from_the_iCOGS_array_ordered_by_statistical_significance_of_the_region_/669159", "title"=>"Per allele hazard ratios (HR) and 95% confidence intervals (CI) of previously published breast cancer loci among <i>BRCA2</i> mutation carriers from previous reports and from the iCOGS array, ordered by statistical significance of the region.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-03-27 02:32:39"}

PMC Usage Stats | Further Information

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Relative Metric

{"start_date"=>"2013-01-01T00:00:00Z", "end_date"=>"2013-12-31T00:00:00Z", "subject_areas"=>[{"subject_area"=>"/Social sciences/Sociology", "average_usage"=>[310, 523, 656, 780, 900, 1024, 1120, 1219, 1308, 1395, 1468, 1570, 1642]}]}
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