Moving from Data on Deaths to Public Health Policy in Agincourt, South Africa: Approaches to Analysing and Understanding Verbal Autopsy Findings
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{"title"=>"Moving from data on deaths to public health policy in Agincourt, South Africa: Approaches to analysing and understanding verbal autopsy findings", "type"=>"journal", "authors"=>[{"first_name"=>"Peter", "last_name"=>"Byass", "scopus_author_id"=>"7006527895"}, {"first_name"=>"Kathleen", "last_name"=>"Kahn", "scopus_author_id"=>"35452627500"}, {"first_name"=>"Edward", "last_name"=>"Fottrell", "scopus_author_id"=>"16021923800"}, {"first_name"=>"Mark A.", "last_name"=>"Collinson", "scopus_author_id"=>"7006784201"}, {"first_name"=>"Stephen M.", "last_name"=>"Tollman", "scopus_author_id"=>"7004554639"}], "year"=>2010, "source"=>"PLoS Medicine", "identifiers"=>{"scopus"=>"2-s2.0-77956818356", "doi"=>"10.1371/journal.pmed.1000325", "sgr"=>"77956818356", "isbn"=>"1549-1277 1549-1676", "pmid"=>"20808956", "issn"=>"15491277", "pui"=>"359586871"}, "id"=>"47690689-98ff-3254-80c9-c1859beb7665", "abstract"=>"BACKGROUND: Cause of death data are an essential source for public health planning, but their availability and quality are lacking in many parts of the world. Interviewing family and friends after a death has occurred (a procedure known as verbal autopsy) provides a source of data where deaths otherwise go unregistered; but sound methods for interpreting and analysing the ensuing data are essential. Two main approaches are commonly used: either physicians review individual interview material to arrive at probable cause of death, or probabilistic models process the data into likely cause(s). Here we compare and contrast these approaches as applied to a series of 6,153 deaths which occurred in a rural South African population from 1992 to 2005. We do not attempt to validate either approach in absolute terms.\\n\\nMETHODS AND FINDINGS: The InterVA probabilistic model was applied to a series of 6,153 deaths which had previously been reviewed by physicians. Physicians used a total of 250 cause-of-death codes, many of which occurred very rarely, while the model used 33. Cause-specific mortality fractions, overall and for population subgroups, were derived from the model's output, and the physician causes coded into comparable categories. The ten highest-ranking causes accounted for 83% and 88% of all deaths by physician interpretation and probabilistic modelling respectively, and eight of the highest ten causes were common to both approaches. Top-ranking causes of death were classified by population subgroup and period, as done previously for the physician-interpreted material. Uncertainty around the cause(s) of individual deaths was recognised as an important concept that should be reflected in overall analyses. One notably discrepant group involved pulmonary tuberculosis as a cause of death in adults aged over 65, and these cases are discussed in more detail, but the group only accounted for 3.5% of overall deaths.\\n\\nCONCLUSIONS: There were no differences between physician interpretation and probabilistic modelling that might have led to substantially different public health policy conclusions at the population level. Physician interpretation was more nuanced than the model, for example in identifying cancers at particular sites, but did not capture the uncertainty associated with individual cases. Probabilistic modelling was substantially cheaper and faster, and completely internally consistent. Both approaches characterised the rise of HIV-related mortality in this population during the period observed, and reached similar findings on other major causes of mortality. For many purposes probabilistic modelling appears to be the best available means of moving from data on deaths to public health actions. Please see later in the article for the Editors' Summary.", "link"=>"http://www.mendeley.com/research/moving-data-deaths-public-health-policy-agincourt-south-africa-approaches-analysing-understanding-ve", "reader_count"=>79, "reader_count_by_academic_status"=>{"Unspecified"=>3, "Professor > Associate Professor"=>5, "Librarian"=>1, "Researcher"=>18, "Student > Doctoral Student"=>8, "Student > Ph. D. Student"=>12, "Student > Postgraduate"=>4, "Student > Master"=>20, "Other"=>3, "Student > Bachelor"=>3, "Lecturer > Senior Lecturer"=>1, "Professor"=>1}, "reader_count_by_user_role"=>{"Unspecified"=>3, "Professor > Associate Professor"=>5, "Librarian"=>1, "Researcher"=>18, "Student > Doctoral Student"=>8, "Student > Ph. D. Student"=>12, "Student > Postgraduate"=>4, "Student > Master"=>20, "Other"=>3, "Student > Bachelor"=>3, "Lecturer > Senior Lecturer"=>1, "Professor"=>1}, "reader_count_by_subject_area"=>{"Unspecified"=>6, "Agricultural and Biological Sciences"=>1, "Business, Management and Accounting"=>1, "Veterinary Science and Veterinary Medicine"=>1, "Chemistry"=>1, "Computer Science"=>3, "Economics, Econometrics and Finance"=>1, "Engineering"=>1, "Nursing and Health Professions"=>5, "Biochemistry, Genetics and Molecular Biology"=>2, "Mathematics"=>3, "Medicine and Dentistry"=>33, "Psychology"=>2, "Social Sciences"=>19}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>33}, "Social Sciences"=>{"Social Sciences"=>19}, "Psychology"=>{"Psychology"=>2}, "Mathematics"=>{"Mathematics"=>3}, "Unspecified"=>{"Unspecified"=>6}, "Engineering"=>{"Engineering"=>1}, "Chemistry"=>{"Chemistry"=>1}, "Economics, Econometrics and Finance"=>{"Economics, Econometrics and Finance"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>1}, "Computer Science"=>{"Computer Science"=>3}, "Business, Management and Accounting"=>{"Business, Management and Accounting"=>1}, "Nursing and Health Professions"=>{"Nursing and Health Professions"=>5}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>2}, "Veterinary Science and Veterinary Medicine"=>{"Veterinary Science and Veterinary Medicine"=>1}}, "reader_count_by_country"=>{"Austria"=>1, "United States"=>2, "Tanzania"=>1, "Brazil"=>1, "South Africa"=>4, "United Kingdom"=>1, "Switzerland"=>1, "India"=>1}, "group_count"=>4}

Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/835321"], "description"=>"<p>Cause-specific mortality fractions from physician coding of the same dataset are shown for comparison in the second column.</p><p>*Cause specific mortality fraction, across all ages.</p>", "links"=>[], "tags"=>["autopsy", "findings", "deaths", "agincourt", "hdss", "occurring", "1992", "interpreted", "probabilistically", "interva"], "article_id"=>505673, "categories"=>["Cancer", "Neuroscience", "Information And Computing Sciences"], "users"=>["Peter Byass", "Kathleen Kahn", "Edward Fottrell", "Mark A. Collinson", "Stephen M. Tollman"], "doi"=>"https://dx.doi.org/10.1371/journal.pmed.1000325.t001", "stats"=>{"downloads"=>5, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Verbal_autopsy_findings_for_6_153_deaths_in_Agincourt_HDSS_occurring_between_1992_and_2005_by_likely_cause_and_age_8211_sex_group_using_cause_of_death_as_interpreted_probabilistically_by_the_InterVA_3_model_/505673", "title"=>"Verbal autopsy findings for 6,153 deaths in Agincourt HDSS occurring between 1992 and 2005, by likely cause and age–sex group, using cause of death as interpreted probabilistically by the InterVA 3 model.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-20 23:56:11"}
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  • {"files"=>["https://ndownloader.figshare.com/files/835353"], "description"=>"<p>*PPV: positive predictive value of the VA parameter for pulmonary tuberculosis.</p>", "links"=>[], "tags"=>["tuberculosis", "elders", "interpreted", "probabilistic", "autopsy"], "article_id"=>505721, "categories"=>["Cancer", "Neuroscience", "Information And Computing Sciences"], "users"=>["Peter Byass", "Kathleen Kahn", "Edward Fottrell", "Mark A. Collinson", "Stephen M. Tollman"], "doi"=>"https://dx.doi.org/10.1371/journal.pmed.1000325.t003", "stats"=>{"downloads"=>1, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Pulmonary_tuberculosis_as_a_possible_cause_of_death_among_1_492_elders_65_years_as_interpreted_by_physician_consensus_6_4_and_probabilistic_modelling_21_3_in_relation_to_selected_verbal_autopsy_parameters_/505721", "title"=>"Pulmonary tuberculosis as a possible cause of death among 1,492 elders (65+ years) as interpreted by physician consensus (6.4%) and probabilistic modelling (21.3%), in relation to selected verbal autopsy parameters.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-20 23:56:28"}

PMC Usage Stats | Further Information

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Relative Metric

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