MIRO and IRbase: IT Tools for the Epidemiological Monitoring of Insecticide Resistance in Mosquito Disease Vectors
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Mendeley | Further Information

{"title"=>"MIRO and IRbase: IT tools for the epidemiological monitoring of insecticide resistance in mosquito disease vectors", "type"=>"journal", "authors"=>[{"first_name"=>"Emmanuel", "last_name"=>"Dialynas", "scopus_author_id"=>"24921034100"}, {"first_name"=>"Pantelis", "last_name"=>"Topalis", "scopus_author_id"=>"6603108226"}, {"first_name"=>"John", "last_name"=>"Vontas", "scopus_author_id"=>"6603094639"}, {"first_name"=>"Christos", "last_name"=>"Louis", "scopus_author_id"=>"7103352753"}], "year"=>2009, "source"=>"PLoS Neglected Tropical Diseases", "identifiers"=>{"issn"=>"1935-2735", "pui"=>"355064756", "sgr"=>"68349090470", "doi"=>"10.1371/journal.pntd.0000465", "scopus"=>"2-s2.0-68349090470", "isbn"=>"1935-2735 (Electronic)\\r1935-2727 (Linking)", "pmid"=>"19547750"}, "id"=>"434c614e-c754-3266-836e-8522287308a9", "abstract"=>"BACKGROUND: Monitoring of insect vector populations with respect to their susceptibility to one or more insecticides is a crucial element of the strategies used for the control of arthropod-borne diseases. This management task can nowadays be achieved more efficiently when assisted by IT (Information Technology) tools, ranging from modern integrated databases to GIS (Geographic Information System). Here we describe an application ontology that we developed de novo, and a specially designed database that, based on this ontology, can be used for the purpose of controlling mosquitoes and, thus, the diseases that they transmit.\\n\\nMETHODOLOGY/PRINCIPAL FINDINGS: The ontology, named MIRO for Mosquito Insecticide Resistance Ontology, developed using the OBO-Edit software, describes all pertinent aspects of insecticide resistance, including specific methodology and mode of action. MIRO, then, forms the basis for the design and development of a dedicated database, IRbase, constructed using open source software, which can be used to retrieve data on mosquito populations in a temporally and spatially separate way, as well as to map the output using a Google Earth interface. The dependency of the database on the MIRO allows for a rational and efficient hierarchical search possibility.\\n\\nCONCLUSIONS/SIGNIFICANCE: The fact that the MIRO complies with the rules set forward by the OBO (Open Biomedical Ontologies) Foundry introduces cross-referencing with other biomedical ontologies and, thus, both MIRO and IRbase are suitable as parts of future comprehensive surveillance tools and decision support systems that will be used for the control of vector-borne diseases. MIRO is downloadable from and IRbase is accessible at VectorBase, the NIAID-sponsored open access database for arthropod vectors of disease.", "link"=>"http://www.mendeley.com/research/miro-irbase-it-tools-epidemiological-monitoring-insecticide-resistance-mosquito-disease-vectors", "reader_count"=>49, "reader_count_by_academic_status"=>{"Unspecified"=>2, "Professor > Associate Professor"=>4, "Researcher"=>16, "Student > Doctoral Student"=>2, "Student > Ph. D. Student"=>8, "Student > Postgraduate"=>2, "Student > Master"=>8, "Other"=>3, "Student > Bachelor"=>2, "Lecturer"=>1, "Professor"=>1}, "reader_count_by_user_role"=>{"Unspecified"=>2, "Professor > Associate Professor"=>4, "Researcher"=>16, "Student > Doctoral Student"=>2, "Student > Ph. D. Student"=>8, "Student > Postgraduate"=>2, "Student > Master"=>8, "Other"=>3, "Student > Bachelor"=>2, "Lecturer"=>1, "Professor"=>1}, "reader_count_by_subject_area"=>{"Unspecified"=>2, "Environmental Science"=>3, "Biochemistry, Genetics and Molecular Biology"=>3, "Mathematics"=>1, "Medicine and Dentistry"=>7, "Agricultural and Biological Sciences"=>25, "Veterinary Science and Veterinary Medicine"=>1, "Business, Management and Accounting"=>1, "Pharmacology, Toxicology and Pharmaceutical Science"=>1, "Social Sciences"=>2, "Computer Science"=>2, "Earth and Planetary Sciences"=>1}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>7}, "Social Sciences"=>{"Social Sciences"=>2}, "Earth and Planetary Sciences"=>{"Earth and Planetary Sciences"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>25}, "Computer Science"=>{"Computer Science"=>2}, "Business, Management and Accounting"=>{"Business, Management and Accounting"=>1}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>3}, "Mathematics"=>{"Mathematics"=>1}, "Unspecified"=>{"Unspecified"=>2}, "Environmental Science"=>{"Environmental Science"=>3}, "Pharmacology, Toxicology and Pharmaceutical Science"=>{"Pharmacology, Toxicology and Pharmaceutical Science"=>1}, "Veterinary Science and Veterinary Medicine"=>{"Veterinary Science and Veterinary Medicine"=>1}}, "reader_count_by_country"=>{"Greece"=>1, "United States"=>1, "Philippines"=>1, "Japan"=>1, "China"=>1, "Tanzania"=>1, "United Kingdom"=>1, "Portugal"=>1, "French Polynesia"=>1}, "group_count"=>2}

Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/893204"], "description"=>"<p>The figure shows, in a depth of 5 levels, the class “biological material” (A) and, within the “<i>Cellia</i>” subgenus, the <i>Anopheles gambiae</i> s.s.-related terms (B), that also include the chromosomal and molecular forms.</p>", "links"=>[], "tags"=>["computer science/information technology", "infectious diseases/neglected tropical diseases", "infectious diseases/tropical and travel-associated diseases", "computer science/ontology and logics"], "article_id"=>563661, "categories"=>["Infectious Diseases", "Medicine", "Information And Computing Sciences"], "users"=>["Emmanuel Dialynas", "Pantelis Topalis", "John Vontas", "Christos Louis"], "doi"=>"https://dx.doi.org/10.1371/journal.pntd.0000465.g002", "stats"=>{"downloads"=>0, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_biological_material_class_/563661", "title"=>"The “<i>biological material</i>” class.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 05:30:11"}
  • {"files"=>["https://ndownloader.figshare.com/files/893118"], "description"=>"<p>The figure shows the upper levels of the ontology. The small circles denote an “<i>is_a</i>” relation between the term and its parent, and small rectangles show the presence (plus) or absence (minus) of children for a given term. The children of the four “<i>biological material</i>”, “<i>insecticidal substance</i>”, “<i>method</i>” and “<i>resistance</i>” are shown in a depth of 2 levels. The “<i>gazetteer</i>” class has been loaded into MIRO (see <a href=\"http://www.plosntds.org/article/info:doi/10.1371/journal.pntd.0000465#s3\" target=\"_blank\">Results and Discussion</a>) and is therefore visible here.</p>", "links"=>[], "tags"=>["levels"], "article_id"=>563582, "categories"=>["Infectious Diseases", "Medicine", "Information And Computing Sciences"], "users"=>["Emmanuel Dialynas", "Pantelis Topalis", "John Vontas", "Christos Louis"], "doi"=>"https://dx.doi.org/10.1371/journal.pntd.0000465.g001", "stats"=>{"downloads"=>0, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_upper_levels_of_the_MIRO_/563582", "title"=>"The upper levels of the MIRO.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 05:29:40"}
  • {"files"=>["https://ndownloader.figshare.com/files/893611"], "description"=>"<p>The figure shows a screen shot of a search involving studies in Cote d'Ivoire. The pink “droplets” point to the sites of mosquito collections while the balloon that appears when clicking on any one of them includes summary data for the collection site. A link to the respective full report is also provided in the balloon.</p>", "links"=>[], "tags"=>["providing"], "article_id"=>564071, "categories"=>["Infectious Diseases", "Medicine", "Information And Computing Sciences"], "users"=>["Emmanuel Dialynas", "Pantelis Topalis", "John Vontas", "Christos Louis"], "doi"=>"https://dx.doi.org/10.1371/journal.pntd.0000465.g006", "stats"=>{"downloads"=>1, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_A_map_output_providing_summary_information_/564071", "title"=>"A map output providing summary information.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 05:32:23"}
  • {"files"=>["https://ndownloader.figshare.com/files/893339"], "description"=>"<p>The “<i>resistance</i>” class has been opened to show the different contents. The black boxes denote an “<i>agent_in</i>” relation.</p>", "links"=>[], "tags"=>["computer science/information technology", "infectious diseases/neglected tropical diseases", "infectious diseases/tropical and travel-associated diseases", "computer science/ontology and logics"], "article_id"=>563796, "categories"=>["Infectious Diseases", "Medicine", "Information And Computing Sciences"], "users"=>["Emmanuel Dialynas", "Pantelis Topalis", "John Vontas", "Christos Louis"], "doi"=>"https://dx.doi.org/10.1371/journal.pntd.0000465.g004", "stats"=>{"downloads"=>0, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_resistance_class_/563796", "title"=>"The “<i>resistance</i>” class.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 05:30:55"}
  • {"files"=>["https://ndownloader.figshare.com/files/893407"], "description"=>"<p>The figure shows the different tables that make up the schema. 1 and * denote a “one to many” relationship.</p>", "links"=>[], "tags"=>["irbase"], "article_id"=>563870, "categories"=>["Infectious Diseases", "Medicine", "Information And Computing Sciences"], "users"=>["Emmanuel Dialynas", "Pantelis Topalis", "John Vontas", "Christos Louis"], "doi"=>"https://dx.doi.org/10.1371/journal.pntd.0000465.g005", "stats"=>{"downloads"=>0, "page_views"=>15, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_IRbase_schema_/563870", "title"=>"The IRbase schema.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 05:31:18"}
  • {"files"=>["https://ndownloader.figshare.com/files/893276"], "description"=>"<p>The figure shows the list of the groups of substances with differing modes of action containing the individual insecticides.</p>", "links"=>[], "tags"=>["groups", "insecticides"], "article_id"=>563735, "categories"=>["Infectious Diseases", "Medicine", "Information And Computing Sciences"], "users"=>["Emmanuel Dialynas", "Pantelis Topalis", "John Vontas", "Christos Louis"], "doi"=>"https://dx.doi.org/10.1371/journal.pntd.0000465.g003", "stats"=>{"downloads"=>1, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_groups_of_insecticides_in_MIRO_/563735", "title"=>"The groups of insecticides in MIRO.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 05:30:37"}

PMC Usage Stats | Further Information

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