Extensive Polycistronism and Antisense Transcription in the Mammalian Hox Clusters
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{"title"=>"Extensive polycistronism and antisense transcription in the mammalian Hox cluster", "type"=>"journal", "authors"=>[{"first_name"=>"Gaëll", "last_name"=>"Mainguy", "scopus_author_id"=>"6507788275"}, {"first_name"=>"Jan", "last_name"=>"Koster", "scopus_author_id"=>"7102855300"}, {"first_name"=>"Joost", "last_name"=>"Woltering", "scopus_author_id"=>"6507495356"}, {"first_name"=>"Hans", "last_name"=>"Jansen", "scopus_author_id"=>"56497522400"}, {"first_name"=>"Anthony", "last_name"=>"Durtson", "scopus_author_id"=>"25640536200"}], "year"=>2007, "source"=>"PLoS ONE", "identifiers"=>{"issn"=>"19326203", "scopus"=>"2-s2.0-55849137262", "sgr"=>"55849137262", "pui"=>"352646396", "isbn"=>"1932-6203 (Electronic)", "pmid"=>"17406680", "doi"=>"10.1371/journal.pone.0000356"}, "id"=>"1b190512-596c-3040-a639-1d45e8d939e0", "abstract"=>"The Hox clusters play a crucial role in body patterning during animal development. They encode both Hox transcription factor and micro-RNA genes that are activated in a precise temporal and spatial sequence that follows their chromosomal order. These remarkable collinear properties confer functional unit status for Hox clusters. We developed the TranscriptView platform to establish high resolution transcriptional profiling and report here that transcription in the Hox clusters is far more complex than previously described in both human and mouse. Unannotated transcripts can represent up to 60% of the total transcriptional output of a cluster. In particular, we identified 14 non-coding Transcriptional Units antisense to Hox genes, 10 of which (70%) have a detectable mouse homolog. Most of these Transcriptional Units in both human and mouse present conserved sizeable sequences (>40 bp) overlapping Hox transcripts, suggesting that these Hox antisense transcripts are functional. Hox clusters also display at least seven polycistronic clusters, i.e., different genes being co-transcribed on long isoforms (up to 30 kb). This work provides a reevaluated framework for understanding Hox gene function and dys-function. Such extensive transcriptions may provide a structural explanation for Hox clustering.", "link"=>"http://www.mendeley.com/research/extensive-polycistronism-antisense-transcription-mammalian-hox-cluster", "reader_count"=>64, "reader_count_by_academic_status"=>{"Professor > Associate Professor"=>9, "Researcher"=>21, "Student > Doctoral Student"=>1, "Student > Ph. D. Student"=>14, "Student > Postgraduate"=>1, "Student > Master"=>6, "Other"=>1, "Student > Bachelor"=>3, "Lecturer"=>1, "Lecturer > Senior Lecturer"=>2, "Professor"=>5}, "reader_count_by_user_role"=>{"Professor > Associate Professor"=>9, "Researcher"=>21, "Student > Doctoral Student"=>1, "Student > Ph. D. Student"=>14, "Student > Postgraduate"=>1, "Student > Master"=>6, "Other"=>1, "Student > Bachelor"=>3, "Lecturer"=>1, "Lecturer > Senior Lecturer"=>2, "Professor"=>5}, "reader_count_by_subject_area"=>{"Unspecified"=>1, "Biochemistry, Genetics and Molecular Biology"=>11, "Medicine and Dentistry"=>5, "Agricultural and Biological Sciences"=>44, "Business, Management and Accounting"=>1, "Computer Science"=>2}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>5}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>44}, "Computer Science"=>{"Computer Science"=>2}, "Business, Management and Accounting"=>{"Business, Management and Accounting"=>1}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>11}, "Unspecified"=>{"Unspecified"=>1}}, "reader_count_by_country"=>{"Belgium"=>1, "United States"=>1, "China"=>1, "Japan"=>1, "Brazil"=>2, "United Kingdom"=>1, "Mexico"=>1, "France"=>2, "Germany"=>1, "Spain"=>1}, "group_count"=>3}

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Figshare

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  • {"files"=>["https://ndownloader.figshare.com/files/951819"], "description"=>"<p>Human HoxB cluster has been repeat-masked. Deduced exons retrieved from TranscriptView are in blue. Human repeats are depicted by colored squares. Note that simple repeats, represented by yellow squares are distributed throughout the HoxB cluster independently of the gene content.</p>", "links"=>[], "tags"=>["excluded", "transcribed"], "article_id"=>622138, "categories"=>["Developmental Biology"], "users"=>["Gaëll Mainguy", "Jan Koster", "Joost Woltering", "Hans Jansen", "Antony Durston"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0000356.g003"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Transposons_are_excluded_from_transcribed_regions_/622138", "title"=>"Transposons are excluded from transcribed regions.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 12:40:53"}
  • {"files"=>["https://ndownloader.figshare.com/files/951860"], "description"=>"°<p>Species where the SAS is observed</p>*<p>Number of independent SAS per gene.</p>**<p>Nucleotide identity. In bold when found in mRNA, in gDNA otherwise.</p>°°<p>Antisense sequences from human that are matching Hox mRNA from mouse</p>", "links"=>[], "tags"=>["antisense"], "article_id"=>622176, "categories"=>["Developmental Biology"], "users"=>["Gaëll Mainguy", "Jan Koster", "Joost Woltering", "Hans Jansen", "Antony Durston"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0000356.t002"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Sense_AntiSense_overlaps_/622176", "title"=>"Sense AntiSense overlaps", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-21 12:41:08"}
  • {"files"=>["https://ndownloader.figshare.com/files/951889"], "description"=>"<p>Conservation of TU AS between human and mouse</p>", "links"=>[], "tags"=>["tu"], "article_id"=>622212, "categories"=>["Developmental Biology"], "users"=>["Gaëll Mainguy", "Jan Koster", "Joost Woltering", "Hans Jansen", "Antony Durston"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0000356.t003"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Conservation_of_TU_AS_between_human_and_mouse_/622212", "title"=>"Conservation of TU AS between human and mouse", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-21 12:41:17"}
  • {"files"=>["https://ndownloader.figshare.com/files/951922"], "description"=>"*<p>Not present in the databases, identified by RT-PCR.</p><p>Species: Cp: Guineapig, Dr : Zebrafish, Hs : Human, Mm : Mouse.</p>", "links"=>[], "tags"=>["hox"], "article_id"=>622241, "categories"=>["Developmental Biology"], "users"=>["Gaëll Mainguy", "Jan Koster", "Joost Woltering", "Hans Jansen", "Antony Durston"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0000356.t001"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Polycistronism_in_the_Human_Hox_cluster_/622241", "title"=>"Polycistronism in the Human Hox cluster", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-21 12:41:26"}

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  • {"unique-ip"=>"14", "full-text"=>"15", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"5"}
  • {"unique-ip"=>"5", "full-text"=>"5", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"9"}
  • {"unique-ip"=>"5", "full-text"=>"4", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"2"}
  • {"unique-ip"=>"6", "full-text"=>"5", "pdf"=>"4", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"3"}
  • {"unique-ip"=>"6", "full-text"=>"9", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"4"}
  • {"unique-ip"=>"9", "full-text"=>"11", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"5"}
  • {"unique-ip"=>"5", "full-text"=>"6", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"8"}
  • {"unique-ip"=>"5", "full-text"=>"4", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"9"}
  • {"unique-ip"=>"4", "full-text"=>"3", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"10"}

Relative Metric

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