How Global Is the Global Biodiversity Information Facility?
Publication Date
November 07, 2007
Journal
PLOS ONE
Authors
Chris Yesson, Peter W. Brewer, Tim Sutton, Neil Caithness, et al
Volume
2
Issue
11
Pages
e1124
DOI
https://dx.plos.org/10.1371/journal.pone.0001124
Publisher URL
http://journals.plos.org/plosone/article?id=10.1371%2Fjournal.pone.0001124
PubMed
http://www.ncbi.nlm.nih.gov/pubmed/17987112
PubMed Central
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2043490
Europe PMC
http://europepmc.org/abstract/MED/17987112
Web of Science
000207459000008
Scopus
42549166500
Mendeley
http://www.mendeley.com/research/global-global-biodiversity-information-facility
Events
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Mendeley | Further Information

{"title"=>"How global is the global biodiversity information facility?", "type"=>"journal", "authors"=>[{"first_name"=>"Chris", "last_name"=>"Yesson", "scopus_author_id"=>"8853289200"}, {"first_name"=>"Peter W.", "last_name"=>"Brewer", "scopus_author_id"=>"57196599485"}, {"first_name"=>"Tim", "last_name"=>"Sutton", "scopus_author_id"=>"55165598200"}, {"first_name"=>"Neil", "last_name"=>"Caithness", "scopus_author_id"=>"6603462286"}, {"first_name"=>"Jaspreet S.", "last_name"=>"Pahwa", "scopus_author_id"=>"8945612000"}, {"first_name"=>"Mikhaila", "last_name"=>"Burgess", "scopus_author_id"=>"15065134200"}, {"first_name"=>"W. Alec", "last_name"=>"Gray", "scopus_author_id"=>"35570174900"}, {"first_name"=>"Richard J.", "last_name"=>"White", "scopus_author_id"=>"55257012000"}, {"first_name"=>"Andrew C.", "last_name"=>"Jones", "scopus_author_id"=>"56900015400"}, {"first_name"=>"Frank A.", "last_name"=>"Bisby", "scopus_author_id"=>"6602665238"}, {"first_name"=>"Alastair", "last_name"=>"Culham", "scopus_author_id"=>"6603853400"}], "year"=>2007, "source"=>"PLoS ONE", "identifiers"=>{"pmid"=>"17987112", "scopus"=>"2-s2.0-42549166500", "doi"=>"10.1371/journal.pone.0001124", "issn"=>"19326203", "sgr"=>"42549166500", "pui"=>"351586852", "isbn"=>"1932-6203 ST - How Global Is the Global Biodiversity Information Facility?"}, "id"=>"2e7b7ba1-186a-3b73-b26e-be17df738987", "abstract"=>"There is a concerted global effort to digitize biodiversity occurrence data from herbarium and museum collections that together offer an unparalleled archive of life on Earth over the past few centuries. The Global Biodiversity Information Facility provides the largest single gateway to these data. Since 2004 it has provided a single point of access to specimen data from databases of biological surveys and collections. Biologists now have rapid access to more than 120 million observations, for use in many biological analyses. We investigate the quality and coverage of data digitally available, from the perspective of a biologist seeking distribution data for spatial analysis on a global scale. We present an example of automatic verification of geographic data using distributions from the International Legume Database and Information Service to test empirically, issues of geographic coverage and accuracy. There are over 1/2 million records covering 31% of all Legume species, and 84% of these records pass geographic validation. These data are not yet a global biodiversity resource for all species, or all countries. A user will encounter many biases and gaps in these data which should be understood before data are used or analyzed. The data are notably deficient in many of the world's biodiversity hotspots. The deficiencies in data coverage can be resolved by an increased application of resources to digitize and publish data throughout these most diverse regions. But in the push to provide ever more data online, we should not forget that consistent data quality is of paramount importance if the data are to be useful in capturing a meaningful picture of life on Earth.", "link"=>"http://www.mendeley.com/research/global-global-biodiversity-information-facility", "reader_count"=>378, "reader_count_by_academic_status"=>{"Unspecified"=>4, "Professor > Associate Professor"=>14, "Librarian"=>4, "Researcher"=>119, "Student > Doctoral Student"=>18, "Student > Ph. D. 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Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/463929"], "description"=>"<div><p>There is a concerted global effort to digitize biodiversity occurrence data from herbarium and museum collections that together offer an unparalleled archive of life on Earth over the past few centuries. The Global Biodiversity Information Facility provides the largest single gateway to these data. Since 2004 it has provided a single point of access to specimen data from databases of biological surveys and collections. Biologists now have rapid access to more than 120 million observations, for use in many biological analyses. We investigate the quality and coverage of data digitally available, from the perspective of a biologist seeking distribution data for spatial analysis on a global scale. We present an example of automatic verification of geographic data using distributions from the International Legume Database and Information Service to test empirically, issues of geographic coverage and accuracy. There are over 1/2 million records covering 31% of all Legume species, and 84% of these records pass geographic validation. These data are not yet a global biodiversity resource for all species, or all countries. A user will encounter many biases and gaps in these data which should be understood before data are used or analyzed. The data are notably deficient in many of the world's biodiversity hotspots. The deficiencies in data coverage can be resolved by an increased application of resources to digitize and publish data throughout these most diverse regions. But in the push to provide ever more data online, we should not forget that consistent data quality is of paramount importance if the data are to be useful in capturing a meaningful picture of life on Earth.</p></div>", "links"=>[], "tags"=>["biodiversity"], "article_id"=>151456, "categories"=>["Ecology", "Science Policy", "Cell Biology", "Information And Computing Sciences", "Evolutionary Biology", "Biological Sciences"], "users"=>["Chris Yesson", "Peter W. Brewer", "Tim Sutton", "Neil Caithness", "Jaspreet S. Pahwa", "Mikhaila Burgess", "W. Alec Gray", "Richard J. White", "Andrew C. Jones", "Frank A. Bisby", "Alastair Culham"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0001124", "stats"=>{"downloads"=>3, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/How_Global_Is_the_Global_Biodiversity_Information_Facility_/151456", "title"=>"How Global Is the Global Biodiversity Information Facility?", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2007-11-07 00:24:16"}
  • {"files"=>["https://ndownloader.figshare.com/files/942499"], "description"=>"<p>Species coverage on GBIF at a continental scale (TDWG level 1 continents).</p>", "links"=>[], "tags"=>["gbif", "continental"], "article_id"=>612896, "categories"=>["Ecology", "Science Policy", "Plant Biology", "Information And Computing Sciences", "Evolutionary Biology", "Biological Sciences"], "users"=>["Chris Yesson", "Peter W. Brewer", "Tim Sutton", "Neil Caithness", "Jaspreet S. Pahwa", "Mikhaila Burgess", "W. Alec Gray", "Richard J. White", "Andrew C. Jones", "Frank A. Bisby", "Alastair Culham"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0001124.g010", "stats"=>{"downloads"=>1, "page_views"=>11, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Species_coverage_on_GBIF_at_a_continental_scale_TDWG_level_1_continents_/612896", "title"=>"Species coverage on GBIF at a continental scale (TDWG level 1 continents).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2007-11-07 00:48:16"}
  • {"files"=>["https://ndownloader.figshare.com/files/942010"], "description"=>"<p>GBIF points classified ‘Lat/Long exactly zero’</p>", "links"=>[], "tags"=>["points", "classified"], "article_id"=>612414, "categories"=>["Ecology", "Science Policy", "Plant Biology", "Information And Computing Sciences", "Evolutionary Biology", "Biological Sciences"], "users"=>["Chris Yesson", "Peter W. Brewer", "Tim Sutton", "Neil Caithness", "Jaspreet S. Pahwa", "Mikhaila Burgess", "W. Alec Gray", "Richard J. White", "Andrew C. Jones", "Frank A. Bisby", "Alastair Culham"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0001124.g004", "stats"=>{"downloads"=>9, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_GBIF_points_classified_8216_Lat_Long_exactly_zero_8217_/612414", "title"=>"GBIF points classified ‘Lat/Long exactly zero’", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2007-11-07 00:40:14"}
  • {"files"=>["https://ndownloader.figshare.com/files/942574"], "description"=>"<p>Co-ordinates are displayed by points.</p>", "links"=>[], "tags"=>["coastline", "referenced", "grids"], "article_id"=>612972, "categories"=>["Ecology", "Science Policy", "Plant Biology", "Information And Computing Sciences", "Evolutionary Biology", "Biological Sciences"], "users"=>["Chris Yesson", "Peter W. Brewer", "Tim Sutton", "Neil Caithness", "Jaspreet S. Pahwa", "Mikhaila Burgess", "W. Alec Gray", "Richard J. White", "Andrew C. Jones", "Frank A. Bisby", "Alastair Culham"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0001124.g011", "stats"=>{"downloads"=>0, "page_views"=>1, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Hypothetical_example_of_a_point_near_a_coastline_which_cross_the_land_sea_barrier_when_referenced_on_grids_of_188_189_and_1_degree_resolution_/612972", "title"=>"Hypothetical example of a point near a coastline which cross the land/sea barrier when referenced on grids of ¼, ½, and 1 degree resolution.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2007-11-07 00:49:32"}
  • {"files"=>["https://ndownloader.figshare.com/files/942433"], "description"=>"<p>Global Legume coverage from GBIF data per TDWG level 4 area.</p>", "links"=>[], "tags"=>["legume", "gbif", "tdwg"], "article_id"=>612826, "categories"=>["Ecology", "Science Policy", "Plant Biology", "Information And Computing Sciences", "Evolutionary Biology", "Biological Sciences"], "users"=>["Chris Yesson", "Peter W. Brewer", "Tim Sutton", "Neil Caithness", "Jaspreet S. Pahwa", "Mikhaila Burgess", "W. Alec Gray", "Richard J. White", "Andrew C. Jones", "Frank A. Bisby", "Alastair Culham"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0001124.g009", "stats"=>{"downloads"=>2, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Global_Legume_coverage_from_GBIF_data_per_TDWG_level_4_area_/612826", "title"=>"Global Legume coverage from GBIF data per TDWG level 4 area.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2007-11-07 00:47:06"}
  • {"files"=>["https://ndownloader.figshare.com/files/941952"], "description"=>"<p>GBIF points classified ‘Lat/Long error’</p>", "links"=>[], "tags"=>["points", "classified"], "article_id"=>612349, "categories"=>["Ecology", "Science Policy", "Plant Biology", "Information And Computing Sciences", "Evolutionary Biology", "Biological Sciences"], "users"=>["Chris Yesson", "Peter W. Brewer", "Tim Sutton", "Neil Caithness", "Jaspreet S. Pahwa", "Mikhaila Burgess", "W. Alec Gray", "Richard J. White", "Andrew C. Jones", "Frank A. Bisby", "Alastair Culham"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0001124.g003", "stats"=>{"downloads"=>1, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_GBIF_points_classified_8216_Lat_Long_error_8217_/612349", "title"=>"GBIF points classified ‘Lat/Long error’", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2007-11-07 00:39:09"}
  • {"files"=>["https://ndownloader.figshare.com/files/942736"], "description"=>"<p>GBIF data for global the hotspots of Mittermeier <i>et al</i>. <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0001124#pone.0001124-Mittermeier1\" target=\"_blank\">[19]</a></p>", "links"=>[], "tags"=>["hotspots", "mittermeier"], "article_id"=>613128, "categories"=>["Ecology", "Science Policy", "Plant Biology", "Information And Computing Sciences", "Evolutionary Biology", "Biological Sciences"], "users"=>["Chris Yesson", "Peter W. Brewer", "Tim Sutton", "Neil Caithness", "Jaspreet S. Pahwa", "Mikhaila Burgess", "W. Alec Gray", "Richard J. White", "Andrew C. Jones", "Frank A. Bisby", "Alastair Culham"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0001124.t003", "stats"=>{"downloads"=>2, "page_views"=>31, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_GBIF_data_for_global_the_hotspots_of_Mittermeier_et_al_19_/613128", "title"=>"GBIF data for global the hotspots of Mittermeier <i>et al</i>. [19]", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2007-11-07 00:52:08"}
  • {"files"=>["https://ndownloader.figshare.com/files/941808"], "description"=>"<p>All valid points collected from GBIF database</p>", "links"=>[], "tags"=>["points", "gbif"], "article_id"=>612212, "categories"=>["Ecology", "Science Policy", "Plant Biology", "Information And Computing Sciences", "Evolutionary Biology", "Biological Sciences"], "users"=>["Chris Yesson", "Peter W. Brewer", "Tim Sutton", "Neil Caithness", "Jaspreet S. Pahwa", "Mikhaila Burgess", "W. Alec Gray", "Richard J. White", "Andrew C. Jones", "Frank A. Bisby", "Alastair Culham"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0001124.g001", "stats"=>{"downloads"=>2, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_All_valid_points_collected_from_GBIF_database_/612212", "title"=>"All valid points collected from GBIF database", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2007-11-07 00:36:52"}
  • {"files"=>["https://ndownloader.figshare.com/files/942172"], "description"=>"<p>GBIF points classified ‘Far from valid’</p>", "links"=>[], "tags"=>["points", "classified"], "article_id"=>612567, "categories"=>["Ecology", "Science Policy", "Plant Biology", "Information And Computing Sciences", "Evolutionary Biology", "Biological Sciences"], "users"=>["Chris Yesson", "Peter W. Brewer", "Tim Sutton", "Neil Caithness", "Jaspreet S. Pahwa", "Mikhaila Burgess", "W. Alec Gray", "Richard J. White", "Andrew C. Jones", "Frank A. Bisby", "Alastair Culham"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0001124.g006", "stats"=>{"downloads"=>0, "page_views"=>1, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_GBIF_points_classified_8216_Far_from_valid_8217_/612567", "title"=>"GBIF points classified ‘Far from valid’", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2007-11-07 00:42:47"}
  • {"files"=>["https://ndownloader.figshare.com/files/941875"], "description"=>"<p>GBIF points classified ‘In the sea’</p>", "links"=>[], "tags"=>["points", "classified"], "article_id"=>612276, "categories"=>["Ecology", "Science Policy", "Plant Biology", "Information And Computing Sciences", "Evolutionary Biology", "Biological Sciences"], "users"=>["Chris Yesson", "Peter W. Brewer", "Tim Sutton", "Neil Caithness", "Jaspreet S. Pahwa", "Mikhaila Burgess", "W. Alec Gray", "Richard J. White", "Andrew C. Jones", "Frank A. Bisby", "Alastair Culham"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0001124.g002", "stats"=>{"downloads"=>0, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_GBIF_points_classified_8216_In_the_sea_8217_/612276", "title"=>"GBIF points classified ‘In the sea’", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2007-11-07 00:37:56"}
  • {"files"=>["https://ndownloader.figshare.com/files/942688"], "description"=>"<p>Species coverage of GBIF records using ILDIS to define total species numbers</p>", "links"=>[], "tags"=>["gbif", "records", "ildis"], "article_id"=>613085, "categories"=>["Ecology", "Science Policy", "Plant Biology", "Information And Computing Sciences", "Evolutionary Biology", "Biological Sciences"], "users"=>["Chris Yesson", "Peter W. Brewer", "Tim Sutton", "Neil Caithness", "Jaspreet S. Pahwa", "Mikhaila Burgess", "W. Alec Gray", "Richard J. White", "Andrew C. Jones", "Frank A. Bisby", "Alastair Culham"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0001124.t002", "stats"=>{"downloads"=>2, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Species_coverage_of_GBIF_records_using_ILDIS_to_define_total_species_numbers_/613085", "title"=>"Species coverage of GBIF records using ILDIS to define total species numbers", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2007-11-07 00:51:25"}
  • {"files"=>["https://ndownloader.figshare.com/files/942326"], "description"=>"<p>The top 10 data suppliers of Legume species</p>", "links"=>[], "tags"=>["10", "suppliers", "legume"], "article_id"=>612718, "categories"=>["Ecology", "Science Policy", "Plant Biology", "Information And Computing Sciences", "Evolutionary Biology", "Biological Sciences"], "users"=>["Chris Yesson", "Peter W. Brewer", "Tim Sutton", "Neil Caithness", "Jaspreet S. Pahwa", "Mikhaila Burgess", "W. Alec Gray", "Richard J. White", "Andrew C. Jones", "Frank A. Bisby", "Alastair Culham"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0001124.g008", "stats"=>{"downloads"=>1, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_top_10_data_suppliers_of_Legume_species_/612718", "title"=>"The top 10 data suppliers of Legume species", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2007-11-07 00:45:18"}
  • {"files"=>["https://ndownloader.figshare.com/files/942651"], "description"=>"<p>Top GBIF data providers for Legume data. Note: the species count is not cumulative as species data can be from more than one provider.</p>", "links"=>[], "tags"=>["gbif", "providers", "legume", "cumulative"], "article_id"=>613047, "categories"=>["Ecology", "Science Policy", "Plant Biology", "Information And Computing Sciences", "Evolutionary Biology", "Biological Sciences"], "users"=>["Chris Yesson", "Peter W. Brewer", "Tim Sutton", "Neil Caithness", "Jaspreet S. Pahwa", "Mikhaila Burgess", "W. Alec Gray", "Richard J. White", "Andrew C. Jones", "Frank A. Bisby", "Alastair Culham"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0001124.t001", "stats"=>{"downloads"=>1, "page_views"=>2, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Top_GBIF_data_providers_for_Legume_data_Note_the_species_count_is_not_cumulative_as_species_data_can_be_from_more_than_one_provider_/613047", "title"=>"Top GBIF data providers for Legume data. Note: the species count is not cumulative as species data can be from more than one provider.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2007-11-07 00:50:47"}
  • {"files"=>["https://ndownloader.figshare.com/files/942086"], "description"=>"<p>GBIF points classified ‘Near valid’</p>", "links"=>[], "tags"=>["points", "classified"], "article_id"=>612485, "categories"=>["Ecology", "Science Policy", "Plant Biology", "Information And Computing Sciences", "Evolutionary Biology", "Biological Sciences"], "users"=>["Chris Yesson", "Peter W. Brewer", "Tim Sutton", "Neil Caithness", "Jaspreet S. Pahwa", "Mikhaila Burgess", "W. Alec Gray", "Richard J. White", "Andrew C. Jones", "Frank A. Bisby", "Alastair Culham"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0001124.g005", "stats"=>{"downloads"=>0, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_GBIF_points_classified_8216_Near_valid_8217_/612485", "title"=>"GBIF points classified ‘Near valid’", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2007-11-07 00:41:25"}
  • {"files"=>["https://ndownloader.figshare.com/files/942246"], "description"=>"<p>The top 10 data suppliers of Legume records</p>", "links"=>[], "tags"=>["10", "suppliers", "legume"], "article_id"=>612640, "categories"=>["Ecology", "Science Policy", "Plant Biology", "Information And Computing Sciences", "Evolutionary Biology", "Biological Sciences"], "users"=>["Chris Yesson", "Peter W. Brewer", "Tim Sutton", "Neil Caithness", "Jaspreet S. Pahwa", "Mikhaila Burgess", "W. Alec Gray", "Richard J. White", "Andrew C. Jones", "Frank A. Bisby", "Alastair Culham"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0001124.g007", "stats"=>{"downloads"=>1, "page_views"=>10, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_top_10_data_suppliers_of_Legume_records_/612640", "title"=>"The top 10 data suppliers of Legume records", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2007-11-07 00:44:00"}
  • {"files"=>["https://ndownloader.figshare.com/files/942773"], "description"=>"*<p>Source: Index Herbariorum <a href=\"http://sciweb.nybg.org/science2/IndexHerbariorum.asp\" target=\"_blank\">http://sciweb.nybg.org/science2/IndexHerbariorum.asp</a> Accessed 10/2005. # Source: <a href=\"http://www.gbif.org\" target=\"_blank\">http://www.gbif.org</a> Accessed 10/2005. Note: K now has c. 140,000 records, GH has c.220,000 records, and US has c.766,000 records on GBIF (09/2007), some other institutions have increased their online records substantially during the past 24 months.</p>", "links"=>[], "tags"=>["Herbaria", "gbif"], "article_id"=>613171, "categories"=>["Ecology", "Science Policy", "Plant Biology", "Information And Computing Sciences", "Evolutionary Biology", "Biological Sciences"], "users"=>["Chris Yesson", "Peter W. Brewer", "Tim Sutton", "Neil Caithness", "Jaspreet S. Pahwa", "Mikhaila Burgess", "W. Alec Gray", "Richard J. White", "Andrew C. Jones", "Frank A. Bisby", "Alastair Culham"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0001124.t004", "stats"=>{"downloads"=>1, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Large_herbaria_and_their_contribution_to_GBIF_at_the_time_of_this_analysis_/613171", "title"=>"Large herbaria and their contribution to GBIF at the time of this analysis.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2007-11-07 00:52:51"}

PMC Usage Stats | Further Information

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Relative Metric

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