Estimation of Isolation Times of the Island Species in the Drosophila simulans Complex from Multilocus DNA Sequence Data
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{"title"=>"Estimation of isolation times of the island species in the Drosophila simulans complex from multilocus DNA sequence data", "type"=>"journal", "authors"=>[{"first_name"=>"Shannon R.", "last_name"=>"McDermott", "scopus_author_id"=>"24529115500"}, {"first_name"=>"Richard M.", "last_name"=>"Kliman", "scopus_author_id"=>"6701461437"}], "year"=>2008, "source"=>"PLoS ONE", "identifiers"=>{"scopus"=>"2-s2.0-49149121062", "sgr"=>"49149121062", "issn"=>"19326203", "doi"=>"10.1371/journal.pone.0002442", "pmid"=>"18560591", "isbn"=>"1932-6203 (Electronic)\\n1932-6203 (Linking)", "pui"=>"352133887"}, "id"=>"7636e759-28eb-3e5f-a390-c91f0bed290e", "abstract"=>"BACKGROUND: The Drosophila simulans species complex continues to serve as an important model system for the study of new species formation. The complex is comprised of the cosmopolitan species, D. simulans, and two island endemics, D. mauritiana and D. sechellia. A substantial amount of effort has gone into reconstructing the natural history of the complex, in part to infer the context in which functional divergence among the species has arisen. In this regard, a key parameter to be estimated is the initial isolation time (t) of each island species. Loci in regions of low recombination have lower divergence within the complex than do other loci, yet divergence from D. melanogaster is similar for both classes. This might reflect gene flow of the low-recombination loci subsequent to initial isolation, but it might also reflect differential effects of changing population size on the two recombination classes of loci when the low-recombination loci are subject to genetic hitchhiking or pseudohitchhiking\\n\\nMETHODOLOGY/PRINCIPAL FINDINGS: New DNA sequence variation data for 17 loci corroborate the prior observation from 13 loci that DNA sequence divergence is reduced in genes of low recombination. Two models are presented to estimate t and other relevant parameters (substitution rate correction factors in lineages leading to the island species and, in the case of the 4-parameter model, the ratio of ancestral to extant effective population size) from the multilocus DNA sequence data.\\n\\nCONCLUSIONS/SIGNIFICANCE: In general, it appears that both island species were isolated at about the same time, here estimated at approximately 250,000 years ago. It also appears that the difference in divergence patterns of genes in regions of low and higher recombination can be reconciled by allowing a modestly larger effective population size for the ancestral population than for extant D. simulans.", "link"=>"http://www.mendeley.com/research/estimation-isolation-times-island-species-drosophila-simulans-complex-multilocus-dna-sequence-data", "reader_count"=>41, "reader_count_by_academic_status"=>{"Professor > Associate Professor"=>5, "Researcher"=>13, "Student > Doctoral Student"=>1, "Student > Ph. D. Student"=>11, "Student > Master"=>3, "Other"=>2, "Student > Bachelor"=>1, "Lecturer > Senior Lecturer"=>1, "Professor"=>4}, "reader_count_by_user_role"=>{"Professor > Associate Professor"=>5, "Researcher"=>13, "Student > Doctoral Student"=>1, "Student > Ph. D. Student"=>11, "Student > Master"=>3, "Other"=>2, "Student > Bachelor"=>1, "Lecturer > Senior Lecturer"=>1, "Professor"=>4}, "reader_count_by_subject_area"=>{"Environmental Science"=>1, "Biochemistry, Genetics and Molecular Biology"=>5, "Agricultural and Biological Sciences"=>33, "Medicine and Dentistry"=>1, "Earth and Planetary Sciences"=>1}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>1}, "Earth and Planetary Sciences"=>{"Earth and Planetary Sciences"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>33}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>5}, "Environmental Science"=>{"Environmental Science"=>1}}, "reader_count_by_country"=>{"Austria"=>2, "United States"=>4, "Italy"=>1, "Germany"=>1}, "group_count"=>1}

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/928462"], "description"=>"a<p>0 = HR (high-recombination, 1 = LR (low recombination); <i>CG15216</i> is located at polytene map position 40F1; <i>CG32006</i>, <i>ci</i>, <i>ey</i> and <i>Sox102F</i> are on the fourth chromosome; <i>ase</i> is located at 1B4.</p>b<p>number of aligned sites.</p>c<p>number of aligned sites with bases in every sequence.</p>d<p>accession numbers are for previously unpublished sequences.</p>", "links"=>[], "tags"=>["Evolutionary biology", "genetics and genomics/population genetics"], "article_id"=>598925, "categories"=>["Genetics", "Evolutionary Biology"], "users"=>["Shannon R. McDermott", "Richard M. Kliman"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0002442.t001", "stats"=>{"downloads"=>1, "page_views"=>9, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Loci_used_in_the_study_/598925", "title"=>"Loci used in the study.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-21 10:10:28"}
  • {"files"=>["https://ndownloader.figshare.com/files/928589"], "description"=>"<p>Estimates of <i>t</i>, <i>g</i>, <i>f</i><sub>0</sub> and <i>f</i><sub>1</sub> using the 4-parameter model.</p>", "links"=>[], "tags"=>["4-parameter"], "article_id"=>599038, "categories"=>["Genetics", "Evolutionary Biology"], "users"=>["Shannon R. McDermott", "Richard M. Kliman"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0002442.t005", "stats"=>{"downloads"=>0, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Estimates_of_t_g_f_0_and_f_1_using_the_4_parameter_model_/599038", "title"=>"Estimates of <i>t</i>, <i>g</i>, <i>f</i><sub>0</sub> and <i>f</i><sub>1</sub> using the 4-parameter model.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-21 10:11:04"}
  • {"files"=>["https://ndownloader.figshare.com/files/928529"], "description"=>"a<p>number of sites analyzed (see <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0002442#pone-0002442-t001\" target=\"_blank\">Table 1</a>).</p>", "links"=>[], "tags"=>["divergence", "low-recombination", "high-recombination", "loci"], "article_id"=>598985, "categories"=>["Genetics", "Evolutionary Biology"], "users"=>["Shannon R. McDermott", "Richard M. Kliman"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0002442.t003", "stats"=>{"downloads"=>0, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Polymorphism_and_Divergence_per_site_in_low_recombination_and_high_recombination_loci_unweighted_average_/598985", "title"=>"Polymorphism and Divergence (per site) in low-recombination and high-recombination loci (unweighted average).", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-21 10:10:45"}
  • {"files"=>["https://ndownloader.figshare.com/files/928492"], "description"=>"a<p>0 = HR locus, 1 = LR locus.</p>", "links"=>[], "tags"=>["Evolutionary biology", "genetics and genomics/population genetics"], "article_id"=>598951, "categories"=>["Genetics", "Evolutionary Biology"], "users"=>["Shannon R. McDermott", "Richard M. Kliman"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0002442.t002", "stats"=>{"downloads"=>0, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Divergence_and_Drosophila_simulans_polymorphism_/598951", "title"=>"Divergence and <i>Drosophila simulans</i> polymorphism.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-21 10:10:36"}
  • {"files"=>["https://ndownloader.figshare.com/files/928637"], "description"=>"a<p>parameter estimates calculated using θ̂<sub>π</sub>.</p>b<p>2-parameter model.</p>c<p>4-parameter model.</p>", "links"=>[], "tags"=>["estimates", "noncoding"], "article_id"=>599093, "categories"=>["Genetics", "Evolutionary Biology"], "users"=>["Shannon R. McDermott", "Richard M. Kliman"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0002442.t007", "stats"=>{"downloads"=>1, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Parameter_estimates_using_synonymous_replacement_or_noncoding_sites_a_/599093", "title"=>"Parameter estimates using synonymous, replacement or noncoding sites<sup>a</sup>.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-21 10:11:21"}
  • {"files"=>["https://ndownloader.figshare.com/files/928561"], "description"=>"<p>Estimates of <i>t</i> and <i>f</i> using the 2-parameter model.</p>", "links"=>[], "tags"=>["2-parameter"], "article_id"=>599011, "categories"=>["Genetics", "Evolutionary Biology"], "users"=>["Shannon R. McDermott", "Richard M. Kliman"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0002442.t004", "stats"=>{"downloads"=>0, "page_views"=>10, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Estimates_of_t_and_f_using_the_2_parameter_model_/599011", "title"=>"Estimates of <i>t</i> and <i>f</i> using the 2-parameter model.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-21 10:10:56"}
  • {"files"=>["https://ndownloader.figshare.com/files/928106"], "description"=>"<p>Shown are distributions using θ̂<sub>π</sub> as the estimate of <i>D. simulans</i> polymorphism. Suffixes in legend: loci, bootstrapping among both loci and of sites within loci; sites, bootstrapping of sites, but not loci; all, all LR loci; noCG15216, <i>CG15216</i> excluded from LR loci.</p>", "links"=>[], "tags"=>["bootstrapped", "sets", "2-parameter"], "article_id"=>598562, "categories"=>["Genetics", "Evolutionary Biology"], "users"=>["Shannon R. McDermott", "Richard M. Kliman"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0002442.g001", "stats"=>{"downloads"=>0, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Distribution_of_parameters_estimated_from_10_000_bootstrapped_data_sets_using_the_2_parameter_model_for_D_simulans_and_D_mauritiana_/598562", "title"=>"Distribution of parameters estimated from 10,000 bootstrapped data sets using the 2-parameter model for <i>D. simulans</i> and <i>D. mauritiana</i>.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 10:08:33"}
  • {"files"=>["https://ndownloader.figshare.com/files/928161"], "description"=>"<p>See <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0002442#pone-0002442-g001\" target=\"_blank\">Figure 1</a> for details.</p>", "links"=>[], "tags"=>["bootstrapped", "sets", "2-parameter"], "article_id"=>598614, "categories"=>["Genetics", "Evolutionary Biology"], "users"=>["Shannon R. McDermott", "Richard M. Kliman"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0002442.g002", "stats"=>{"downloads"=>1, "page_views"=>12, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Distribution_of_parameters_estimated_from_10_000_bootstrapped_data_sets_using_the_2_parameter_model_for_D_simulans_and_D_sechellia_/598614", "title"=>"Distribution of parameters estimated from 10,000 bootstrapped data sets using the 2-parameter model for <i>D. simulans</i> and <i>D. sechellia</i>.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 10:08:54"}
  • {"files"=>["https://ndownloader.figshare.com/files/928244"], "description"=>"<p>Open markers (intersected by dashed horizontal and vertical lines) indicate estimates of <i>t</i> corresponding to <i>f</i> under the 2-parameter model. All other points indicate values of <i>t</i> corresponding to arbitrary values of <i>f</i> ranging from 0.5 to 3.0. HR, high-recombination loci; LR, low-recombination loci.</p>", "links"=>[], "tags"=>["estimates", "substitution"], "article_id"=>598699, "categories"=>["Genetics", "Evolutionary Biology"], "users"=>["Shannon R. McDermott", "Richard M. Kliman"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0002442.g003", "stats"=>{"downloads"=>1, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Sensitivity_of_isolation_time_estimates_to_substitution_rate_along_the_island_species_lineage_/598699", "title"=>"Sensitivity of isolation time estimates to substitution rate along the island species lineage.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 10:09:21"}
  • {"files"=>["https://ndownloader.figshare.com/files/928614"], "description"=>"a<p>parameter estimates calculated using θ̂<sub>π</sub>; estimates under the 2-parameter model for HR loci without <i>CG15216</i> are the same as those with this locus.</p>b<p>parameter estimates using c167.4 (when available) and either md106 or md199.</p>c<p>parameter estimates using either c167.4, md106 or md199 (see text).</p>", "links"=>[], "tags"=>["estimates", "inclusion", "african"], "article_id"=>599065, "categories"=>["Genetics", "Evolutionary Biology"], "users"=>["Shannon R. McDermott", "Richard M. Kliman"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0002442.t006", "stats"=>{"downloads"=>0, "page_views"=>1, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Parameter_estimates_following_inclusion_of_additional_D_simulans_data_from_African_lines_/599065", "title"=>"Parameter estimates following inclusion of additional <i>D. simulans</i> data from African lines.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-21 10:11:12"}
  • {"files"=>["https://ndownloader.figshare.com/files/928298"], "description"=>"<p>See <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0002442#pone-0002442-g001\" target=\"_blank\">Figure 1</a> for details.</p>", "links"=>[], "tags"=>["bootstrapped", "sets", "4-parameter"], "article_id"=>598754, "categories"=>["Genetics", "Evolutionary Biology"], "users"=>["Shannon R. McDermott", "Richard M. Kliman"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0002442.g004", "stats"=>{"downloads"=>0, "page_views"=>1, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Distribution_of_parameters_estimated_from_10_000_bootstrapped_data_sets_using_the_4_parameter_model_for_D_simulans_and_D_mauritiana_/598754", "title"=>"Distribution of parameters estimated from 10,000 bootstrapped data sets using the 4-parameter model for <i>D. simulans</i> and <i>D. mauritiana</i>.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 10:09:37"}
  • {"files"=>["https://ndownloader.figshare.com/files/928390"], "description"=>"<p>See <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0002442#pone-0002442-g001\" target=\"_blank\">Figure 1</a> for details.</p>", "links"=>[], "tags"=>["bootstrapped", "sets", "4-parameter"], "article_id"=>598849, "categories"=>["Genetics", "Evolutionary Biology"], "users"=>["Shannon R. McDermott", "Richard M. Kliman"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0002442.g005", "stats"=>{"downloads"=>0, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Distribution_of_parameters_estimated_from_10_000_bootstrapped_data_sets_using_the_4_parameter_model_for_D_simulans_and_D_sechellia_/598849", "title"=>"Distribution of parameters estimated from 10,000 bootstrapped data sets using the 4-parameter model for <i>D. simulans</i> and <i>D. sechellia</i>.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 10:10:04"}

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  • {"unique-ip"=>"3", "full-text"=>"2", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2013", "month"=>"1"}
  • {"unique-ip"=>"1", "full-text"=>"1", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2013", "month"=>"3"}
  • {"unique-ip"=>"1", "full-text"=>"1", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2013", "month"=>"2"}
  • {"unique-ip"=>"1", "full-text"=>"1", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2013", "month"=>"4"}
  • {"unique-ip"=>"1", "full-text"=>"1", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2012", "month"=>"11"}
  • {"unique-ip"=>"1", "full-text"=>"0", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2013", "month"=>"6"}
  • {"unique-ip"=>"1", "full-text"=>"1", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2013", "month"=>"7"}
  • {"unique-ip"=>"1", "full-text"=>"1", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2013", "month"=>"9"}
  • {"unique-ip"=>"1", "full-text"=>"0", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2013", "month"=>"10"}
  • {"unique-ip"=>"1", "full-text"=>"1", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2013", "month"=>"12"}
  • {"unique-ip"=>"1", "full-text"=>"0", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2014", "month"=>"3"}
  • {"unique-ip"=>"3", "full-text"=>"1", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2014", "month"=>"5"}
  • {"unique-ip"=>"1", "full-text"=>"1", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2014", "month"=>"6"}
  • {"unique-ip"=>"1", "full-text"=>"1", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2014", "month"=>"4"}
  • {"unique-ip"=>"2", "full-text"=>"2", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"4"}
  • {"unique-ip"=>"1", "full-text"=>"1", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"5"}
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  • {"unique-ip"=>"5", "full-text"=>"5", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"7"}
  • {"unique-ip"=>"1", "full-text"=>"0", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"2"}
  • {"unique-ip"=>"1", "full-text"=>"0", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"8"}
  • {"unique-ip"=>"6", "full-text"=>"3", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"9"}
  • {"unique-ip"=>"2", "full-text"=>"1", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"1", "year"=>"2015", "month"=>"10"}
  • {"unique-ip"=>"8", "full-text"=>"4", "pdf"=>"4", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2014", "month"=>"7"}
  • {"unique-ip"=>"2", "full-text"=>"0", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2014", "month"=>"8"}
  • {"unique-ip"=>"6", "full-text"=>"1", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2014", "month"=>"9"}
  • {"unique-ip"=>"11", "full-text"=>"5", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"3", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2014", "month"=>"10"}
  • {"unique-ip"=>"3", "full-text"=>"0", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"2"}
  • {"unique-ip"=>"5", "full-text"=>"1", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2014", "month"=>"11"}
  • {"unique-ip"=>"3", "full-text"=>"1", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2014", "month"=>"12"}
  • {"unique-ip"=>"5", "full-text"=>"3", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"1"}
  • {"unique-ip"=>"3", "full-text"=>"2", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"11"}
  • {"unique-ip"=>"7", "full-text"=>"3", "pdf"=>"4", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"12"}
  • {"unique-ip"=>"4", "full-text"=>"3", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"1"}
  • {"unique-ip"=>"2", "full-text"=>"0", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"3"}
  • {"unique-ip"=>"2", "full-text"=>"1", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"4"}
  • {"unique-ip"=>"1", "full-text"=>"1", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"5"}
  • {"unique-ip"=>"4", "full-text"=>"4", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"6"}
  • {"unique-ip"=>"1", "full-text"=>"0", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"7"}
  • {"unique-ip"=>"5", "full-text"=>"4", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"9"}
  • {"unique-ip"=>"2", "full-text"=>"3", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"10"}
  • {"unique-ip"=>"2", "full-text"=>"1", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"11"}
  • {"unique-ip"=>"2", "full-text"=>"2", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"12"}
  • {"unique-ip"=>"9", "full-text"=>"2", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"1"}
  • {"unique-ip"=>"1", "full-text"=>"2", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"2"}
  • {"unique-ip"=>"1", "full-text"=>"0", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"5"}
  • {"unique-ip"=>"2", "full-text"=>"0", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"7"}
  • {"unique-ip"=>"3", "full-text"=>"2", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"8"}
  • {"unique-ip"=>"4", "full-text"=>"3", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"10"}
  • {"unique-ip"=>"2", "full-text"=>"2", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"3"}
  • {"unique-ip"=>"3", "full-text"=>"3", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"1"}
  • {"unique-ip"=>"11", "full-text"=>"11", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"5"}
  • {"unique-ip"=>"1", "full-text"=>"1", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"4"}
  • {"unique-ip"=>"4", "full-text"=>"2", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"6"}
  • {"unique-ip"=>"2", "full-text"=>"3", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"8"}
  • {"unique-ip"=>"2", "full-text"=>"2", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"10"}
  • {"unique-ip"=>"6", "full-text"=>"7", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"11"}
  • {"unique-ip"=>"3", "full-text"=>"3", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"9"}
  • {"unique-ip"=>"7", "full-text"=>"7", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"12"}
  • {"unique-ip"=>"10", "full-text"=>"4", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"2"}
  • {"unique-ip"=>"5", "full-text"=>"5", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"3"}
  • {"unique-ip"=>"3", "full-text"=>"2", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"4"}
  • {"unique-ip"=>"6", "full-text"=>"5", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"5"}
  • {"unique-ip"=>"3", "full-text"=>"3", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"8"}
  • {"unique-ip"=>"5", "full-text"=>"2", "pdf"=>"6", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"9"}
  • {"unique-ip"=>"7", "full-text"=>"6", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"10"}
  • {"unique-ip"=>"6", "full-text"=>"2", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"12"}
  • {"unique-ip"=>"10", "full-text"=>"6", "pdf"=>"6", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2020", "month"=>"2"}

Relative Metric

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Net::HTTPInternalServerError

Source
CrossRef
Time
2020-03-02 05:19:02 UTC
Target URL
http://doi.crossref.org/servlet/getForwardLinks?usr=plos&pwd=plos1&doi=10.1371%2Fjournal.pone.0002442
Trace

/app/models/concerns/networkable.rb:21:in `get_result'
/app/models/source.rb:165:in `get_data'
/app/models/retrieval_status.rb:47:in `perform_get_data'
/app/jobs/source_job.rb:52:in `block (2 levels) in perform'
/app/jobs/source_job.rb:51:in `block in perform'
/app/jobs/source_job.rb:35:in `each'
/app/jobs/source_job.rb:35:in `perform'