Some Rare Indo-Pacific Coral Species Are Probable Hybrids
Publication Date
September 24, 2008
Journal
PLOS ONE
Authors
Zoe T. Richards, Madeleine J. H. Van Oppen, Carden C. Wallace, Bette L. Willis, et al
Volume
3
Issue
9
Pages
e3240
DOI
https://dx.plos.org/10.1371/journal.pone.0003240
Publisher URL
http://journals.plos.org/plosone/article?id=10.1371%2Fjournal.pone.0003240
PubMed
http://www.ncbi.nlm.nih.gov/pubmed/18813338
PubMed Central
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2531234
Europe PMC
http://europepmc.org/abstract/MED/18813338
Web of Science
000264431800001
Scopus
54749149414
Mendeley
http://www.mendeley.com/research/some-rare-indopacific-coral-species-probable-hybrids
Events
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Mendeley | Further Information

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Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/920707"], "description"=>"<p>The figure shows the majority rule (>50%) consensus tree obtained in a Bayesian analysis of mitochondrial sequence data for thirty-five Indo-Pacific <i>Acropora</i> species with the Caribbean species <i>Acropora cervicornis</i> defined as outgroup. Bayesian analysis used likelihood settings from best-fit model (HKY+I+G) selected by hLRT in MrModeltest 2.2 <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0003240#pone.0003240-Nylander1\" target=\"_blank\">[12]</a>: 5 million generations; burn in  = 20,000. Numbers above branches are posterior probability values supporting the topology shown and clades are labelled according to previous <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0003240#pone.0003240-vanOppen3\" target=\"_blank\">[5]</a>, <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0003240#pone.0003240-Mrquez1\" target=\"_blank\">[9]</a> analyses. Numbers after species names indicate the coral colonies from which the sequences were obtained.</p>", "links"=>[], "tags"=>["mitochondrial"], "article_id"=>591152, "categories"=>["Ecology", "Molecular Biology", "Evolutionary Biology"], "users"=>["Zoe T. Richards", "Madeleine J. H. van Oppen", "Carden C. Wallace", "Bette L. Willis", "David J. Miller"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0003240.g004", "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Phylogenetic_analysis_of_mitochondrial_sequence_data_/591152", "title"=>"Phylogenetic analysis of mitochondrial sequence data.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2008-09-24 00:19:12"}
  • {"files"=>["https://ndownloader.figshare.com/files/920526"], "description"=>"<p>These data are based on numbers of records in the World Wide <i>Acropora</i> Database (n = 1523 sites; <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0003240#pone.0003240-Wallace1\" target=\"_blank\">[6]</a> and Wallace unpublished). (b). Several rare species, such as <i>A. pichoni</i> shown here, are likely to be unidirectional hybrids and occupy atypical habitats. Photo credit: Maria Beger.</p>", "links"=>[], "tags"=>["abundance"], "article_id"=>590979, "categories"=>["Ecology", "Molecular Biology", "Evolutionary Biology"], "users"=>["Zoe T. Richards", "Madeleine J. H. van Oppen", "Carden C. Wallace", "Bette L. Willis", "David J. Miller"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0003240.g001", "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_a_Global_abundance_of_the_Acropora_species_used_in_this_study_/590979", "title"=>"(a). Global abundance of the <i>Acropora</i> species used in this study.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2008-09-24 00:16:19"}
  • {"files"=>["https://ndownloader.figshare.com/files/920578"], "description"=>"<p>Mean (±SE) global census sizes are shown as black histograms, and predicted effective population sizes as red histograms. Data for <i>A. tortuosa</i> are omitted, as the mean global census size for this species (Supplementary <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0003240#pone.0003240.s002\" target=\"_blank\">Table S1</a>) is more than two-fold higher than for <i>A. spathulata</i> (of those shown, the species with the largest global census size).</p>", "links"=>[], "tags"=>["included"], "article_id"=>591028, "categories"=>["Ecology", "Molecular Biology", "Evolutionary Biology"], "users"=>["Zoe T. Richards", "Madeleine J. H. van Oppen", "Carden C. Wallace", "Bette L. Willis", "David J. Miller"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0003240.g002", "stats"=>{"downloads"=>1, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Effective_population_size_data_for_rare_Acropora_species_included_in_this_study_/591028", "title"=>"Effective population size data for rare <i>Acropora</i> species included in this study.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2008-09-24 00:17:08"}
  • {"files"=>["https://ndownloader.figshare.com/files/454804", "https://ndownloader.figshare.com/files/454869", "https://ndownloader.figshare.com/files/454936"], "description"=>"<div><h3>Background</h3><p>Coral reefs worldwide face a variety of threats and many coral species are increasingly endangered. It is often assumed that rare coral species face higher risks of extinction because they have very small effective population sizes, a predicted consequence of which is decreased genetic diversity and adaptive potential.</p><h3>Methodology/Principal Findings</h3><p>Here we show that some Indo-Pacific members of the coral genus <em>Acropora</em> have very small global population sizes and are likely to be unidirectional hybrids. Whether this reflects hybrid origins or secondary hybridization following speciation is unclear.</p><h3>Conclusions/Significance</h3><p>The interspecific gene flow demonstrated here implies increased genetic diversity and adaptive potential in these coral species. Rare <em>Acropora</em> species may therefore be less vulnerable to extinction than has often been assumed because of their propensity for hybridization and introgression, which may increase their adaptive potential.</p></div>", "links"=>[], "tags"=>["indo-pacific", "coral", "are", "probable", "hybrids"], "article_id"=>149610, "categories"=>["Ecology", "Molecular Biology", "Evolutionary Biology"], "users"=>["Zoe T. Richards", "Madeleine J. H. van Oppen", "Carden C. Wallace", "Bette L. Willis", "David J. Miller"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0003240.s001", "https://dx.doi.org/10.1371/journal.pone.0003240.s002", "https://dx.doi.org/10.1371/journal.pone.0003240.s003"], "stats"=>{"downloads"=>11, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Some_Rare_Indo_Pacific_Coral_Species_Are_Probable_Hybrids/149610", "title"=>"Some Rare Indo-Pacific Coral Species Are Probable Hybrids", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2008-09-24 02:40:10"}
  • {"files"=>["https://ndownloader.figshare.com/files/920777"], "description"=>"<p>Biological characteristics of species included in this study.</p>", "links"=>[], "tags"=>["included"], "article_id"=>591228, "categories"=>["Ecology", "Molecular Biology", "Evolutionary Biology"], "users"=>["Zoe T. Richards", "Madeleine J. H. van Oppen", "Carden C. Wallace", "Bette L. Willis", "David J. Miller"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0003240.t001", "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Biological_characteristics_of_species_included_in_this_study_/591228", "title"=>"Biological characteristics of species included in this study.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2008-09-24 00:20:28"}
  • {"files"=>["https://ndownloader.figshare.com/files/920650"], "description"=>"<p>The figure shows the majority rule (>50%) consensus tree obtained in a Bayesian analysis of nuclear sequence data for the thirty-five <i>Acropora</i> species included in this study, with <i>Isopora cuneata</i> defined as outgroup. Bayesian analyses used likelihood settings from best-fit model (HKY+G) selected by hLRT in MrModeltest 2.2 <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0003240#pone.0003240-Nylander1\" target=\"_blank\">[12]</a>: 5 million generations; burn in  = 50,000. Numbers above branches are posterior probability values supporting the topology shown and clades are labelled according to previous <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0003240#pone.0003240-vanOppen3\" target=\"_blank\">[5]</a>, <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0003240#pone.0003240-Mrquez1\" target=\"_blank\">[9]</a> analyses. Numbers after species names indicate the coral colonies from which the sequences were obtained; where more than one sequence was obtained per colony, the clone identity is given after an asterisk. Note that in some cases multiple clones (sometimes from different species) had identical sequences.</p>", "links"=>[], "tags"=>["paxc"], "article_id"=>591098, "categories"=>["Ecology", "Molecular Biology", "Evolutionary Biology"], "users"=>["Zoe T. Richards", "Madeleine J. H. van Oppen", "Carden C. Wallace", "Bette L. Willis", "David J. Miller"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0003240.g003", "stats"=>{"downloads"=>0, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Phylogenetic_analysis_of_PaxC_data_/591098", "title"=>"Phylogenetic analysis of PaxC data.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2008-09-24 00:18:18"}
  • {"files"=>["https://ndownloader.figshare.com/files/920746"], "description"=>"<p>Asterisks indicate posterior probability values of 100% (black) or >70% (red); for clarity, asterisks are shown only at nodes affecting the positions of sequences from <i>A. papillare</i>, <i>A. pichoni</i>, <i>A. kimbeensis</i>, <i>A. spathulata</i> and <i>A. tortuosa.</i></p>", "links"=>[], "tags"=>["mitochondrial"], "article_id"=>591194, "categories"=>["Ecology", "Molecular Biology", "Evolutionary Biology"], "users"=>["Zoe T. Richards", "Madeleine J. H. van Oppen", "Carden C. Wallace", "Bette L. Willis", "David J. Miller"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0003240.g005", "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Comparison_of_nuclear_and_mitochondrial_phylogenies_/591194", "title"=>"Comparison of nuclear and mitochondrial phylogenies.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2008-09-24 00:19:54"}

PMC Usage Stats | Further Information

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