Genetically-Based Olfactory Signatures Persist Despite Dietary Variation
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{"title"=>"Genetically-based olfactory signatures persist despite dietary variation", "type"=>"journal", "authors"=>[{"first_name"=>"Jae", "last_name"=>"Kwak", "scopus_author_id"=>"7202649012"}, {"first_name"=>"Alan", "last_name"=>"Willse", "scopus_author_id"=>"6602871551"}, {"first_name"=>"Koichi", "last_name"=>"Matsumura", "scopus_author_id"=>"25632252600"}, {"first_name"=>"Maryanne Curran", "last_name"=>"Opiekun", "scopus_author_id"=>"25632958600"}, {"first_name"=>"Weiguang", "last_name"=>"Yi", "scopus_author_id"=>"57197569036"}, {"first_name"=>"George", "last_name"=>"Preti", "scopus_author_id"=>"7005105150"}, {"first_name"=>"Kunio", "last_name"=>"Yamazaki", "scopus_author_id"=>"7402217727"}, {"first_name"=>"Gary K.", "last_name"=>"Beauchamp", "scopus_author_id"=>"7102529648"}], "year"=>2008, "source"=>"PLoS ONE", "identifiers"=>{"sgr"=>"56349129841", "pmid"=>"18974891", "scopus"=>"2-s2.0-56349129841", "pui"=>"352694722", "isbn"=>"1932-6203 (Electronic)", "issn"=>"19326203", "doi"=>"10.1371/journal.pone.0003591"}, "id"=>"05304050-c796-3d07-9691-b9f04e7ead05", "abstract"=>"Individual mice have a unique odor, or odortype, that facilitates individual recognition. Odortypes, like other phenotypes, can be influenced by genetic and environmental variation. The genetic influence derives in part from genes of the major histocompatibility complex (MHC). A major environmental influence is diet, which could obscure the genetic contribution to odortype. Because odortype stability is a prerequisite for individual recognition under normal behavioral conditions, we investigated whether MHC-determined urinary odortypes of inbred mice can be identified in the face of large diet-induced variation. Mice trained to discriminate urines from panels of mice that differed both in diet and MHC type found the diet odor more salient in generalization trials. Nevertheless, when mice were trained to discriminate mice with only MHC differences (but on the same diet), they recognized the MHC difference when tested with urines from mice on a different diet. This indicates that MHC odor profiles remain despite large dietary variation. Chemical analyses of urinary volatile organic compounds (VOCs) extracted by solid phase microextraction (SPME) and analyzed by gas chromatography/mass spectrometry (GC/MS) are consistent with this inference. Although diet influenced VOC variation more than MHC, with algorithmic training (supervised classification) MHC types could be accurately discriminated across different diets. Thus, although there are clear diet effects on urinary volatile profiles, they do not obscure MHC effects.", "link"=>"http://www.mendeley.com/research/geneticallybased-olfactory-signatures-persist-despite-dietary-variation", "reader_count"=>37, "reader_count_by_academic_status"=>{"Student > Doctoral Student"=>3, "Researcher"=>11, "Student > Ph. D. Student"=>12, "Other"=>2, "Student > Master"=>2, "Student > Bachelor"=>3, "Lecturer > Senior Lecturer"=>1, "Professor"=>3}, "reader_count_by_user_role"=>{"Student > Doctoral Student"=>3, "Researcher"=>11, "Student > Ph. D. Student"=>12, "Other"=>2, "Student > Master"=>2, "Student > Bachelor"=>3, "Lecturer > Senior Lecturer"=>1, "Professor"=>3}, "reader_count_by_subject_area"=>{"Engineering"=>1, "Biochemistry, Genetics and Molecular Biology"=>1, "Agricultural and Biological Sciences"=>26, "Neuroscience"=>1, "Psychology"=>2, "Chemistry"=>3, "Social Sciences"=>1, "Computer Science"=>1, "Economics, Econometrics and Finance"=>1}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>1}, "Neuroscience"=>{"Neuroscience"=>1}, "Chemistry"=>{"Chemistry"=>3}, "Social Sciences"=>{"Social Sciences"=>1}, "Psychology"=>{"Psychology"=>2}, "Economics, Econometrics and Finance"=>{"Economics, Econometrics and Finance"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>26}, "Computer Science"=>{"Computer Science"=>1}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>1}}, "reader_count_by_country"=>{"New Zealand"=>2, "Czech Republic"=>1, "United Kingdom"=>1, "Spain"=>2, "India"=>1}, "group_count"=>4}

Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/917820"], "description"=>"<p>Mice trained to discriminate urine odors of mice differing in both the MHC and in diet generalized this response to diet changes but not to MHC.</p>*<p>Diet: Diet S = Synthetic diet; Diet L = Laboratory Rodent diet.</p>†<p>on training trials reinforced to go to B6 Diet S over B6-H2<sup>k</sup> Diet L.</p>‡<p>on training trials reinforced to go to B6-H2<sup>k</sup> Diet S over B6 Diet L.</p>§<p>p<0.0001, binominal test.</p>a<p>The plus sign (+) refers to a choice that is correct or concordant with training whereas the minus sign (−) refers to a response that was incorrect or not concordant with training.</p>b<p>The numbers in the tables represent the generalization trials only.</p>", "links"=>[], "tags"=>["urine", "odor", "choices"], "article_id"=>588269, "categories"=>["Infectious Diseases", "Chemistry"], "users"=>["Jae Kwak", "Alan Willse", "Koichi Matsumura", "Maryanne Curran Opiekun", "Weiguang Yi", "George Preti", "Kunio Yamazaki", "Gary K. Beauchamp"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0003591.t001", "stats"=>{"downloads"=>1, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Responses_to_urine_odor_choices_for_Behavior_Experiment_1_/588269", "title"=>"Responses to urine odor choices for Behavior Experiment 1.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2008-10-31 02:17:49"}
  • {"files"=>["https://ndownloader.figshare.com/files/917612"], "description"=>"<p>The importance measure is assessed by mean decrease in the Gini index (higher values are more important), a relative measure of group (MHC) differences explained. See the text for details. (T) = tentatively identified from mass spectral data.</p>", "links"=>[], "tags"=>["ranked", "discriminating", "mhc", "types"], "article_id"=>588062, "categories"=>["Infectious Diseases", "Chemistry"], "users"=>["Jae Kwak", "Alan Willse", "Koichi Matsumura", "Maryanne Curran Opiekun", "Weiguang Yi", "George Preti", "Kunio Yamazaki", "Gary K. Beauchamp"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0003591.g003", "stats"=>{"downloads"=>1, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Endogenous_compound_ranked_by_their_importance_in_discriminating_MHC_types_across_diets_/588062", "title"=>"Endogenous compound ranked by their importance in discriminating MHC types across diets.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2008-10-31 02:14:22"}
  • {"files"=>["https://ndownloader.figshare.com/files/917786"], "description"=>"<p>The compounds are listed in the order of increasing retention time. The numbers in the right-hand columns of <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0003591#pone-0003591-t003\" target=\"_blank\">Table 3</a> are the p values and a zero means p≤0.0001. (T) = tentatively identified. Compounds likely to be of exogenous origin are printed in <b><i>bold-italic</i></b>-face type.</p>", "links"=>[], "tags"=>["chemistry/applied chemistry", "ecology/behavioral ecology", "evolutionary biology/animal behavior"], "article_id"=>588235, "categories"=>["Infectious Diseases", "Chemistry"], "users"=>["Jae Kwak", "Alan Willse", "Koichi Matsumura", "Maryanne Curran Opiekun", "Weiguang Yi", "George Preti", "Kunio Yamazaki", "Gary K. Beauchamp"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0003591.t003", "stats"=>{"downloads"=>1, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Compounds_identified_in_mouse_urine_and_their_statistical_significance_/588235", "title"=>"Compounds identified in mouse urine, and their statistical significance.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2008-10-31 02:17:15"}
  • {"files"=>["https://ndownloader.figshare.com/files/917745"], "description"=>"<p>Mice trained to discriminate MHC differences on Diet L generalized this response to the same differences in MHC genes on the different diet (Diet S).</p>*<p>Diet L = Laboratory Rodent diet.</p>†<p>Diet S = Synthetic diet.</p>‡<p>p<0.0001, binominal test.</p>a<p>The plus sign (+) refers to a choice that is correct or concordant with training whereas the minus sign (−) refers to a response that was incorrect or not concordant with training.</p>", "links"=>[], "tags"=>["urine", "odor", "choices"], "article_id"=>588198, "categories"=>["Infectious Diseases", "Chemistry"], "users"=>["Jae Kwak", "Alan Willse", "Koichi Matsumura", "Maryanne Curran Opiekun", "Weiguang Yi", "George Preti", "Kunio Yamazaki", "Gary K. Beauchamp"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0003591.t002", "stats"=>{"downloads"=>0, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Responses_to_urine_odor_choices_for_Behavior_Experiment_2_/588198", "title"=>"Responses to urine odor choices for Behavior Experiment 2.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2008-10-31 02:16:38"}
  • {"files"=>["https://ndownloader.figshare.com/files/453056", "https://ndownloader.figshare.com/files/453090"], "description"=>"<div><p>Individual mice have a unique odor, or odortype, that facilitates individual recognition. Odortypes, like other phenotypes, can be influenced by genetic and environmental variation. The genetic influence derives in part from genes of the major histocompatibility complex (MHC). A major environmental influence is diet, which could obscure the genetic contribution to odortype. Because odortype stability is a prerequisite for individual recognition under normal behavioral conditions, we investigated whether MHC-determined urinary odortypes of inbred mice can be identified in the face of large diet-induced variation. Mice trained to discriminate urines from panels of mice that differed both in diet and MHC type found the diet odor more salient in generalization trials. Nevertheless, when mice were trained to discriminate mice with only MHC differences (but on the same diet), they recognized the MHC difference when tested with urines from mice on a different diet. This indicates that MHC odor profiles remain despite large dietary variation. Chemical analyses of urinary volatile organic compounds (VOCs) extracted by solid phase microextraction (SPME) and analyzed by gas chromatography/mass spectrometry (GC/MS) are consistent with this inference. Although diet influenced VOC variation more than MHC, with algorithmic training (supervised classification) MHC types could be accurately discriminated across different diets. Thus, although there are clear diet effects on urinary volatile profiles, they do not obscure MHC effects.</p></div>", "links"=>[], "tags"=>["genetically-based", "olfactory", "signatures", "dietary"], "article_id"=>149259, "categories"=>["Cancer", "Chemistry"], "users"=>["Jae Kwak", "Alan Willse", "Koichi Matsumura", "Maryanne Curran Opiekun", "Weiguang Yi", "George Preti", "Kunio Yamazaki", "Gary K. Beauchamp"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0003591.s001", "https://dx.doi.org/10.1371/journal.pone.0003591.s002"], "stats"=>{"downloads"=>0, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Genetically_Based_Olfactory_Signatures_Persist_Despite_Dietary_Variation/149259", "title"=>"Genetically-Based Olfactory Signatures Persist Despite Dietary Variation", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2008-10-31 02:34:19"}
  • {"files"=>["https://ndownloader.figshare.com/files/917413"], "description"=>"<p>One representative chromatogram each from B6 mice fed Diet L, B6 mice fed Diet S, B6-H2<sup>K</sup> mice fed Diet L and B6-H2<sup>K</sup> mice fed Diet S is shown here. Prominent compound peaks include 2-acetyl-1-pyrroline (11.99 min), beta-farnesene (19.00 min), alpha-farnesene (20.63 min), and the mouse pheromones 2,3-dehydro-exo-brevicomin (13.62 min) and 2-sec-butyl-4,5-dihydrothiazole (14.93 min).</p>", "links"=>[], "tags"=>["ion", "chromatograms", "urinary", "volatiles", "extracted"], "article_id"=>587858, "categories"=>["Infectious Diseases", "Chemistry"], "users"=>["Jae Kwak", "Alan Willse", "Koichi Matsumura", "Maryanne Curran Opiekun", "Weiguang Yi", "George Preti", "Kunio Yamazaki", "Gary K. Beauchamp"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0003591.g001", "stats"=>{"downloads"=>2, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Typical_total_ion_chromatograms_from_the_urinary_volatiles_extracted_from_four_mouse_groups_/587858", "title"=>"Typical total ion chromatograms from the urinary volatiles extracted from four mouse groups.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2008-10-31 02:10:58"}
  • {"files"=>["https://ndownloader.figshare.com/files/917677"], "description"=>"<p>Each panel displays normalized intensity values (y-axis) for a single metabolite affected by MHC types. MHC type is given on the x-axis, and different diets are distinguished by color and plotting character (green square for Diet L; blue triangle for Diet S). A line connecting average responses for each MHC type is shown separately for Diet L (green) and Diet S (blue).</p>", "links"=>[], "tags"=>["intensities", "top-ranked", "compounds", "affected", "mhc"], "article_id"=>588133, "categories"=>["Infectious Diseases", "Chemistry"], "users"=>["Jae Kwak", "Alan Willse", "Koichi Matsumura", "Maryanne Curran Opiekun", "Weiguang Yi", "George Preti", "Kunio Yamazaki", "Gary K. Beauchamp"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0003591.g004", "stats"=>{"downloads"=>1, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Distributions_of_the_intensities_for_the_top_ranked_compounds_affected_by_MHC_types_/588133", "title"=>"Distributions of the intensities for the top-ranked compounds affected by MHC types.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2008-10-31 02:15:33"}
  • {"files"=>["https://ndownloader.figshare.com/files/917513"], "description"=>"<p>Each number represents a compound, indexed in <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0003591#pone-0003591-t003\" target=\"_blank\">Table 3</a>. Two separate test statistics are represented on horizontal and vertical axes. Horizontal and vertical dashed lines represent thresholds for statistical significance, so that the middle of central panel represents non-significance for both tests. Regarding the relative concentration of a certain compound, in the top panel, red color represents compounds where the concentration is higher in B6 than in B6-H2<sup>k</sup> and blue color represents compounds where the concentration is higher in B6-H2<sup>k</sup> than in B6 regardless of diet. In the bottom panel, orange color represents compounds where the concentration is higher in Diet L than in Diet S and green color represents compounds where the concentration is higher in Diet S than in Diet L regardless of MHC type. The pink color represents the single compound where the concentration is higher in Diet L under B6 MHC type, but is lower in Diet L under B6-H2<sup>k</sup> MHC type.</p>", "links"=>[], "tags"=>["t-statistics", "within-diet", "mhc", "compared", "diets", "within-mhc", "types"], "article_id"=>587954, "categories"=>["Infectious Diseases", "Chemistry"], "users"=>["Jae Kwak", "Alan Willse", "Koichi Matsumura", "Maryanne Curran Opiekun", "Weiguang Yi", "George Preti", "Kunio Yamazaki", "Gary K. Beauchamp"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0003591.g002", "stats"=>{"downloads"=>1, "page_views"=>9, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Comparison_of_t_statistics_for_within_diet_MHC_effects_compared_for_two_diets_top_and_within_MHC_Diet_effects_compared_for_two_MHC_types_bottom_/587954", "title"=>"Comparison of t-statistics for within-diet MHC effects compared for two diets (top), and within-MHC Diet effects compared for two MHC types (bottom).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2008-10-31 02:12:34"}

PMC Usage Stats | Further Information

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Relative Metric

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