Monitoring Bacterial Community of Human Gut Microbiota Reveals an Increase in Lactobacillus in Obese Patients and Methanogens in Anorexic Patients
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{"title"=>"Monitoring bacterial community of human gut microbiota reveals an increase in Lactobacillus in obese patients and Methanogens in anorexic patients", "type"=>"journal", "authors"=>[{"first_name"=>"Fabrice", "last_name"=>"Armougom", "scopus_author_id"=>"14218907900"}, {"first_name"=>"Mireille", "last_name"=>"Henry", "scopus_author_id"=>"7402290888"}, {"first_name"=>"Bernard", "last_name"=>"Vialettes", "scopus_author_id"=>"7102063571"}, {"first_name"=>"Denis", "last_name"=>"Raccah", "scopus_author_id"=>"7006623032"}, {"first_name"=>"Didier", "last_name"=>"Raoult", "scopus_author_id"=>"36040059800"}], "year"=>2009, "source"=>"PLoS ONE", "identifiers"=>{"issn"=>"19326203", "scopus"=>"2-s2.0-70349631208", "sgr"=>"70349631208", "pui"=>"355364865", "isbn"=>"1932-6203 (Electronic)\\r1932-6203 (Linking)", "pmid"=>"19774074", "doi"=>"10.1371/journal.pone.0007125"}, "id"=>"e48cea62-c0f7-3306-9b65-f5b2cdc8b4ed", "abstract"=>"BACKGROUND: Studies of the bacterial communities of the gut microbiota have revealed a shift in the ratio of Firmicutes and Bacteroidetes in obese patients. Determining the variations of microbial communities in feces may be beneficial for the identification of specific profiles in patients with abnormal weights. The roles of the archaeon Methanobrevibacter smithii and Lactobacillus species have not been described in these studies.\\n\\nMETHODS AND FINDINGS: We developed an efficient and robust real-time PCR tool that includes a plasmid-based internal control and allows for quantification of the bacterial divisions Bacteroidetes, Firmicutes, and Lactobacillus as well as the methanogen M. smithii. We applied this technique to the feces of 20 obese subjects, 9 patients with anorexia nervosa, and 20 normal-weight healthy controls. Our results confirmed a reduction in the Bacteroidetes community in obese patients (p<0.01). We found a significantly higher Lactobacillus species concentration in obese patients than in lean controls (p=0.0197) or anorexic patients (p=0.0332). The M. smithii concentration was much higher in anorexic patients than in the lean population (p=0.0171).\\n\\nCONCLUSIONS: Lactobacillus species are widely used as growth promoters in the farm industry and are now linked to obesity in humans. The study of the bacterial flora in anorexic patients revealed an increase in M. smithii. This increase might represent an adaptive use of nutrients in this population.", "link"=>"http://www.mendeley.com/research/monitoring-bacterial-community-human-gut-microbiota-reveals-increase-lactobacillus-obese-patients-me", "reader_count"=>422, "reader_count_by_academic_status"=>{"Unspecified"=>12, "Professor > Associate Professor"=>15, "Researcher"=>82, "Student > Doctoral Student"=>32, "Student > Ph. D. 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  • {"month"=>"3", "year"=>"2020", "pdf_views"=>"30", "xml_views"=>"1", "html_views"=>"69"}
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  • {"month"=>"5", "year"=>"2020", "pdf_views"=>"65", "xml_views"=>"1", "html_views"=>"67"}
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  • {"month"=>"8", "year"=>"2020", "pdf_views"=>"39", "xml_views"=>"0", "html_views"=>"65"}
  • {"month"=>"9", "year"=>"2020", "pdf_views"=>"51", "xml_views"=>"0", "html_views"=>"52"}

Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/882697"], "description"=>"<p>SD indicates Standard Deviation, means are the Cycle Threshold values (Ct), and CV indicates the Coefficient of Variation. Each assay extract used independent DNA extracts from a given fecal sample. The Ct mean of an assay extract is the result of five replicate real-time PCR measures.</p>", "links"=>[], "tags"=>["microbiology/environmental microbiology", "molecular biology/bioinformatics", "gastroenterology and hepatology/gastrointestinal infections"], "article_id"=>553154, "categories"=>["Cancer", "Microbiology", "Molecular Biology"], "users"=>["Fabrice Armougom", "Mireille Henry", "Bernard Vialettes", "Denis Raccah", "Didier Raoult"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0007125.t003", "stats"=>{"downloads"=>4, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Reproducibility_Assay_/553154", "title"=>"Reproducibility Assay.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2009-09-23 00:52:34"}
  • {"files"=>["https://ndownloader.figshare.com/files/882575"], "description"=>"<p>The number of individuals having a high <i>Lactobacillus</i> concentration was 1 out of 20, 8 out of 20, and 0 out of 9 for the lean, obese, and anorexic groups, respectively.</p>", "links"=>[], "tags"=>["microbiology/environmental microbiology", "molecular biology/bioinformatics", "gastroenterology and hepatology/gastrointestinal infections"], "article_id"=>553030, "categories"=>["Cancer", "Microbiology", "Molecular Biology"], "users"=>["Fabrice Armougom", "Mireille Henry", "Bernard Vialettes", "Denis Raccah", "Didier Raoult"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0007125.g004", "stats"=>{"downloads"=>3, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Distribution_of_high_Lactobacillus_concentrations_/553030", "title"=>"Distribution of high <i>Lactobacillus</i> concentrations.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2009-09-23 00:50:30"}
  • {"files"=>["https://ndownloader.figshare.com/files/882479"], "description"=>"<p>Box and whisker: 10–90 percentiles. Outliers are plotted as a black bubble, means are plotted as a plus, and medians are the black lines in the boxes. P value <0.05 is represented as * and P value <0.01 is represented as ** on the graph.</p>", "links"=>[], "tags"=>["microbiology/environmental microbiology", "molecular biology/bioinformatics", "gastroenterology and hepatology/gastrointestinal infections"], "article_id"=>552934, "categories"=>["Cancer", "Microbiology", "Molecular Biology"], "users"=>["Fabrice Armougom", "Mireille Henry", "Bernard Vialettes", "Denis Raccah", "Didier Raoult"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0007125.g003", "stats"=>{"downloads"=>1, "page_views"=>2, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_Bacteroidetes_quantification_/552934", "title"=>"The <i>Bacteroidetes</i> quantification.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2009-09-23 00:48:54"}
  • {"files"=>["https://ndownloader.figshare.com/files/437730"], "description"=>"<div><h3>Background</h3><p>Studies of the bacterial communities of the gut microbiota have revealed a shift in the ratio of <em>Firmicutes</em> and <em>Bacteroidetes</em> in obese patients. Determining the variations of microbial communities in feces may be beneficial for the identification of specific profiles in patients with abnormal weights. The roles of the archaeon <em>Methanobrevibacter smithii</em> and <em>Lactobacillus</em> species have not been described in these studies.</p><h3>Methods and Findings</h3><p>We developed an efficient and robust real-time PCR tool that includes a plasmid-based internal control and allows for quantification of the bacterial divisions <em>Bacteroidetes</em>, <em>Firmicutes</em>, and <em>Lactobacillus</em> as well as the methanogen <em>M. smithii</em>. We applied this technique to the feces of 20 obese subjects, 9 patients with anorexia nervosa, and 20 normal-weight healthy controls. Our results confirmed a reduction in the <em>Bacteroidetes</em> community in obese patients (p<0.01). We found a significantly higher <em>Lactobacillus</em> species concentration in obese patients than in lean controls (p = 0.0197) or anorexic patients (p = 0.0332). The <em>M. smithii</em> concentration was much higher in anorexic patients than in the lean population (p = 0.0171).</p><h3>Conclusions</h3><p><em>Lactobacillus</em> species are widely used as growth promoters in the farm industry and are now linked to obesity in humans. The study of the bacterial flora in anorexic patients revealed an increase in <em>M. smithii</em>. This increase might represent an adaptive use of nutrients in this population.</p></div>", "links"=>[], "tags"=>["monitoring", "bacterial", "microbiota", "reveals", "obese", "patients", "anorexic"], "article_id"=>146282, "categories"=>["Cancer", "Microbiology", "Molecular Biology"], "users"=>["Fabrice Armougom", "Mireille Henry", "Bernard Vialettes", "Denis Raccah", "Didier Raoult"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0007125", "stats"=>{"downloads"=>15, "page_views"=>22, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Monitoring_Bacterial_Community_of_Human_Gut_Microbiota_Reveals_an_Increase_in_Lactobacillus_in_Obese_Patients_and_Methanogens_in_Anorexic_Patients/146282", "title"=>"Monitoring Bacterial Community of Human Gut Microbiota Reveals an Increase in <em>Lactobacillus</em> in Obese Patients and <em>Methanogens</em> in Anorexic Patients", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2009-09-23 01:44:42"}
  • {"files"=>["https://ndownloader.figshare.com/files/882664"], "description"=>"<p>FP indicates the forward primer, and RP indicates the reverse primer.</p>", "links"=>[], "tags"=>["Real-time", "pcr"], "article_id"=>553122, "categories"=>["Cancer", "Microbiology", "Molecular Biology"], "users"=>["Fabrice Armougom", "Mireille Henry", "Bernard Vialettes", "Denis Raccah", "Didier Raoult"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0007125.t001", "stats"=>{"downloads"=>11, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Bacteroidetes_and_Firmicutes_Real_Time_PCR_System_/553122", "title"=>"<i>Bacteroidetes</i> and <i>Firmicutes</i> Real-Time PCR System.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2009-09-23 00:52:02"}
  • {"files"=>["https://ndownloader.figshare.com/files/882323"], "description"=>"<p>Scores in parentheses indicate the number of sequences matching the system out of the total sequence number of a given genus.</p>", "links"=>[], "tags"=>["genus", "taxonomic"], "article_id"=>552781, "categories"=>["Cancer", "Microbiology", "Molecular Biology"], "users"=>["Fabrice Armougom", "Mireille Henry", "Bernard Vialettes", "Denis Raccah", "Didier Raoult"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0007125.g001", "stats"=>{"downloads"=>1, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Firmicutes_system_sensitivity_at_genus_taxonomic_level_/552781", "title"=>"<i>Firmicutes</i> system sensitivity at genus taxonomic level.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2009-09-23 00:46:21"}
  • {"files"=>["https://ndownloader.figshare.com/files/882722"], "description"=>"<p>Scores are bacteria/archaea copies per g of feces. Ano indicates anorexic individuals and Ob indicates obese individuals. Lean indicates normal weight individuals. The diabetic patients are mentioned by an asterisk (*).</p>", "links"=>[], "tags"=>["microbiology/environmental microbiology", "molecular biology/bioinformatics", "gastroenterology and hepatology/gastrointestinal infections"], "article_id"=>553176, "categories"=>["Cancer", "Microbiology", "Molecular Biology"], "users"=>["Fabrice Armougom", "Mireille Henry", "Bernard Vialettes", "Denis Raccah", "Didier Raoult"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0007125.t002", "stats"=>{"downloads"=>1, "page_views"=>19, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Bacteroidetes_Firmicutes_Lactobacillus_and_M_smithii_Quantifications_/553176", "title"=>"<i>Bacteroidetes</i>, <i>Firmicutes</i>, <i>Lactobacillus</i> and <i>M. smithii</i> Quantifications.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2009-09-23 00:52:56"}
  • {"files"=>["https://ndownloader.figshare.com/files/882617"], "description"=>"<p>Values are means±SD. P value <0.05 is represented as * and P value > 0.05 is indicated by “ns” for not significant.</p>", "links"=>[], "tags"=>["archaeon"], "article_id"=>553071, "categories"=>["Cancer", "Microbiology", "Molecular Biology"], "users"=>["Fabrice Armougom", "Mireille Henry", "Bernard Vialettes", "Denis Raccah", "Didier Raoult"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0007125.g005", "stats"=>{"downloads"=>1, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Quantification_of_the_archaeon_M_smithii_species_/553071", "title"=>"Quantification of the archaeon <i>M. smithii</i> species.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2009-09-23 00:51:11"}
  • {"files"=>["https://ndownloader.figshare.com/files/882407"], "description"=>"<p>Scores in parentheses indicate the number of sequences matching the system out of the total sequence number of a given genus.</p>", "links"=>[], "tags"=>["genus", "taxonomic"], "article_id"=>552863, "categories"=>["Cancer", "Microbiology", "Molecular Biology"], "users"=>["Fabrice Armougom", "Mireille Henry", "Bernard Vialettes", "Denis Raccah", "Didier Raoult"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0007125.g002", "stats"=>{"downloads"=>1, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Bacteroidetes_system_sensitivity_at_genus_taxonomic_level_/552863", "title"=>"<i>Bacteroidetes</i> system sensitivity at genus taxonomic level.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2009-09-23 00:47:43"}

PMC Usage Stats | Further Information

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Relative Metric

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