Ethnic and Geographic Differentiation of Helicobacter pylori within Iran
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Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/858747"], "description"=>"<p>Significant FSTs have been shown in italics (Significance Level = 0.0500).</p>", "links"=>[], "tags"=>["pair-wise", "iranian", "populations"], "article_id"=>529193, "categories"=>["Genetics", "Microbiology"], "users"=>["Saeid Latifi-Navid", "Seyed Ali Ghorashi", "Farideh Siavoshi", "Bodo Linz", "Sadegh Massarrat", "Tanya Khegay", "Ali-Hatef Salmanian", "Ali Akbar Shayesteh", "Mohsen Masoodi", "Koroush Ghanadi", "Azita Ganji", "Sebastian Suerbaum", "Mark Achtman", "Reza Malekzadeh", "Daniel Falush"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0009645.t002", "stats"=>{"downloads"=>3, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Mean_pair_wise_F_ST_values_between_Iranian_H_pylori_populations_and_others_with_HpEurope_signatures_/529193", "title"=>"Mean pair-wise <i>F<sub>ST</sub></i> values between Iranian <i>H. pylori</i> populations and others with <i>HpEurope</i> signatures.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2010-03-22 02:33:13"}
  • {"files"=>["https://ndownloader.figshare.com/files/426253", "https://ndownloader.figshare.com/files/426305"], "description"=>"<div><p>The bacterium <em>Helicobacter pylori</em> colonizes the human stomach, with individual infections persisting for decades. The spread of the bacterium has been shown to reflect both ancient and recent human migrations. We have sequenced housekeeping genes from <em>H. pylori</em> isolated from 147 Iranians with well-characterized geographical and ethnic origins sampled throughout Iran and compared them with sequences from strains from other locations. <em>H. pylori</em> from Iran are similar to others isolated from Western Eurasia and can be placed in the previously described HpEurope population. Despite the location of Iran at the crossroads of Eurasia, we found no evidence that the region been a major source of ancestry for strains across the continent. On a smaller scale, we found genetic affinities between the <em>H. pylori</em> isolated from particular Iranian populations and strains from Turks, Uzbeks, Palestinians and Israelis, reflecting documented historical contacts over the past two thousand years.</p></div>", "links"=>[], "tags"=>["geographic", "differentiation", "iran"], "article_id"=>144149, "categories"=>["Genetics", "Microbiology"], "users"=>["Saeid Latifi-Navid", "Seyed Ali Ghorashi", "Farideh Siavoshi", "Bodo Linz", "Sadegh Massarrat", "Tanya Khegay", "Ali-Hatef Salmanian", "Ali Akbar Shayesteh", "Mohsen Masoodi", "Koroush Ghanadi", "Azita Ganji", "Sebastian Suerbaum", "Mark Achtman", "Reza Malekzadeh", "Daniel Falush"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0009645.s001", "https://dx.doi.org/10.1371/journal.pone.0009645.s002"], "stats"=>{"downloads"=>0, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Ethnic_and_Geographic_Differentiation_of_Helicobacter_pylori_within_Iran/144149", "title"=>"Ethnic and Geographic Differentiation of <em>Helicobacter pylori</em> within Iran", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2010-03-22 01:09:09"}
  • {"files"=>["https://ndownloader.figshare.com/files/858238"], "description"=>"<p>The proportion of AE1 nucleotides is indicated for each population. The proportion of AE2 ancestry is 1.0-the proportion of AE1 ancestry. The sample sizes for the non-Iranian samples were UK 7, Finland 10, Estonia 8, Russia 159, Kyrgystan 9, Turkey 19, Spain 71, Italy 7, Palestine 11, Israel 58, Germany 22, Uzbekistan (Uzbek) 55, Uzbekistan (Tajik) 17.</p>", "links"=>[], "tags"=>["labelled", "geographical", "locations", "populations"], "article_id"=>528678, "categories"=>["Genetics", "Microbiology"], "users"=>["Saeid Latifi-Navid", "Seyed Ali Ghorashi", "Farideh Siavoshi", "Bodo Linz", "Sadegh Massarrat", "Tanya Khegay", "Ali-Hatef Salmanian", "Ali Akbar Shayesteh", "Mohsen Masoodi", "Koroush Ghanadi", "Azita Ganji", "Sebastian Suerbaum", "Mark Achtman", "Reza Malekzadeh", "Daniel Falush"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0009645.g001", "stats"=>{"downloads"=>1, "page_views"=>9, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_A_detailed_map_with_the_labelled_geographical_locations_that_H_pylori_populations_were_isolated_/528678", "title"=>"A detailed map with the labelled geographical locations that <i>H. pylori</i> populations were isolated.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2010-03-22 02:24:38"}
  • {"files"=>["https://ndownloader.figshare.com/files/858474"], "description"=>"<p>Neighbor-joining tree based on pairwise <i>F<sub>ST</sub></i> values generated from hpEurope population.</p>", "links"=>[], "tags"=>["pairwise", "generated", "hpeurope"], "article_id"=>528910, "categories"=>["Genetics", "Microbiology"], "users"=>["Saeid Latifi-Navid", "Seyed Ali Ghorashi", "Farideh Siavoshi", "Bodo Linz", "Sadegh Massarrat", "Tanya Khegay", "Ali-Hatef Salmanian", "Ali Akbar Shayesteh", "Mohsen Masoodi", "Koroush Ghanadi", "Azita Ganji", "Sebastian Suerbaum", "Mark Achtman", "Reza Malekzadeh", "Daniel Falush"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0009645.g003", "stats"=>{"downloads"=>0, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Neighbor_joining_tree_based_on_pairwise_F_ST_values_generated_from_hpEurope_population_/528910", "title"=>"Neighbor-joining tree based on pairwise <i>F<sub>ST</sub></i> values generated from hpEurope population.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2010-03-22 02:28:30"}
  • {"files"=>["https://ndownloader.figshare.com/files/858710"], "description"=>"<p>Description of Iranian strains.</p>", "links"=>[], "tags"=>["iranian"], "article_id"=>529154, "categories"=>["Genetics", "Microbiology"], "users"=>["Saeid Latifi-Navid", "Seyed Ali Ghorashi", "Farideh Siavoshi", "Bodo Linz", "Sadegh Massarrat", "Tanya Khegay", "Ali-Hatef Salmanian", "Ali Akbar Shayesteh", "Mohsen Masoodi", "Koroush Ghanadi", "Azita Ganji", "Sebastian Suerbaum", "Mark Achtman", "Reza Malekzadeh", "Daniel Falush"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0009645.t001", "stats"=>{"downloads"=>0, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Description_of_Iranian_strains_/529154", "title"=>"Description of Iranian strains.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2010-03-22 02:32:34"}
  • {"files"=>["https://ndownloader.figshare.com/files/858621"], "description"=>"<p>Detailed map highlighting historical events postulated to be responsible for similarities of Iranian isolates with those of neighboring countries.</p>", "links"=>[], "tags"=>["highlighting", "events", "postulated", "similarities", "iranian", "isolates"], "article_id"=>529070, "categories"=>["Genetics", "Microbiology"], "users"=>["Saeid Latifi-Navid", "Seyed Ali Ghorashi", "Farideh Siavoshi", "Bodo Linz", "Sadegh Massarrat", "Tanya Khegay", "Ali-Hatef Salmanian", "Ali Akbar Shayesteh", "Mohsen Masoodi", "Koroush Ghanadi", "Azita Ganji", "Sebastian Suerbaum", "Mark Achtman", "Reza Malekzadeh", "Daniel Falush"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0009645.g004", "stats"=>{"downloads"=>0, "page_views"=>16, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Detailed_map_highlighting_historical_events_postulated_to_be_responsible_for_similarities_of_Iranian_isolates_with_those_of_neighboring_countries_/529070", "title"=>"Detailed map highlighting historical events postulated to be responsible for similarities of Iranian isolates with those of neighboring countries.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2010-03-22 02:31:10"}
  • {"files"=>["https://ndownloader.figshare.com/files/858368"], "description"=>"<p>The differentiated bacterial populations were recognized and called hpAfrica2, hpAfrica1, hspNEAfrica, hpEurope (hpEurope1 and hpEurope2), hpAsia2, hpEAsia, hpAmerind and hpMaori. The Iranian strains shared ancestral origins with the European counterparts. Each lineage is supported by a higher bootstrap value given at the corresponding branch. The strains were colour-coded according to the origins they were isolated.</p>", "links"=>[], "tags"=>["phylogenetic", "68", "isolates", "concatenated", "housekeeping"], "article_id"=>528806, "categories"=>["Genetics", "Microbiology"], "users"=>["Saeid Latifi-Navid", "Seyed Ali Ghorashi", "Farideh Siavoshi", "Bodo Linz", "Sadegh Massarrat", "Tanya Khegay", "Ali-Hatef Salmanian", "Ali Akbar Shayesteh", "Mohsen Masoodi", "Koroush Ghanadi", "Azita Ganji", "Sebastian Suerbaum", "Mark Achtman", "Reza Malekzadeh", "Daniel Falush"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0009645.g002", "stats"=>{"downloads"=>1, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Neighbor_joining_phylogenetic_analysis_of_68_worldwide_H_pylori_isolates_using_seven_concatenated_housekeeping_gene_sequences_/528806", "title"=>"Neighbor-joining phylogenetic analysis of 68 worldwide <i>H. pylori</i> isolates using seven concatenated housekeeping gene sequences.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2010-03-22 02:26:46"}

PMC Usage Stats | Further Information

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Relative Metric

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