Hydrogenase-3 Contributes to Anaerobic Acid Resistance of Escherichia coli
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{"title"=>"Hydrogenase-3 contributes to anaerobic acid resistance of escherichia coli", "type"=>"journal", "authors"=>[{"first_name"=>"Ken", "last_name"=>"Noguchi", "scopus_author_id"=>"35748864600"}, {"first_name"=>"Daniel P.", "last_name"=>"Riggins", "scopus_author_id"=>"36638304400"}, {"first_name"=>"Khalid C.", "last_name"=>"Eldahan", "scopus_author_id"=>"57194493630"}, {"first_name"=>"Ryan D.", "last_name"=>"Kitko", "scopus_author_id"=>"35237001600"}, {"first_name"=>"Joan L.", "last_name"=>"Slonczewski", "scopus_author_id"=>"7005244208"}], "year"=>2010, "source"=>"PLoS ONE", "identifiers"=>{"scopus"=>"2-s2.0-77956330310", "doi"=>"10.1371/journal.pone.0010132", "sgr"=>"77956330310", "isbn"=>"1932-6203 (Electronic)\\n1932-6203 (Linking)", "pmid"=>"20405029", "issn"=>"19326203", "pui"=>"359482079"}, "id"=>"77515f98-d3f1-36c1-9731-4cd3f290cacf", "abstract"=>"Hydrogen production by fermenting bacteria such as Escherichia coli offers a potential source of hydrogen biofuel. Because H(2) production involves consumption of 2H(+), hydrogenase expression is likely to involve pH response and regulation. Hydrogenase consumption of protons in E. coli has been implicated in acid resistance, the ability to survive exposure to acid levels (pH 2-2.5) that are three pH units lower than the pH limit of growth (pH 5-6). Enhanced survival in acid enables a larger infective inoculum to pass through the stomach and colonize the intestine. Most acid resistance mechanisms have been defined using aerobic cultures, but the use of anaerobic cultures will reveal novel acid resistance mechanisms.", "link"=>"http://www.mendeley.com/research/hydrogenase3-contributes-anaerobic-acid-resistance-escherichia-coli", "reader_count"=>44, "reader_count_by_academic_status"=>{"Professor > Associate Professor"=>3, "Researcher"=>12, "Student > Doctoral Student"=>7, "Student > Ph. D. Student"=>13, "Student > Master"=>6, "Student > Bachelor"=>3}, "reader_count_by_user_role"=>{"Professor > Associate Professor"=>3, "Researcher"=>12, "Student > Doctoral Student"=>7, "Student > Ph. D. Student"=>13, "Student > Master"=>6, "Student > Bachelor"=>3}, "reader_count_by_subject_area"=>{"Engineering"=>4, "Environmental Science"=>1, "Biochemistry, Genetics and Molecular Biology"=>3, "Agricultural and Biological Sciences"=>28, "Chemistry"=>5, "Immunology and Microbiology"=>3}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>4}, "Chemistry"=>{"Chemistry"=>5}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>3}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>28}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>3}, "Environmental Science"=>{"Environmental Science"=>1}}, "reader_count_by_country"=>{"Czech Republic"=>1, "Ireland"=>1, "Finland"=>1}, "group_count"=>2}

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/854184"], "description"=>"<p>Anaerobic cultures were grown to log phase at pH 5.5 (black bars), 6 (hatched bars), and 6.5 (white bars) and assayed for H<sub>2</sub> production as described in the <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0010132#s4\" target=\"_blank\">Materials and Methods</a>. H<sub>2</sub> production rate was calculated as stated in the <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0010132#s4\" target=\"_blank\">Materials and Methods</a>. Error bars represent SEM, n = 3; those that were too small to see clearly were omitted. The experiment was conducted twice.</p>", "links"=>[], "tags"=>["ph"], "article_id"=>524640, "categories"=>["Microbiology"], "users"=>["Ken Noguchi", "Daniel P. Riggins", "Khalid C. Eldahan", "Ryan D. Kitko", "Joan L. Slonczewski"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0010132.g002", "stats"=>{"downloads"=>0, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Effect_of_pH_on_the_H_2_production_rate_of_W3110_916_hybC_and_hycE_/524640", "title"=>"Effect of pH on the H<sub>2</sub> production rate of W3110, Δ<i>hybC,</i> and Δ<i>hycE</i>.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 01:49:42"}
  • {"files"=>["https://ndownloader.figshare.com/files/854264"], "description"=>"<p>The lines represent traces of H<sub>2</sub> concentration as a function of time. Before time 0 the cultures were sparged with 20% H<sub>2</sub>/80% N<sub>2</sub> in order to saturate the culture with H<sub>2</sub>. Anaerobic cultures of W3110 (<b>A</b>) and Δ<i>hycE</i> (<b>B</b>) were grown to log phase at pH 5.5, pH 7, and pH 8 and assayed for H<sub>2</sub> consumption as stated in the <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0010132#s4\" target=\"_blank\">Materials and Methods</a>. A sample of LBK saturated with H<sub>2</sub> was assayed as a control to assess residual H<sub>2</sub> loss. Lines are representative samples of n = 3.</p>", "links"=>[], "tags"=>["ph", "w3110"], "article_id"=>524720, "categories"=>["Microbiology"], "users"=>["Ken Noguchi", "Daniel P. Riggins", "Khalid C. Eldahan", "Ryan D. Kitko", "Joan L. Slonczewski"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0010132.g004", "stats"=>{"downloads"=>1, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Effect_of_pH_on_the_H_2_consumption_by_W3110_and_916_hycE_/524720", "title"=>"Effect of pH on the H<sub>2</sub> consumption by W3110 and Δ<i>hycE</i>.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 01:50:16"}
  • {"files"=>["https://ndownloader.figshare.com/files/854347"], "description"=>"<p>Anaerobic cultures were grown to log phase under anaerobic conditions at pH 5.5 (black bars), 7 (hatched bars), and 8 (white bars) and assayed for H<sub>2</sub> consumption as described in the <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0010132#s4\" target=\"_blank\">Materials and Methods</a>. A negative value for H<sub>2</sub> consumption means H<sub>2</sub> is produced. H<sub>2</sub> consumption rate was calculated as stated in the <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0010132#s4\" target=\"_blank\">Materials and Methods</a>. Error bars represent SEM, n = 3. The experiment was conducted twice.</p>", "links"=>[], "tags"=>["ph", "w3110"], "article_id"=>524803, "categories"=>["Microbiology"], "users"=>["Ken Noguchi", "Daniel P. Riggins", "Khalid C. Eldahan", "Ryan D. Kitko", "Joan L. Slonczewski"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0010132.g005", "stats"=>{"downloads"=>1, "page_views"=>12, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Effect_of_pH_on_the_H_2_consumption_rate_of_W3110_and_916_hycE_/524803", "title"=>"Effect of pH on the H<sub>2</sub> consumption rate of W3110 and Δ<i>hycE</i>.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 01:50:47"}
  • {"files"=>["https://ndownloader.figshare.com/files/854407"], "description"=>"<p>The white bars represent cultures grown with aeration to stationary phase in LBK buffered at pH 5 that were diluted 200-fold into LBK pH 2 and exposed for 2 h with aeration at 37°C. The hatched and black bars represent anaerobic cultures grown to stationary phase in LBK buffered at pH 5.5 that were diluted 200-fold into LBK pH 2.5 (hatched) or pH 2 (black) and exposed for 2 h without aeration at 37°C. Aerobic and anaerobic cultures were maintained as stated in the <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0010132#s4\" target=\"_blank\">Materials and Methods</a>. Error bars represent SEM, n = 5 or 6.</p>", "links"=>[], "tags"=>["aeration"], "article_id"=>524868, "categories"=>["Microbiology"], "users"=>["Ken Noguchi", "Daniel P. Riggins", "Khalid C. Eldahan", "Ryan D. Kitko", "Joan L. Slonczewski"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0010132.g006", "stats"=>{"downloads"=>0, "page_views"=>9, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Effect_of_aeration_on_the_extreme_acid_survival_of_W3110_hybC_hycE_and_hypF_/524868", "title"=>"Effect of aeration on the extreme acid survival of W3110, Δ<i>hybC</i>, Δ<i>hycE</i>, and Δ<i>hypF</i>.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 01:51:10"}
  • {"files"=>["https://ndownloader.figshare.com/files/854229"], "description"=>"<p>RNA was isolated from anaerobic cultures grown to log phase at pH 5.5, 6, 6.5, and 7. Real-Time PCR was used to measure the mRNA levels of <i>hycE</i>, the large subunit of Hyd-3. Expression levels were normalized to the pH 7 control. Error bars represent SEM, n = 3 (RNA from independent cultures). The experiment was conducted twice.</p>", "links"=>[], "tags"=>["microbiology", "microbiology/microbial growth and development", "microbiology/microbial physiology and metabolism"], "article_id"=>524679, "categories"=>["Microbiology"], "users"=>["Ken Noguchi", "Daniel P. Riggins", "Khalid C. Eldahan", "Ryan D. Kitko", "Joan L. Slonczewski"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0010132.g003", "stats"=>{"downloads"=>0, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_hycE_gene_expression_in_W3110_/524679", "title"=>"<i>hycE</i> gene expression in W3110.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 01:49:58"}
  • {"files"=>["https://ndownloader.figshare.com/files/854503"], "description"=>"<p><i>E. coli</i> K-12 strains used in this study.</p>", "links"=>[], "tags"=>["k-12", "strains"], "article_id"=>524964, "categories"=>["Microbiology"], "users"=>["Ken Noguchi", "Daniel P. Riggins", "Khalid C. Eldahan", "Ryan D. Kitko", "Joan L. Slonczewski"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0010132.t001", "stats"=>{"downloads"=>7, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_E_coli_K_12_strains_used_in_this_study_/524964", "title"=>"<i>E. coli</i> K-12 strains used in this study.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-21 01:51:41"}
  • {"files"=>["https://ndownloader.figshare.com/files/854121"], "description"=>"<p>The lines represent traces of H<sub>2</sub> concentration as a function of time. Before time 0, the cultures were sparged with 100% N<sub>2</sub> in order to eliminate any residual H<sub>2</sub> in the culture. Anaerobic cultures of W3110 (<b>A</b>), Δ<i>hybC</i> (<b>B</b>), and Δ<i>hycE</i> (<b>C</b>) were grown to log phase at pH 5.5, pH 6, and pH 6.5 and assayed for H<sub>2</sub> production as stated in the <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0010132#s4\" target=\"_blank\">Materials and Methods</a>. Lines are representative samples of n = 3.</p>", "links"=>[], "tags"=>["ph"], "article_id"=>524573, "categories"=>["Microbiology"], "users"=>["Ken Noguchi", "Daniel P. Riggins", "Khalid C. Eldahan", "Ryan D. Kitko", "Joan L. Slonczewski"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0010132.g001", "stats"=>{"downloads"=>1, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Effect_of_pH_on_the_H_2_production_by_W3110_916_hybC_and_hycE_/524573", "title"=>"Effect of pH on the H<sub>2</sub> production by W3110, Δ<i>hybC</i>, and Δ<i>hycE</i>.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 01:49:16"}

PMC Usage Stats | Further Information

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