The Peopling of Europe from the Mitochondrial Haplogroup U5 Perspective
Publication Date
April 21, 2010
Journal
PLOS ONE
Authors
Boris Malyarchuk, Miroslava Derenko, Tomasz Grzybowski, Maria Perkova, et al
Volume
5
Issue
4
Pages
e10285
DOI
https://dx.plos.org/10.1371/journal.pone.0010285
Publisher URL
http://journals.plos.org/plosone/article?id=10.1371%2Fjournal.pone.0010285
PubMed
http://www.ncbi.nlm.nih.gov/pubmed/20422015
PubMed Central
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2858207
Europe PMC
http://europepmc.org/abstract/MED/20422015
Web of Science
000276952500024
Scopus
77956320703
Mendeley
http://www.mendeley.com/research/peopling-europe-mitochondrial-haplogroup-u5-perspective
Events
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Mendeley | Further Information

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CrossRef

Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/852965"], "description"=>"a<p>Mutation rate is one mutation per every 3624 years <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0010285#pone.0010285-Soares1\" target=\"_blank\">[3]</a>;</p>b<p>Mutation rate is one mutation per every 7884 years <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0010285#pone.0010285-Soares1\" target=\"_blank\">[3]</a>.</p>", "links"=>[], "tags"=>["estimates", "hg", "u5", "subclusters", "calculated", "mutation"], "article_id"=>523416, "categories"=>["Evolutionary Biology", "Molecular Biology", "Genetics"], "users"=>["Boris Malyarchuk", "Miroslava Derenko", "Tomasz Grzybowski", "Maria Perkova", "Urszula Rogalla", "Tomas Vanecek", "Iosif Tsybovsky"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0010285.t001", "stats"=>{"downloads"=>2, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Age_estimates_of_hg_U5_subclusters_calculated_using_different_mutation_rates_/523416", "title"=>"Age estimates of hg U5 subclusters calculated using different mutation rates.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2010-04-21 00:56:56"}
  • {"files"=>["https://ndownloader.figshare.com/files/424499", "https://ndownloader.figshare.com/files/424511", "https://ndownloader.figshare.com/files/424529", "https://ndownloader.figshare.com/files/424567", "https://ndownloader.figshare.com/files/424626", "https://ndownloader.figshare.com/files/424689"], "description"=>"<div><p>It is generally accepted that the most ancient European mitochondrial haplogroup, U5, has evolved essentially in Europe. To resolve the phylogeny of this haplogroup, we completely sequenced 113 mitochondrial genomes (79 U5a and 34 U5b) of central and eastern Europeans (Czechs, Slovaks, Poles, Russians and Belorussians), and reconstructed a detailed phylogenetic tree, that incorporates previously published data. Molecular dating suggests that the coalescence time estimate for the U5 is ∼25–30 thousand years (ky), and ∼16–20 and ∼20–24 ky for its subhaplogroups U5a and U5b, respectively. Phylogeographic analysis reveals that expansions of U5 subclusters started earlier in central and southern Europe, than in eastern Europe. In addition, during the Last Glacial Maximum central Europe (probably, the Carpathian Basin) apparently represented the area of intermingling between human flows from refugial zones in the Balkans, the Mediterranean coastline and the Pyrenees. Age estimations amounting for many U5 subclusters in eastern Europeans to ∼15 ky ago and less are consistent with the view that during the Ice Age eastern Europe was an inhospitable place for modern humans.</p></div>", "links"=>[], "tags"=>["peopling", "europe", "mitochondrial", "haplogroup", "u5"], "article_id"=>143805, "categories"=>["Evolutionary Biology", "Molecular Biology", "Genetics"], "users"=>["Boris Malyarchuk", "Miroslava Derenko", "Tomasz Grzybowski", "Maria Perkova", "Urszula Rogalla", "Tomas Vanecek", "Iosif Tsybovsky"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0010285.s001", "https://dx.doi.org/10.1371/journal.pone.0010285.s002", "https://dx.doi.org/10.1371/journal.pone.0010285.s003", "https://dx.doi.org/10.1371/journal.pone.0010285.s004", "https://dx.doi.org/10.1371/journal.pone.0010285.s005", "https://dx.doi.org/10.1371/journal.pone.0010285.s006"], "stats"=>{"downloads"=>42, "page_views"=>63, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/The_Peopling_of_Europe_from_the_Mitochondrial_Haplogroup_U5_Perspective/143805", "title"=>"The Peopling of Europe from the Mitochondrial Haplogroup U5 Perspective", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2010-04-21 01:03:25"}
  • {"files"=>["https://ndownloader.figshare.com/files/852869"], "description"=>"<p>This schematic tree is based on two phylogenetic trees (for U5a and U5b) presented in <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0010285#pone.0010285.s001\" target=\"_blank\">Figures S1</a> and <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0010285#pone.0010285.s002\" target=\"_blank\">S2</a>, respectively. Nomenclature of hg U5 subclusters was applied in accordance with the classification described in the <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0010285#pone.0010285.s003\" target=\"_blank\">Table S1</a>. Some unnamed tips are singular haplotypes (<i>e.g.</i> U5a1*) aggregated for the purposes of illustration. Time estimates (in ky) shown for mtDNA subclusters are based on the complete mitochondrial genome clock <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0010285#pone.0010285-Soares1\" target=\"_blank\">[3]</a>. The size of each circle is proportional to the number of individuals sharing the corresponding haplotype, with the smallest size corresponding to one individual. Geographical origins are indicated by different colors: eastern European – in blue, central European – in yellow, Mediterranean and western European – in fuchsia, and others (<i>i.e.</i> of unknown population origin) – in white. More detailed information on the origin of population samples can be found in <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0010285#pone.0010285.s001\" target=\"_blank\">Figures S1</a> and <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0010285#pone.0010285.s002\" target=\"_blank\">S2</a>.</p>", "links"=>[], "tags"=>["mtdna", "phylogenetic", "haplogroup"], "article_id"=>523317, "categories"=>["Evolutionary Biology", "Molecular Biology", "Genetics"], "users"=>["Boris Malyarchuk", "Miroslava Derenko", "Tomasz Grzybowski", "Maria Perkova", "Urszula Rogalla", "Tomas Vanecek", "Iosif Tsybovsky"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0010285.g001", "stats"=>{"downloads"=>1, "page_views"=>14, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Complete_mtDNA_phylogenetic_tree_of_haplogroup_U5_/523317", "title"=>"Complete mtDNA phylogenetic tree of haplogroup U5.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2010-04-21 00:55:17"}

PMC Usage Stats | Further Information

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Relative Metric

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