Ecology and Biogeography of Free-Living Nematodes Associated with Chemosynthetic Environments in the Deep Sea: A Review
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{"title"=>"Ecology and biogeography of free-living nematodes associated with chemosynthetic environments in the deep sea: A review", "type"=>"journal", "authors"=>[{"first_name"=>"Ann", "last_name"=>"Vanreusel", "scopus_author_id"=>"6603031506"}, {"first_name"=>"Annelies", "last_name"=>"de Groote", "scopus_author_id"=>"56829292800"}, {"first_name"=>"Sabine", "last_name"=>"Gollner", "scopus_author_id"=>"12141323600"}, {"first_name"=>"Monika", "last_name"=>"Bright", "scopus_author_id"=>"7005055304"}], "year"=>2010, "source"=>"PLoS ONE", "identifiers"=>{"issn"=>"19326203", "isbn"=>"1932-6203 (Electronic)\\n1932-6203 (Linking)", "pmid"=>"20805986", "scopus"=>"2-s2.0-77957892886", "doi"=>"10.1371/journal.pone.0012449", "sgr"=>"77957892886", "pui"=>"359761766"}, "id"=>"2a64dcc1-0aa6-30c9-9bfe-f3e88785ad1f", "abstract"=>"BACKGROUND: Here, insight is provided into the present knowledge on free-living nematodes associated with chemosynthetic environments in the deep sea. It was investigated if the same trends of high standing stock, low diversity, and the dominance of a specialized fauna, as observed for macro-invertebrates, are also present in the nematodes in both vents and seeps.\\n\\nMETHODOLOGY: This review is based on existing literature, in combination with integrated analysis of datasets, obtained through the Census of Marine Life program on Biogeography of Deep-Water Chemosynthetic Ecosystems (ChEss).\\n\\nFINDINGS: Nematodes are often thriving in the sulphidic sediments of deep cold seeps, with standing stock values ocassionaly exceeding largely the numbers at background sites. Vents seem not characterized by elevated densities. Both chemosynthetic driven ecosystems are showing low nematode diversity, and high dominance of single species. Genera richness seems inversely correlated to vent and seep fluid emissions, associated with distinct habitat types. Deep-sea cold seeps and hydrothermal vents are, however, highly dissimilar in terms of community composition and dominant taxa. There is no unique affinity of particular nematode taxa with seeps or vents.\\n\\nCONCLUSIONS: It seems that shallow water relatives, rather than typical deep-sea taxa, have successfully colonized the reduced sediments of seeps at large water depth. For vents, the taxonomic similarity with adjacent regular sediments is much higher, supporting rather the importance of local adaptation, than that of long distance distribution. Likely the ephemeral nature of vents, its long distance offshore and the absence of pelagic transport mechanisms, have prevented so far the establishment of a successful and typical vent nematode fauna. Some future perspectives in meiofauna research are provided in order to get a more integrated picture of vent and seep biological processes, including all components of the marine ecosystem.", "link"=>"http://www.mendeley.com/research/ecology-biogeography-freeliving-nematodes-associated-chemosynthetic-environments-deep-sea-review", "reader_count"=>104, "reader_count_by_academic_status"=>{"Unspecified"=>1, "Professor > Associate Professor"=>6, "Researcher"=>32, "Student > Doctoral Student"=>4, "Student > Ph. D. Student"=>23, "Student > Postgraduate"=>1, "Student > Master"=>16, "Other"=>6, "Student > Bachelor"=>11, "Professor"=>4}, "reader_count_by_user_role"=>{"Unspecified"=>1, "Professor > Associate Professor"=>6, "Researcher"=>32, "Student > Doctoral Student"=>4, "Student > Ph. D. Student"=>23, "Student > Postgraduate"=>1, "Student > Master"=>16, "Other"=>6, "Student > Bachelor"=>11, "Professor"=>4}, "reader_count_by_subject_area"=>{"Unspecified"=>4, "Environmental Science"=>16, "Biochemistry, Genetics and Molecular Biology"=>3, "Agricultural and Biological Sciences"=>68, "Physics and Astronomy"=>1, "Chemistry"=>1, "Social Sciences"=>1, "Earth and Planetary Sciences"=>10}, "reader_count_by_subdiscipline"=>{"Chemistry"=>{"Chemistry"=>1}, "Social Sciences"=>{"Social Sciences"=>1}, "Physics and Astronomy"=>{"Physics and Astronomy"=>1}, "Earth and Planetary Sciences"=>{"Earth and Planetary Sciences"=>10}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>68}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>3}, "Unspecified"=>{"Unspecified"=>4}, "Environmental Science"=>{"Environmental Science"=>16}}, "reader_count_by_country"=>{"Sweden"=>1, "Belgium"=>1, "United States"=>2, "Taiwan"=>1, "Brazil"=>1, "Mexico"=>2, "United Kingdom"=>1, "Kenya"=>1}, "group_count"=>10}

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  • {"files"=>["https://ndownloader.figshare.com/files/832383"], "description"=>"<p>Permuted sample-based rarefraction curves for observed genera in deep-sea control samples: A. 27 samples (black colour code), cold seeps ; B. 20 samples (green colour code), and hydrothermal vents; C. 22 samples (red colour code).</p>", "links"=>[], "tags"=>["sample-based", "rarefraction", "curves", "observed", "genera", "deep-sea", "27", "samples", "colour", "seeps", "20", "hydrothermal", "22"], "article_id"=>502730, "categories"=>["Marine Biology", "Biochemistry", "Ecology"], "users"=>["Ann Vanreusel", "Annelies De Groote", "Sabine Gollner", "Monika Bright"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0012449.g002", "stats"=>{"downloads"=>2, "page_views"=>15, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Permuted_sample_based_rarefraction_curves_for_observed_genera_in_deep_sea_control_samples_A_27_samples_black_colour_code_cold_seeps_B_20_samples_green_colour_code_and_hydrothermal_vents_C_22_samples_red_colour_code_/502730", "title"=>"Permuted sample-based rarefraction curves for observed genera in deep-sea control samples: A. 27 samples (black colour code), cold seeps ; B. 20 samples (green colour code), and hydrothermal vents; C. 22 samples (red colour code).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-20 23:40:37"}
  • {"files"=>["https://ndownloader.figshare.com/files/832844"], "description"=>"<p>Overview of nematode abundance data from deep and shallow cold seeps, hydrothermal vents and whale falls. For seeps and vents only studies at higher taxonomic level are included.</p>", "links"=>[], "tags"=>["seeps"], "article_id"=>503213, "categories"=>["Marine Biology", "Biochemistry", "Ecology"], "users"=>["Ann Vanreusel", "Annelies De Groote", "Sabine Gollner", "Monika Bright"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0012449.t001", "stats"=>{"downloads"=>3, "page_views"=>11, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Meiofauna_at_seeps_and_vents_/503213", "title"=>"Meiofauna at seeps and vents.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-20 23:43:12"}
  • {"files"=>["https://ndownloader.figshare.com/files/832496"], "description"=>"<p>In addition to division into ecosystems by colour code, habitats of ecosystem are discriminated by different signs into (1) control seep sediment, (2) control vent basalt (both Control), (3) s-reduced sediments, (4) s-Siboglinid, (5) s-bacterial mats, (6) s-bivalves (s = seep; 3–6 all infauna), (7) v-on bivalves (v = vent, epifauna), (8) v-in bivalves (v = vent, infauna), and (9) vestimentiferans (v = vent, epifauna).</p>", "links"=>[], "tags"=>["mds", "configuration", "20", "samples", "deep-sea", "seeps", "22", "hydrothermal", "vents", "27"], "article_id"=>502845, "categories"=>["Marine Biology", "Biochemistry", "Ecology"], "users"=>["Ann Vanreusel", "Annelies De Groote", "Sabine Gollner", "Monika Bright"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0012449.g003", "stats"=>{"downloads"=>1, "page_views"=>12, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_2_dimensional_MDS_configuration_plot_for_20_samples_from_deep_sea_cold_seeps_all_in_green_colour_22_samples_from_hydrothermal_vents_all_in_red_colour_and_27_samples_from_control_samples_all_in_black_/502845", "title"=>"2-dimensional MDS configuration plot for 20 samples from deep-sea cold seeps (all in green colour), 22 samples from hydrothermal vents (all in red colour), and 27 samples from control samples (all in black).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-20 23:41:14"}
  • {"files"=>["https://ndownloader.figshare.com/files/832249"], "description"=>"<p>World map with indication of study sites on nematodes taxonomic composition from deep-sea vents and seeps.</p>", "links"=>[], "tags"=>["sites", "nematodes", "taxonomic", "deep-sea", "vents"], "article_id"=>502608, "categories"=>["Marine Biology", "Biochemistry", "Ecology"], "users"=>["Ann Vanreusel", "Annelies De Groote", "Sabine Gollner", "Monika Bright"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0012449.g001", "stats"=>{"downloads"=>1, "page_views"=>18, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_World_map_with_indication_of_study_sites_on_nematodes_taxonomic_composition_from_deep_sea_vents_and_seeps_/502608", "title"=>"World map with indication of study sites on nematodes taxonomic composition from deep-sea vents and seeps.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-20 23:39:56"}
  • {"files"=>["https://ndownloader.figshare.com/files/832568"], "description"=>"<p>Division into ecosystem type is given by letters (vent (v), seep (s), and control (c)) and filled signs (for v and s) and open signs (for c). Detailed biogeographical information is specified by letter codes: Atlantic (A), Pacific (P), North (N), West (W), NW (Northwest), SE (Southeast).</p>", "links"=>[], "tags"=>["mds", "configuration", "deep-sea", "samples", "atlantic", "colour", "pacific"], "article_id"=>502931, "categories"=>["Marine Biology", "Biochemistry", "Ecology"], "users"=>["Ann Vanreusel", "Annelies De Groote", "Sabine Gollner", "Monika Bright"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0012449.g004", "stats"=>{"downloads"=>3, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_2_dimensional_MDS_configuration_plot_for_deep_sea_seep_vent_and_control_samples_from_the_Atlantic_pink_colour_code_and_from_the_Pacific_blue_color_code_/502931", "title"=>"2-dimensional MDS configuration plot for deep-sea seep, vent, and control samples from the Atlantic (pink colour code) and from the Pacific (blue color code).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-20 23:41:39"}
  • {"files"=>["https://ndownloader.figshare.com/files/832669"], "description"=>"<p>Overview of nematode abundance and dominant species/genera data from shallow cold seeps and hydrothermal vents.</p>", "links"=>[], "tags"=>["seeps", "hydrothermal"], "article_id"=>503034, "categories"=>["Marine Biology", "Biochemistry", "Ecology"], "users"=>["Ann Vanreusel", "Annelies De Groote", "Sabine Gollner", "Monika Bright"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0012449.t004", "stats"=>{"downloads"=>5, "page_views"=>11, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Shallow_seeps_and_hydrothermal_vents_/503034", "title"=>"Shallow seeps and hydrothermal vents.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-20 23:42:16"}
  • {"files"=>["https://ndownloader.figshare.com/files/832732"], "description"=>"<p>Information is also given for control samples (control) (no direct influence of chemosysnthesis), epi- and infauna of chemosynthetic habitats (Chem. H.), and various habitat types of vents and seeps. In adddition to the univariate diversity measurments, similarity (sim. %) based on Bray Curtis similarity is given.</p>", "links"=>[], "tags"=>["nematode", "genera", "richness", "deviation", "evenness", "shannon", "presented", "deep-sea", "seeps", "hydrothermal", "vents"], "article_id"=>503067, "categories"=>["Marine Biology", "Biochemistry", "Ecology"], "users"=>["Ann Vanreusel", "Annelies De Groote", "Sabine Gollner", "Monika Bright"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0012449.t005", "stats"=>{"downloads"=>7, "page_views"=>14, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Mean_nematode_genera_richness_S_standard_deviation_of_genera_richness_S_stdv_Pielou_s_evenness_J_and_its_standard_deviation_and_Shannon_diversity_index_H_loge_and_its_standard_deviation_are_presented_for_all_yet_available_data_from_deep_sea_cold_seeps_se/503067", "title"=>"Mean nematode genera richness (S), standard deviation of genera richness (S stdv), Pielou's evenness (J′) and its standard deviation, and Shannon diversity index (H′<sub>loge</sub>) and its standard deviation are presented for all yet available data from deep-sea cold seeps (seep) and hydrothermal vents (vent).", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-20 23:42:28"}
  • {"files"=>["https://ndownloader.figshare.com/files/832645"], "description"=>"<p>In addition, dissimilarity (dissim.) (%), based on Bray Curtis similarity, and Anosim's R and p are presented to show significant differences (p values<0.05 are marked in bold) of different ecosystems and habitats.</p>", "links"=>[], "tags"=>["t-test", "genera", "richness", "evenness", "shannon"], "article_id"=>503002, "categories"=>["Marine Biology", "Biochemistry", "Ecology"], "users"=>["Ann Vanreusel", "Annelies De Groote", "Sabine Gollner", "Monika Bright"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0012449.t006", "stats"=>{"downloads"=>2, "page_views"=>20, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Results_of_student_s_t_test_p_are_given_for_genera_richness_S_Pielou_s_evenness_J_and_Shannon_diversity_index_H_loge_/503002", "title"=>"Results of student's t-test (p) are given for genera richness (S), Pielou's evenness (J′), and Shannon diversity index (H′<sub>loge</sub>).", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-20 23:42:03"}

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