DNA Barcoding the Geometrid Fauna of Bavaria (Lepidoptera): Successes, Surprises, and Questions
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{"title"=>"Dna barcoding the geometrid fauna of bavaria (lepidoptera): Successes, surprises, and questions", "type"=>"journal", "authors"=>[{"first_name"=>"Axel", "last_name"=>"Hausmann", "scopus_author_id"=>"7003282177"}, {"first_name"=>"Gerhard", "last_name"=>"Haszprunar", "scopus_author_id"=>"7003467854"}, {"first_name"=>"Paul D.N.", "last_name"=>"Hebert", "scopus_author_id"=>"7101661178"}], "year"=>2011, "source"=>"PLoS ONE", "identifiers"=>{"pmid"=>"21423340", "doi"=>"10.1371/journal.pone.0017134", "sgr"=>"79951984781", "isbn"=>"1932-6203 (Electronic)\\r1932-6203 (Linking)", "scopus"=>"2-s2.0-79951984781", "issn"=>"19326203", "pui"=>"361321159"}, "id"=>"2ca83857-569d-3943-8493-d28588365df2", "abstract"=>"The State of Bavaria is involved in a research program that will lead to the construction of a DNA barcode library for all animal species within its territorial boundaries. The present study provides a comprehensive DNA barcode library for the Geometridae, one of the most diverse of insect families.", "link"=>"http://www.mendeley.com/research/dna-barcoding-geometrid-fauna-bavaria-lepidoptera-successes-surprises-questions", "reader_count"=>88, "reader_count_by_academic_status"=>{"Unspecified"=>1, "Professor > Associate Professor"=>4, "Researcher"=>27, "Student > Doctoral Student"=>3, "Student > Ph. D. Student"=>23, "Student > Postgraduate"=>4, "Student > Master"=>13, "Other"=>4, "Student > Bachelor"=>6, "Lecturer > Senior Lecturer"=>2, "Professor"=>1}, "reader_count_by_user_role"=>{"Unspecified"=>1, "Professor > Associate Professor"=>4, "Researcher"=>27, "Student > Doctoral Student"=>3, "Student > Ph. D. Student"=>23, "Student > Postgraduate"=>4, "Student > Master"=>13, "Other"=>4, "Student > Bachelor"=>6, "Lecturer > Senior Lecturer"=>2, "Professor"=>1}, "reader_count_by_subject_area"=>{"Unspecified"=>2, "Engineering"=>1, "Environmental Science"=>7, "Biochemistry, Genetics and Molecular Biology"=>5, "Agricultural and Biological Sciences"=>71, "Medicine and Dentistry"=>2}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>1}, "Medicine and Dentistry"=>{"Medicine and Dentistry"=>2}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>71}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>5}, "Unspecified"=>{"Unspecified"=>2}, "Environmental Science"=>{"Environmental Science"=>7}}, "reader_count_by_country"=>{"Canada"=>1, "Belgium"=>2, "United States"=>1, "Brazil"=>1, "United Kingdom"=>1, "Italy"=>1, "Mexico"=>1, "France"=>2, "Germany"=>2, "Estonia"=>1, "Spain"=>2}, "group_count"=>7}

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Figshare

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  • {"files"=>["https://ndownloader.figshare.com/files/798659"], "description"=>"<p>Branches with specimen ID-number from BOLD and species name. Both T. cembrae and T. cembrae mugo may be synonyms (‘ecological races’) of Thera obeliscata.</p>", "links"=>[], "tags"=>["joining", "fragments", "coi", "divergences", "bavarian", "specimens"], "article_id"=>469025, "categories"=>["Ecology", "Genetics", "Evolutionary Biology"], "users"=>["Axel Hausmann", "Gerhard Haszprunar", "Paul D. N. Hebert"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0017134.g003", "stats"=>{"downloads"=>1, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Neighbour_joining_tree_K2P_fragments_of_gt_500_bp_of_COI_divergences_among_Bavarian_specimens_of_Thera_/469025", "title"=>"Neighbour joining tree (K2P, fragments of >500 bp), of COI divergences among Bavarian specimens of Thera.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2011-02-14 02:30:25"}
  • {"files"=>["https://ndownloader.figshare.com/files/798867"], "description"=>"<p>All results are based on comparison of 658 bp amplicons. min p.d.  =  minimum pairwise distance. * The analysis for <i>Chloroclysta miata</i> was performed with extraterritorial data.</p>", "links"=>[], "tags"=>["15", "pairs", "bavarian", "geometrid", "pairwise"], "article_id"=>469238, "categories"=>["Ecology", "Genetics", "Evolutionary Biology"], "users"=>["Axel Hausmann", "Gerhard Haszprunar", "Paul D. N. Hebert"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0017134.t001", "stats"=>{"downloads"=>1, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_A_list_of_the_15_pairs_of_Bavarian_geometrid_species_with_a_minimum_pairwise_distance_K2P_of_1_0_to_4_0_/469238", "title"=>"A list of the 15 pairs of Bavarian geometrid species with a minimum pairwise distance (K2P) of 1.0 to 4.0%.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2011-02-14 02:33:58"}
  • {"files"=>["https://ndownloader.figshare.com/files/798507"], "description"=>"<p>Branches with specimen ID-number from BOLD and species name. The consistent barcode divergence of 1.4% coupled with morphological and ecological differences confirms that these taxa are different species.</p>", "links"=>[], "tags"=>["joining", "bavarian", "specimens", "eupithecia", "absinthiata"], "article_id"=>468870, "categories"=>["Ecology", "Genetics", "Evolutionary Biology"], "users"=>["Axel Hausmann", "Gerhard Haszprunar", "Paul D. N. Hebert"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0017134.g002", "stats"=>{"downloads"=>1, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Neighbour_joining_tree_K2P_for_Bavarian_specimens_of_Eupithecia_absinthiata_and_E_goossensiata_/468870", "title"=>"Neighbour joining tree (K2P) for Bavarian specimens of Eupithecia absinthiata and E. goossensiata.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2011-02-14 02:27:50"}
  • {"files"=>["https://ndownloader.figshare.com/files/399364", "https://ndownloader.figshare.com/files/399444", "https://ndownloader.figshare.com/files/399508"], "description"=>"<div><h3>Background</h3><p>The State of Bavaria is involved in a research program that will lead to the construction of a DNA barcode library for all animal species within its territorial boundaries. The present study provides a comprehensive DNA barcode library for the Geometridae, one of the most diverse of insect families.</p> <h3>Methodology/Principal Findings</h3><p>This study reports DNA barcodes for 400 Bavarian geometrid species, 98 per cent of the known fauna, and approximately one per cent of all Bavarian animal species. Although 98.5% of these species possess diagnostic barcode sequences in Bavaria, records from neighbouring countries suggest that species-level resolution may be compromised in up to 3.5% of cases. All taxa which apparently share barcodes are discussed in detail. One case of modest divergence (1.4%) revealed a species overlooked by the current taxonomic system: Eupithecia goossensiata Mabille, 1869 stat.n. is raised from synonymy with Eupithecia absinthiata (Clerck, 1759) to species rank. Deep intraspecific sequence divergences (>2%) were detected in 20 traditionally recognized species.</p> <h3>Conclusions/Significance</h3><p>The study emphasizes the effectiveness of DNA barcoding as a tool for monitoring biodiversity. Open access is provided to a data set that includes records for 1,395 geometrid specimens (331 species) from Bavaria, with 69 additional species from neighbouring regions. Taxa with deep intraspecific sequence divergences are undergoing more detailed analysis to ascertain if they represent cases of cryptic diversity.</p> </div>", "links"=>[], "tags"=>["dna", "barcoding", "geometrid", "fauna", "bavaria", "questions"], "article_id"=>138887, "categories"=>["Ecology", "Genetics", "Evolutionary Biology"], "users"=>["Axel Hausmann", "Gerhard Haszprunar", "Paul D. N. Hebert"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0017134.s001", "https://dx.doi.org/10.1371/journal.pone.0017134.s002", "https://dx.doi.org/10.1371/journal.pone.0017134.s003"], "stats"=>{"downloads"=>15, "page_views"=>38, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/DNA_Barcoding_the_Geometrid_Fauna_of_Bavaria_Lepidoptera_Successes_Surprises_and_Questions/138887", "title"=>"DNA Barcoding the Geometrid Fauna of Bavaria (Lepidoptera): Successes, Surprises, and Questions", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2011-02-14 02:28:07"}
  • {"files"=>["https://ndownloader.figshare.com/files/798393"], "description"=>"<p>Histogram of species numbers (n) by 0.5 per cent-classes. This analysis is based on a comparison of 658 bp barcode records from the study area. Twenty additional species with intra-specific divergences greater than two per cent were excluded.</p>", "links"=>[], "tags"=>["k2p", "distances", "283", "bavarian", "geometrid"], "article_id"=>468763, "categories"=>["Ecology", "Genetics", "Evolutionary Biology"], "users"=>["Axel Hausmann", "Gerhard Haszprunar", "Paul D. N. Hebert"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0017134.g001", "stats"=>{"downloads"=>1, "page_views"=>37, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Nearest_Neighbour_NN_K2P_distances_for_283_Bavarian_geometrid_species_/468763", "title"=>"Nearest-Neighbour (NN) K2P distances for 283 Bavarian geometrid species.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2011-02-14 02:26:03"}

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