Phylogenetic Analysis of Conservation Priorities for Aquatic Mammals and Their Terrestrial Relatives, with a Comparison of Methods
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{"title"=>"Phylogenetic analysis of conservation priorities for aquatic mammals and their terrestrial relatives, with a comparison of methods", "type"=>"journal", "authors"=>[{"first_name"=>"Laura J.", "last_name"=>"May-Collado", "scopus_author_id"=>"11142271600"}, {"first_name"=>"Ingi", "last_name"=>"Agnarsson", "scopus_author_id"=>"6603267245"}], "year"=>2011, "source"=>"PLoS ONE", "identifiers"=>{"issn"=>"19326203", "scopus"=>"2-s2.0-79960738332", "pui"=>"362208629", "doi"=>"10.1371/journal.pone.0022562", "isbn"=>"1932-6203", "sgr"=>"79960738332", "pmid"=>"21799899"}, "id"=>"549a4daa-ae77-36a6-9c95-8cb74abcd721", "abstract"=>"Habitat loss and overexploitation are among the primary factors threatening populations of many mammal species. Recently, aquatic mammals have been highlighted as particularly vulnerable. Here we test (1) if aquatic mammals emerge as more phylogenetically urgent conservation priorities than their terrestrial relatives, and (2) if high priority species are receiving sufficient conservation effort. We also compare results among some phylogenetic conservation methods.", "link"=>"http://www.mendeley.com/research/phylogenetic-analysis-conservation-priorities-aquatic-mammals-terrestrial-relatives-comparison-metho", "reader_count"=>114, "reader_count_by_academic_status"=>{"Professor > Associate Professor"=>6, "Researcher"=>22, "Student > Doctoral Student"=>4, "Student > Ph. D. Student"=>25, "Student > Postgraduate"=>7, "Student > Master"=>22, "Other"=>5, "Student > Bachelor"=>17, "Lecturer"=>1, "Professor"=>5}, "reader_count_by_user_role"=>{"Professor > Associate Professor"=>6, "Researcher"=>22, "Student > Doctoral Student"=>4, "Student > Ph. D. Student"=>25, "Student > Postgraduate"=>7, "Student > Master"=>22, "Other"=>5, "Student > Bachelor"=>17, "Lecturer"=>1, "Professor"=>5}, "reader_count_by_subject_area"=>{"Engineering"=>1, "Environmental Science"=>15, "Biochemistry, Genetics and Molecular Biology"=>1, "Agricultural and Biological Sciences"=>90, "Medicine and Dentistry"=>1, "Business, Management and Accounting"=>1, "Computer Science"=>2, "Earth and Planetary Sciences"=>3}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>1}, "Medicine and Dentistry"=>{"Medicine and Dentistry"=>1}, "Earth and Planetary Sciences"=>{"Earth and Planetary Sciences"=>3}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>90}, "Computer Science"=>{"Computer Science"=>2}, "Business, Management and Accounting"=>{"Business, Management and Accounting"=>1}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>1}, "Environmental Science"=>{"Environmental Science"=>15}}, "reader_count_by_country"=>{"Colombia"=>1, "Canada"=>1, "Czech Republic"=>1, "Puerto Rico"=>1, "United States"=>1, "Brazil"=>8, "Mexico"=>1, "Slovenia"=>1, "France"=>1, "Portugal"=>1, "India"=>2, "Spain"=>1}, "group_count"=>7}

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/753788"], "description"=>"<p>Species in bold are listed as conservation priorities by the multiple analysis (see <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0022562#pone-0022562-t003\" target=\"_blank\">Tables 3</a>, <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0022562#pone.0022562.s002\" target=\"_blank\">S2</a>). (T = Terrestrial, M = Marine, F = Freshwater).</p>", "links"=>[], "tags"=>["30", "evolutionarily"], "article_id"=>424160, "categories"=>["Ecology", "Genetics", "Evolutionary Biology"], "users"=>["Laura J. May-Collado", "Ingi Agnarsson"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0022562.t004", "stats"=>{"downloads"=>5, "page_views"=>11, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Top_30_most_evolutionarily_distinct_ED_species_for_Cetartiodactyla_/424160", "title"=>"Top 30 most evolutionarily distinct (ED) species for Cetartiodactyla.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2011-07-25 01:09:20"}
  • {"files"=>["https://ndownloader.figshare.com/files/753609"], "description"=>"<p>(Red dots = Critically Endangered, Orange dots = Endangered, Yellow dots = Vulnerable, Dark Green dots = Least Concern, Light Green = Near Threat, Blue = Data Deficient).</p>", "links"=>[], "tags"=>["priorities", "hedge", "cetartiodactyla", "pessimistic"], "article_id"=>423981, "categories"=>["Ecology", "Genetics", "Evolutionary Biology"], "users"=>["Laura J. May-Collado", "Ingi Agnarsson"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0022562.g001", "stats"=>{"downloads"=>2, "page_views"=>15, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Conservation_priorities_based_on_the_agreement_between_EDGE_and_HEDGE_for_Cetartiodactyla_using_the_pessimistic_transformation_/423981", "title"=>"Conservation priorities based on the agreement between EDGE and HEDGE for Cetartiodactyla using the pessimistic transformation.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2011-07-25 01:06:21"}
  • {"files"=>["https://ndownloader.figshare.com/files/753838"], "description"=>"<p>Species in bold are also among the top 30 most evolutionary distinct species (See <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0022562#pone-0022562-t005\" target=\"_blank\">Table 5</a>) (T = Terrestrial, M = Marine, F = Freshwater).</p>", "links"=>[], "tags"=>["30", "carnivore", "hedge", "transformed"], "article_id"=>424218, "categories"=>["Ecology", "Genetics", "Evolutionary Biology"], "users"=>["Laura J. May-Collado", "Ingi Agnarsson"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0022562.t002", "stats"=>{"downloads"=>3, "page_views"=>2, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Top_30_conservation_priority_of_carnivore_species_according_with_HEDGE_analysis_of_the_8216_pessimistic_8217_transformed_data_/424218", "title"=>"Top 30 conservation priority of carnivore species according with HEDGE analysis of the ‘pessimistic’ transformed data.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2011-07-25 01:10:18"}
  • {"files"=>["https://ndownloader.figshare.com/files/753871"], "description"=>"<p>Species in bold are also among the top 30 most evolutionary distinct species (See <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0022562#pone-0022562-t004\" target=\"_blank\">Table 4</a>). (T = Terrestrial, M = Marine, F = Freshwater).</p>", "links"=>[], "tags"=>["30", "cetartiodactylan", "hedge", "transformed"], "article_id"=>424244, "categories"=>["Ecology", "Genetics", "Evolutionary Biology"], "users"=>["Laura J. May-Collado", "Ingi Agnarsson"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0022562.t001", "stats"=>{"downloads"=>1, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Top_30_conservation_priority_cetartiodactylan_species_according_with_HEDGE_analysis_of_the_8216_pessimistic_8217_transformed_data_/424244", "title"=>"Top 30 conservation priority cetartiodactylan species according with HEDGE analysis of the ‘pessimistic’ transformed data.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2011-07-25 01:10:44"}
  • {"files"=>["https://ndownloader.figshare.com/files/378915", "https://ndownloader.figshare.com/files/378928"], "description"=>"<div><h3>Background</h3><p>Habitat loss and overexploitation are among the primary factors threatening populations of many mammal species. Recently, aquatic mammals have been highlighted as particularly vulnerable. Here we test (1) if aquatic mammals emerge as more phylogenetically urgent conservation priorities than their terrestrial relatives, and (2) if high priority species are receiving sufficient conservation effort. We also compare results among some phylogenetic conservation methods.</p> <h3>Methodology/Principal Findings</h3><p>A phylogenetic analysis of conservation priorities for all 620 species of Cetartiodactyla and Carnivora, including most aquatic mammals. Conservation priority ranking of aquatic versus terrestrial species is approximately proportional to their diversity. However, nearly all obligated freshwater cetartiodactylans are among the top conservation priority species. Further, ∼74% and 40% of fully aquatic cetartiodactylans and carnivores, respectively, are either threatened or data deficient, more so than their terrestrial relatives. Strikingly, only 3% of all ‘high priority’ species are thought to be stable. An overwhelming 97% of these species thus either show decreasing population trends (87%) or are insufficiently known (10%). Furthermore, a disproportional number of highly evolutionarily distinct species are experiencing population decline, thus, such species should be closely monitored even if not currently threatened. Comparison among methods reveals that exact species ranking differs considerably among methods, nevertheless, most top priority species consistently rank high under any method. While we here favor one approach, we also suggest that a consensus approach may be useful when methods disagree.</p> <h3>Conclusions/Significance</h3><p>These results reinforce prior findings, suggesting there is an urgent need to gather basic conservation data for aquatic mammals, and special conservation focus is needed on those confined to freshwater. That evolutionarily distinct—and thus ‘biodiverse’—species are faring relatively poorly is alarming and requires further study. Our results offer a detailed guide to phylogeny-based conservation prioritization for these two orders.</p> </div>", "links"=>[], "tags"=>["phylogenetic", "priorities", "aquatic", "mammals", "terrestrial", "methods"], "article_id"=>134882, "categories"=>["Ecology", "Genetics", "Evolutionary Biology"], "users"=>["Laura J. May-Collado", "Ingi Agnarsson"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0022562.s001", "https://dx.doi.org/10.1371/journal.pone.0022562.s002"], "stats"=>{"downloads"=>7, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Phylogenetic_Analysis_of_Conservation_Priorities_for_Aquatic_Mammals_and_Their_Terrestrial_Relatives_with_a_Comparison_of_Methods/134882", "title"=>"Phylogenetic Analysis of Conservation Priorities for Aquatic Mammals and Their Terrestrial Relatives, with a Comparison of Methods", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2011-07-25 01:21:22"}
  • {"files"=>["https://ndownloader.figshare.com/files/753809"], "description"=>"<p>In bold are aquatic and semi-aquatic species (see complete species list in <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0022562#pone.0022562.s002\" target=\"_blank\">Table S2</a>).</p>", "links"=>[], "tags"=>["cetartiodactylan", "carnivore"], "article_id"=>424185, "categories"=>["Ecology", "Genetics", "Evolutionary Biology"], "users"=>["Laura J. May-Collado", "Ingi Agnarsson"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0022562.t003", "stats"=>{"downloads"=>0, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Top_cetartiodactylan_and_carnivore_conservation_priority_species_obtained_from_the_multiple_analysis_and_approaches_/424185", "title"=>"Top cetartiodactylan and carnivore conservation priority species obtained from the multiple analysis and approaches.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2011-07-25 01:09:45"}
  • {"files"=>["https://ndownloader.figshare.com/files/753706"], "description"=>"<p>(Red dots = Critically Endangered, Orange dots = Endangered, Yellow dots = Vulnerable, Dark Green dots = Least Concern, Light Green = Near Threat, Blue = Data Deficient).</p>", "links"=>[], "tags"=>["priorities", "hedge", "carnivora", "pessimistic"], "article_id"=>424083, "categories"=>["Ecology", "Genetics", "Evolutionary Biology"], "users"=>["Laura J. May-Collado", "Ingi Agnarsson"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0022562.g002", "stats"=>{"downloads"=>1, "page_views"=>16, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Conservation_priorities_based_on_the_agreement_between_EDGE_and_HEDGE_for_Carnivora_using_the_pessimistic_transformation_/424083", "title"=>"Conservation priorities based on the agreement between EDGE and HEDGE for Carnivora using the pessimistic transformation.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2011-07-25 01:08:03"}
  • {"files"=>["https://ndownloader.figshare.com/files/753757"], "description"=>"<p>Species in bold are listed as conservation priorities by the multiple analysis (see <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0022562#pone-0022562-t003\" target=\"_blank\">Tables 3</a>, <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0022562#pone.0022562.s002\" target=\"_blank\">S2</a>). (T = Terrestrial, M = Marine, F = Freshwater).</p>", "links"=>[], "tags"=>["30", "evolutionarily"], "article_id"=>424132, "categories"=>["Ecology", "Genetics", "Evolutionary Biology"], "users"=>["Laura J. May-Collado", "Ingi Agnarsson"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0022562.t005", "stats"=>{"downloads"=>1, "page_views"=>12, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Top_30_most_evolutionarily_distinct_ED_species_for_Carnivora_/424132", "title"=>"Top 30 most evolutionarily distinct (ED) species for Carnivora.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2011-07-25 01:08:52"}

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Relative Metric

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