Chasing Jenner's Vaccine: Revisiting Cowpox Virus Classification
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{"title"=>"Chasing Jenner's vaccine: Revisiting Cowpox virus classification", "type"=>"journal", "authors"=>[{"first_name"=>"Darin S.", "last_name"=>"Carroll", "scopus_author_id"=>"7202921830"}, {"first_name"=>"Ginny L.", "last_name"=>"Emerson", "scopus_author_id"=>"16834516900"}, {"first_name"=>"Yu", "last_name"=>"Li", "scopus_author_id"=>"36242100000"}, {"first_name"=>"Scott", "last_name"=>"Sammons", "scopus_author_id"=>"8902197500"}, {"first_name"=>"Victoria", "last_name"=>"Olson", "scopus_author_id"=>"7003977049"}, {"first_name"=>"Michael", "last_name"=>"Frace", "scopus_author_id"=>"6508253305"}, {"first_name"=>"Yoshinori", "last_name"=>"Nakazawa", "scopus_author_id"=>"13004443000"}, {"first_name"=>"Claus Peter", "last_name"=>"Czerny", "scopus_author_id"=>"7006689262"}, {"first_name"=>"Morten", "last_name"=>"Tryland", "scopus_author_id"=>"7003268698"}, {"first_name"=>"Jolanta", "last_name"=>"Kolodziejek", "scopus_author_id"=>"6601980660"}, {"first_name"=>"Norbert", "last_name"=>"Nowotny", "scopus_author_id"=>"7005482650"}, {"first_name"=>"Melissa", "last_name"=>"Olsen-Rasmussen", "scopus_author_id"=>"6506504516"}, {"first_name"=>"Marina", "last_name"=>"Khristova", "scopus_author_id"=>"7005582015"}, {"first_name"=>"Dhwani", "last_name"=>"Govil", "scopus_author_id"=>"23008104900"}, {"first_name"=>"Kevin", "last_name"=>"Karem", "scopus_author_id"=>"8873556500"}, {"first_name"=>"Inger K.", "last_name"=>"Damon", "scopus_author_id"=>"6603428543"}, {"first_name"=>"Hermann", "last_name"=>"Meyer", "scopus_author_id"=>"7404226489"}], "year"=>2011, "source"=>"PLoS ONE", "identifiers"=>{"sgr"=>"79961202383", "doi"=>"10.1371/journal.pone.0023086", "issn"=>"19326203", "pui"=>"362294556", "isbn"=>"1932-6203 (Electronic)\\r1932-6203 (Linking)", "pmid"=>"21858000", "scopus"=>"2-s2.0-79961202383"}, "id"=>"8ae74103-642b-3bde-9209-cc9763f45072", "abstract"=>"Cowpox virus (CPXV) is described as the source of the first vaccine used to prevent the onset and spread of an infectious disease. It is one of the earliest described members of the genus Orthopoxvirus, which includes the viruses that cause smallpox and monkeypox in humans. Both the historic and current literature describe \"cowpox\" as a disease with a single etiologic agent. Genotypic data presented herein indicate that CPXV is not a single species, but a composite of several (up to 5) species that can infect cows, humans, and other animals. The practice of naming agents after the host in which the resultant disease manifests obfuscates the true taxonomic relationships of \"cowpox\" isolates. These data support the elevation of as many as four new species within the traditional \"cowpox\" group and suggest that both wild and modern vaccine strains of Vaccinia virus are most closely related to CPXV of continental Europe rather than the United Kingdom, the homeland of the vaccine.", "link"=>"http://www.mendeley.com/research/chasing-jenners-vaccine-revisiting-cowpox-virus-classification", "reader_count"=>30, "reader_count_by_academic_status"=>{"Professor > Associate Professor"=>2, "Student > Doctoral Student"=>2, "Researcher"=>8, "Student > Ph. D. Student"=>1, "Student > Postgraduate"=>1, "Other"=>3, "Student > Master"=>4, "Student > Bachelor"=>3, "Lecturer > Senior Lecturer"=>1, "Professor"=>5}, "reader_count_by_user_role"=>{"Professor > Associate Professor"=>2, "Student > Doctoral Student"=>2, "Researcher"=>8, "Student > Ph. D. Student"=>1, "Student > Postgraduate"=>1, "Other"=>3, "Student > Master"=>4, "Student > Bachelor"=>3, "Lecturer > Senior Lecturer"=>1, "Professor"=>5}, "reader_count_by_subject_area"=>{"Unspecified"=>2, "Biochemistry, Genetics and Molecular Biology"=>2, "Agricultural and Biological Sciences"=>18, "Medicine and Dentistry"=>2, "Veterinary Science and Veterinary Medicine"=>3, "Immunology and Microbiology"=>2, "Economics, Econometrics and Finance"=>1}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>2}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>2}, "Economics, Econometrics and Finance"=>{"Economics, Econometrics and Finance"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>18}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>2}, "Unspecified"=>{"Unspecified"=>2}, "Veterinary Science and Veterinary Medicine"=>{"Veterinary Science and Veterinary Medicine"=>3}}, "reader_count_by_country"=>{"Norway"=>1, "South Africa"=>1, "Chile"=>1, "Germany"=>2}, "group_count"=>0}

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/376963"], "description"=>"<div><p><em>Cowpox virus</em> (CPXV) is described as the source of the first vaccine used to prevent the onset and spread of an infectious disease. It is one of the earliest described members of the genus <em>Orthopoxvirus</em>, which includes the viruses that cause smallpox and monkeypox in humans. Both the historic and current literature describe “cowpox” as a disease with a single etiologic agent. Genotypic data presented herein indicate that CPXV is not a single species, but a composite of several (up to 5) species that can infect cows, humans, and other animals. The practice of naming agents after the host in which the resultant disease manifests obfuscates the true taxonomic relationships of “cowpox” isolates. These data support the elevation of as many as four new species within the traditional “cowpox” group and suggest that both wild and modern vaccine strains of <em>Vaccinia virus</em> are most closely related to CPXV of continental Europe rather than the United Kingdom, the homeland of the vaccine.</p> </div>", "links"=>[], "tags"=>["chasing", "revisiting", "classification"], "article_id"=>134464, "categories"=>["Cancer", "Microbiology", "Evolutionary Biology"], "users"=>["Darin S. Carroll", "Ginny L. Emerson", "Yu Li", "Scott Sammons", "Victoria Olson", "Michael Frace", "Yoshinori Nakazawa", "Claus Peter Czerny", "Morten Tryland", "Jolanta Kolodziejek", "Norbert Nowotny", "Melissa Olsen-Rasmussen", "Marina Khristova", "Dhwani Govil", "Kevin Karem", "Inger K. Damon", "Hermann Meyer"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0023086", "stats"=>{"downloads"=>0, "page_views"=>17, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Chasing_Jenner_s_Vaccine_Revisiting_Cowpox_Virus_Classification/134464", "title"=>"Chasing Jenner's Vaccine: Revisiting <em>Cowpox Virus</em> Classification", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2011-08-08 01:14:24"}
  • {"files"=>["https://ndownloader.figshare.com/files/748089"], "description"=>"<p>Alignment images were created in Geneious Pro™ 5.3. Isolate names are provided to the right along with the branching relationships and numbered groups presented in <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0023086#pone-0023086-g001\" target=\"_blank\">Figure 1</a>. Sequence areas depicted were extracted from the following coding regions: (A) CPXV_BR_021 (VACV_COP_C11R), secreted virulence factor, vaccinia growth factor (VGF; epidermal growth factor-like protein), promotes cell survival; (B) CPXV_BR_191 (VACV_COP_A53R), CrmC, viroceptor, soluble virus tumor necrosis factor receptor homolog, binds and antagonizes TNF-α; (C) CPXV_BR_212 (VACV_COP_B19R), viroceptor, soluble IFN α/β receptor homolog, binds and antagonizes IFN α/β. Numbers along the top of the alignment refer to the position of the region in the full genome alignment (supplementary material). Grey indicates conserved bases while colors (red, blue, yellow, green) indicate differences (A, C, G, T, respectively) with regard to the reference sequence (CPXV_GER1980_EP4) highlighted in yellow. Colored boxes identify shared nucleotide states that reflect monophyletic relationships seen in the tree. Notations below each alignment describe subsequent amino acid changes (standard IUPAC code).</p>", "links"=>[], "tags"=>["cpxv"], "article_id"=>418448, "categories"=>["Microbiology", "Virology", "Infectious Diseases", "Evolutionary Biology"], "users"=>["Darin S. Carroll", "Ginny L. Emerson", "Yu Li", "Scott Sammons", "Victoria Olson", "Michael Frace", "Yoshinori Nakazawa", "Claus Peter Czerny", "Morten Tryland", "Jolanta Kolodziejek", "Norbert Nowotny", "Melissa Olsen-Rasmussen", "Marina Khristova", "Dhwani Govil", "Kevin Karem", "Inger K. Damon", "Hermann Meyer"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0023086.g003", "stats"=>{"downloads"=>0, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Alignment_of_three_CPXV_genes_/418448", "title"=>"Alignment of three CPXV genes.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2011-08-08 02:20:48"}
  • {"files"=>["https://ndownloader.figshare.com/files/747872"], "description"=>"<p>The tree search was based on a complete coding region alignment (C23L-B29R) with gapped columns removed (145,177 bp). Posterior probabilities are shown to the right of each node in black. Uncorrected <i>p</i> distance measures were calculated from the matrix and are shown to the left of each node. Red indicates distances greater than or equal to the distance between TATV and the VARV clade (0.0154); blue indicates a distance less than this value. Additional distance measures between nodes and taxa are underlined and designated by dashed arrows. Asterisks indicate distance values at nodes where patristic distance values are above the VARV-TATV threshold and conflict with uncorrected <i>p</i> values. Cowpox-like (groups 1–4) and Vaccinia-like (group 5) clades are indicated to the right. Brackets encompass isolates or groups of isolates where distance measures separate them from their nearest neighbours at least as much as the distance between TATV and VARV. Each of these groups is labelled with a number (1–5).</p>", "links"=>[], "tags"=>["Virology", "Infectious diseases", "microbiology", "Evolutionary biology"], "article_id"=>418220, "categories"=>["Microbiology", "Virology", "Infectious Diseases", "Evolutionary Biology"], "users"=>["Darin S. Carroll", "Ginny L. Emerson", "Yu Li", "Scott Sammons", "Victoria Olson", "Michael Frace", "Yoshinori Nakazawa", "Claus Peter Czerny", "Morten Tryland", "Jolanta Kolodziejek", "Norbert Nowotny", "Melissa Olsen-Rasmussen", "Marina Khristova", "Dhwani Govil", "Kevin Karem", "Inger K. Damon", "Hermann Meyer"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0023086.g001", "stats"=>{"downloads"=>0, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_CPXV_Phylogeny_/418220", "title"=>"CPXV Phylogeny.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2011-08-08 02:17:00"}
  • {"files"=>["https://ndownloader.figshare.com/files/747975"], "description"=>"<p>The place of origin for each CPXV isolate is designated on the map. The inset shows CPXV isolates divided into five distinct clusters corresponding to those in <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0023086#pone-0023086-g001\" target=\"_blank\">Figure 1</a> and grouped by dashed lines.</p>", "links"=>[], "tags"=>["cpxv"], "article_id"=>418338, "categories"=>["Microbiology", "Virology", "Infectious Diseases", "Evolutionary Biology"], "users"=>["Darin S. Carroll", "Ginny L. Emerson", "Yu Li", "Scott Sammons", "Victoria Olson", "Michael Frace", "Yoshinori Nakazawa", "Claus Peter Czerny", "Morten Tryland", "Jolanta Kolodziejek", "Norbert Nowotny", "Melissa Olsen-Rasmussen", "Marina Khristova", "Dhwani Govil", "Kevin Karem", "Inger K. Damon", "Hermann Meyer"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0023086.g002", "stats"=>{"downloads"=>0, "page_views"=>9, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Map_of_CPXV_isolate_origins_/418338", "title"=>"Map of CPXV isolate origins.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2011-08-08 02:18:58"}
  • {"files"=>["https://ndownloader.figshare.com/files/748179"], "description"=>"<p>Information is given for CPXV isolates used in the phylogenetic analysis, including place and date of isolation, clinical information, reference and GenBank accession number.</p>", "links"=>[], "tags"=>["Virology", "Infectious diseases", "microbiology", "Evolutionary biology"], "article_id"=>418541, "categories"=>["Microbiology", "Virology", "Infectious Diseases", "Evolutionary Biology"], "users"=>["Darin S. Carroll", "Ginny L. Emerson", "Yu Li", "Scott Sammons", "Victoria Olson", "Michael Frace", "Yoshinori Nakazawa", "Claus Peter Czerny", "Morten Tryland", "Jolanta Kolodziejek", "Norbert Nowotny", "Melissa Olsen-Rasmussen", "Marina Khristova", "Dhwani Govil", "Kevin Karem", "Inger K. Damon", "Hermann Meyer"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0023086.t001", "stats"=>{"downloads"=>0, "page_views"=>12, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_CPXV_isolates_/418541", "title"=>"CPXV isolates.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2011-08-08 02:22:21"}

PMC Usage Stats | Further Information

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Relative Metric

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