Rapid Biodiversity Assessment and Monitoring Method for Highly Diverse Benthic Communities: A Case Study of Mediterranean Coralligenous Outcrops
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{"title"=>"Rapid biodiversity assessment and monitoring method for highly diverse benthic communities: A case study of mediterranean coralligenous outcrops", "type"=>"journal", "authors"=>[{"first_name"=>"Silvija", "last_name"=>"Kipson", "scopus_author_id"=>"54079973700"}, {"first_name"=>"Maïa", "last_name"=>"Fourt", "scopus_author_id"=>"6503992974"}, {"first_name"=>"Núria", "last_name"=>"Teixidó", "scopus_author_id"=>"11839568800"}, {"first_name"=>"Emma", "last_name"=>"Cebrian", "scopus_author_id"=>"56055750300"}, {"first_name"=>"Edgar", "last_name"=>"Casas", "scopus_author_id"=>"56527128500"}, {"first_name"=>"Enric", "last_name"=>"Ballesteros", "scopus_author_id"=>"7006048400"}, {"first_name"=>"Mikel", "last_name"=>"Zabala", "scopus_author_id"=>"57200330280"}, {"first_name"=>"Joaquim", "last_name"=>"Garrabou", "scopus_author_id"=>"55938079700"}], "year"=>2011, "source"=>"PLoS ONE", "identifiers"=>{"issn"=>"19326203", "scopus"=>"2-s2.0-80355136501", "pui"=>"362861813", "doi"=>"10.1371/journal.pone.0027103", "isbn"=>"1932-6203", "sgr"=>"80355136501", "pmid"=>"22073264"}, "id"=>"101eb1e5-1a5b-3814-b322-667e8a75abc3", "abstract"=>"Increasing anthropogenic pressures urge enhanced knowledge and understanding of the current state of marine biodiversity. This baseline information is pivotal to explore present trends, detect future modifications and propose adequate management actions for marine ecosystems. Coralligenous outcrops are a highly diverse and structurally complex deep-water habitat faced with major threats in the Mediterranean Sea. Despite its ecological, aesthetic and economic value, coralligenous biodiversity patterns are still poorly understood. There is currently no single sampling method that has been demonstrated to be sufficiently representative to ensure adequate community assessment and monitoring in this habitat. Therefore, we propose a rapid non-destructive protocol for biodiversity assessment and monitoring of coralligenous outcrops providing good estimates of its structure and species composition, based on photographic sampling and the determination of presence/absence of macrobenthic species. We used an extensive photographic survey, covering several spatial scales (100s of m to 100s of km) within the NW Mediterranean and including 2 different coralligenous assemblages: Paramuricea clavata (PCA) and Corallium rubrum assemblage (CRA). This approach allowed us to determine the minimal sampling area for each assemblage (5000 cm(2) for PCA and 2500 cm(2) for CRA). In addition, we conclude that 3 replicates provide an optimal sampling effort in order to maximize the species number and to assess the main biodiversity patterns of studied assemblages in variability studies requiring replicates. We contend that the proposed sampling approach provides a valuable tool for management and conservation planning, monitoring and research programs focused on coralligenous outcrops, potentially also applicable in other benthic ecosystems.", "link"=>"http://www.mendeley.com/research/rapid-biodiversity-assessment-monitoring-method-highly-diverse-benthic-communities-case-study-medite-4", "reader_count"=>118, "reader_count_by_academic_status"=>{"Unspecified"=>1, "Professor > Associate Professor"=>4, "Librarian"=>1, "Researcher"=>38, "Student > Doctoral Student"=>4, "Student > Ph. D. Student"=>33, "Student > Postgraduate"=>6, "Student > Master"=>17, "Other"=>6, "Student > Bachelor"=>5, "Lecturer"=>1, "Professor"=>2}, "reader_count_by_user_role"=>{"Unspecified"=>1, "Professor > Associate Professor"=>4, "Librarian"=>1, "Researcher"=>38, "Student > Doctoral Student"=>4, "Student > Ph. D. Student"=>33, "Student > Postgraduate"=>6, "Student > Master"=>17, "Other"=>6, "Student > Bachelor"=>5, "Lecturer"=>1, "Professor"=>2}, "reader_count_by_subject_area"=>{"Unspecified"=>4, "Environmental Science"=>35, "Agricultural and Biological Sciences"=>71, "Earth and Planetary Sciences"=>8}, "reader_count_by_subdiscipline"=>{"Earth and Planetary Sciences"=>{"Earth and Planetary Sciences"=>8}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>71}, "Unspecified"=>{"Unspecified"=>4}, "Environmental Science"=>{"Environmental Science"=>35}}, "reader_count_by_country"=>{"Greece"=>1, "United States"=>1, "Brazil"=>2, "United Kingdom"=>2, "South Africa"=>1, "Mexico"=>1, "Australia"=>1, "France"=>5, "Portugal"=>1, "Spain"=>4}, "group_count"=>12}

Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/718646"], "description"=>"<p>The local species number per unit area estimated through spatially non-explicit species-area curves (<a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0027103#pone-0027103-g004\" target=\"_blank\">Fig. 4</a>) for each site within each region. Total N: total number of species recorded at each site; Species: number of species observed by analyzing a different number of random quadrats (16, 24, 32) or a combination of contiguous quadrats (3×8 = 3 replicates of 8 contiguous quadrats); % Species: percentage of species observed in comparison to the total species number recorded. For random quadrats, calculations were based on 999 permutations of replicate samples, whereas for replicates of 8 contiguous quadrats, calculations were based on a subset of all potential replicate combinations (SD not shown).</p>", "links"=>[], "tags"=>["spatially", "non-explicit", "species-area"], "article_id"=>389001, "categories"=>["Inorganic Chemistry", "Ecology"], "users"=>["Silvija Kipson", "Maïa Fourt", "Núria Teixidó", "Emma Cebrián", "Edgar Casas", "Enric Ballesteros", "Mikel Zabala", "Joaquim Garrabou"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0027103.t002", "stats"=>{"downloads"=>0, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_local_species_number_per_unit_area_estimated_through_spatially_non_explicit_species_area_curves_/389001", "title"=>"The local species number per unit area estimated through spatially non-explicit species-area curves.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2011-11-02 02:30:01"}
  • {"files"=>["https://ndownloader.figshare.com/files/718728"], "description"=>"<p>The analyses were based on Bray-Curtis dissimilarity for macrobenthic taxa within the studied assemblages. The results were obtained from datasets based on different number of replicates of 8 contiguous quadrats and individual quadrats (25×25 cm for <i>PCA</i> and 20×20 cm for <i>CRA</i>). VC  =  Variance Components; BC diss  =  Bray Curtis dissimilarity.</p><p>P (perm) values:</p><p>*<0.05.</p><p>**<0.01.</p><p>***<0.001.</p>", "links"=>[], "tags"=>["permanova", "analyses"], "article_id"=>389085, "categories"=>["Inorganic Chemistry", "Ecology"], "users"=>["Silvija Kipson", "Maïa Fourt", "Núria Teixidó", "Emma Cebrián", "Edgar Casas", "Enric Ballesteros", "Mikel Zabala", "Joaquim Garrabou"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0027103.t004", "stats"=>{"downloads"=>0, "page_views"=>9, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Summary_of_PERMANOVA_analyses_for_the_comparison_of_Paramuricea_clavata_PCA_and_Corallium_rubrum_CRA_assemblages_/389085", "title"=>"Summary of PERMANOVA analyses for the comparison of <i>Paramuricea clavata</i> (<i>PCA</i>) and <i>Corallium rubrum</i> (<i>CRA</i>) assemblages.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2011-11-02 02:31:25"}
  • {"files"=>["https://ndownloader.figshare.com/files/363170"], "description"=>"<div><p>Increasing anthropogenic pressures urge enhanced knowledge and understanding of the current state of marine biodiversity. This baseline information is pivotal to explore present trends, detect future modifications and propose adequate management actions for marine ecosystems. Coralligenous outcrops are a highly diverse and structurally complex deep-water habitat faced with major threats in the Mediterranean Sea. Despite its ecological, aesthetic and economic value, coralligenous biodiversity patterns are still poorly understood. There is currently no single sampling method that has been demonstrated to be sufficiently representative to ensure adequate community assessment and monitoring in this habitat. Therefore, we propose a rapid non-destructive protocol for biodiversity assessment and monitoring of coralligenous outcrops providing good estimates of its structure and species composition, based on photographic sampling and the determination of presence/absence of macrobenthic species. We used an extensive photographic survey, covering several spatial scales (100s of m to 100s of km) within the NW Mediterranean and including 2 different coralligenous assemblages: <em>Paramuricea clavata</em> (<em>PCA</em>) and <em>Corallium rubrum</em> assemblage (<em>CRA</em>). This approach allowed us to determine the minimal sampling area for each assemblage (5000 cm<sup>2</sup> for PCA and 2500 cm<sup>2</sup> for CRA). In addition, we conclude that 3 replicates provide an optimal sampling effort in order to maximize the species number and to assess the main biodiversity patterns of studied assemblages in variability studies requiring replicates. We contend that the proposed sampling approach provides a valuable tool for management and conservation planning, monitoring and research programs focused on coralligenous outcrops, potentially also applicable in other benthic ecosystems.</p> </div>", "links"=>[], "tags"=>["biodiversity", "monitoring", "benthic", "mediterranean", "coralligenous", "outcrops"], "article_id"=>131784, "categories"=>["Inorganic Chemistry", "Ecology"], "users"=>["Silvija Kipson", "Maïa Fourt", "Núria Teixidó", "Emma Cebrián", "Edgar Casas", "Enric Ballesteros", "Mikel Zabala", "Joaquim Garrabou"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0027103", "stats"=>{"downloads"=>0, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Rapid_Biodiversity_Assessment_and_Monitoring_Method_for_Highly_Diverse_Benthic_Communities_A_Case_Study_of_Mediterranean_Coralligenous_Outcrops/131784", "title"=>"Rapid Biodiversity Assessment and Monitoring Method for Highly Diverse Benthic Communities: A Case Study of Mediterranean Coralligenous Outcrops", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2011-11-02 00:29:44"}
  • {"files"=>["https://ndownloader.figshare.com/files/718209"], "description"=>"<p>(A) <i>Paramuricea clavata</i> assemblage and (B) <i>Corallium rubrum</i> assemblage (black  =  Corsica, white  =  Provence and gray  =  Catalonia). In a given area, each point represents multiple measures obtained from a subset of all possible combinations of increasing numbers of the originally ordered contiguous samples, with the curve based on the mean of those measures (SD not shown). See <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0027103#pone-0027103-t001\" target=\"_blank\">Table 1</a> for site abbreviations.</p>", "links"=>[], "tags"=>["species-area", "curves", "regions", "nw"], "article_id"=>388565, "categories"=>["Inorganic Chemistry", "Ecology"], "users"=>["Silvija Kipson", "Maïa Fourt", "Núria Teixidó", "Emma Cebrián", "Edgar Casas", "Enric Ballesteros", "Mikel Zabala", "Joaquim Garrabou"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0027103.g003", "stats"=>{"downloads"=>0, "page_views"=>2, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Spatially_explicit_species_area_curves_for_each_site_within_the_3_regions_of_the_NW_Mediterranean_/388565", "title"=>"Spatially explicit species-area curves for each site within the 3 regions of the NW Mediterranean.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2011-11-02 02:22:45"}
  • {"files"=>["https://ndownloader.figshare.com/files/718113"], "description"=>"<p>Three studied regions in the NW Mediterranean and sites within them (triangles  =  sites with <i>Paramuricea clavata</i> assemblage and diamonds  =  sites with <i>Corallium rubrum</i> assemblage). See <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0027103#pone-0027103-t001\" target=\"_blank\">Table 1</a> for site abbreviations.</p>", "links"=>[], "tags"=>["nw", "mediterranean"], "article_id"=>388472, "categories"=>["Inorganic Chemistry", "Ecology"], "users"=>["Silvija Kipson", "Maïa Fourt", "Núria Teixidó", "Emma Cebrián", "Edgar Casas", "Enric Ballesteros", "Mikel Zabala", "Joaquim Garrabou"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0027103.g002", "stats"=>{"downloads"=>1, "page_views"=>25, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Map_of_the_study_area_in_the_NW_Mediterranean_Sea_/388472", "title"=>"Map of the study area in the NW Mediterranean Sea.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2011-11-02 02:21:12"}
  • {"files"=>["https://ndownloader.figshare.com/files/718381"], "description"=>"<p>Each replicate corresponds to 8 contiguous quadrats, creating a sampling unit of 50×100 cm for <i>PCA</i> and 40×80 cm for <i>CRA</i>. Three studied regions of the NW Mediterranean are depicted by colors (dark blue  =  Corsica, green  =  Catalonia and light blue  =  Provence). See <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0027103#pone-0027103-t001\" target=\"_blank\">Table 1</a> for site abbreviations.</p>", "links"=>[], "tags"=>["multidimensional", "scaling", "replicates"], "article_id"=>388739, "categories"=>["Inorganic Chemistry", "Ecology"], "users"=>["Silvija Kipson", "Maïa Fourt", "Núria Teixidó", "Emma Cebrián", "Edgar Casas", "Enric Ballesteros", "Mikel Zabala", "Joaquim Garrabou"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0027103.g005", "stats"=>{"downloads"=>1, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Non_metric_multidimensional_scaling_MDS_for_all_possible_replicates_and_3_replicates_per_site_within_the_Paramuricea_clavata_PCA_and_Corallium_rubrum_CRA_assemblages_/388739", "title"=>"Non-metric multidimensional scaling (MDS) for all possible replicates and 3 replicates per site within the <i>Paramuricea clavata</i> (<i>PCA</i>) and <i>Corallium rubrum</i> (<i>CRA</i>) assemblages.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2011-11-02 02:25:39"}
  • {"files"=>["https://ndownloader.figshare.com/files/718283"], "description"=>"<p>(A) <i>Paramuricea clavata</i> assemblage and (B) <i>Corallium rubrum</i> assemblage (black  =  Corsica, white  =  Provence and gray  =  Catalonia). Data were based on 999 permutations of replicate samples (SD not shown). See <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0027103#pone-0027103-t001\" target=\"_blank\">Table 1</a> for site abbreviations.</p>", "links"=>[], "tags"=>["non-explicit", "species-area", "curves", "regions", "nw"], "article_id"=>388637, "categories"=>["Inorganic Chemistry", "Ecology"], "users"=>["Silvija Kipson", "Maïa Fourt", "Núria Teixidó", "Emma Cebrián", "Edgar Casas", "Enric Ballesteros", "Mikel Zabala", "Joaquim Garrabou"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0027103.g004", "stats"=>{"downloads"=>1, "page_views"=>10, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Spatially_non_explicit_species_area_curves_for_each_site_within_the_3_regions_of_the_NW_Mediterranean_/388637", "title"=>"Spatially non-explicit species-area curves for each site within the 3 regions of the NW Mediterranean.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2011-11-02 02:23:57"}
  • {"files"=>["https://ndownloader.figshare.com/files/718683"], "description"=>"<p>Logarithmic functions, goodness of fit measure (r<sup>2</sup>), k parameter and minimal sampling areas (A<sub>min</sub>) calculated for each study site of the <i>Paramuricea clavata</i> and <i>Corallium rubrum</i> assemblages in the 3 regions of the NW Mediterranean. Site names are provided with abbreviations.</p>", "links"=>[], "tags"=>["functions", "fitted", "spatially", "species-area", "curves", "contiguous"], "article_id"=>389038, "categories"=>["Inorganic Chemistry", "Ecology"], "users"=>["Silvija Kipson", "Maïa Fourt", "Núria Teixidó", "Emma Cebrián", "Edgar Casas", "Enric Ballesteros", "Mikel Zabala", "Joaquim Garrabou"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0027103.t001", "stats"=>{"downloads"=>1, "page_views"=>20, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Logarithmic_functions_fitted_to_spatially_explicit_species_area_curves_based_on_the_original_order_of_contiguous_samples_/389038", "title"=>"Logarithmic functions fitted to spatially explicit species-area curves based on the original order of contiguous samples.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2011-11-02 02:30:38"}
  • {"files"=>["https://ndownloader.figshare.com/files/718502"], "description"=>"<p>(A) <i>Paramuricea clavata</i> assemblage (sampling unit of 25×25 cm), (B) <i>Corallium rubrum</i> assemblage (sampling unit of 20×20 cm) and (C) comparison of <i>P. clavata</i> and <i>C. rubrum</i> assemblages in the 3 regions of the NW Mediterranean (dark blue  =  Corsica, green  =  Catalonia and light blue  =  Provence). See <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0027103#pone-0027103-t001\" target=\"_blank\">Table 1</a> for site abbreviations.</p>", "links"=>[], "tags"=>["multidimensional", "scaling", "studied", "assemblages"], "article_id"=>388855, "categories"=>["Inorganic Chemistry", "Ecology"], "users"=>["Silvija Kipson", "Maïa Fourt", "Núria Teixidó", "Emma Cebrián", "Edgar Casas", "Enric Ballesteros", "Mikel Zabala", "Joaquim Garrabou"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0027103.g006", "stats"=>{"downloads"=>1, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Non_metric_multidimensional_scaling_MDS_for_the_studied_assemblages_and_their_comparison_/388855", "title"=>"Non-metric multidimensional scaling (MDS) for the studied assemblages and their comparison.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2011-11-02 02:27:35"}
  • {"files"=>["https://ndownloader.figshare.com/files/718600"], "description"=>"<p>The results were obtained from datasets based on different number of replicates of 8 contiguous quadrats and individual quadrats. VC  =  Variance Components; BC diss  =  Bray Curtis dissimilarity.</p><p>P (perm) values.</p><p>*<0.05.</p><p>**<0.01.</p><p>***<0.001.</p>", "links"=>[], "tags"=>["permanova", "analyses", "bray-curtis", "dissimilarity", "macrobenthic", "taxa", "studied"], "article_id"=>388952, "categories"=>["Inorganic Chemistry", "Ecology"], "users"=>["Silvija Kipson", "Maïa Fourt", "Núria Teixidó", "Emma Cebrián", "Edgar Casas", "Enric Ballesteros", "Mikel Zabala", "Joaquim Garrabou"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0027103.t003", "stats"=>{"downloads"=>0, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Summary_of_PERMANOVA_analyses_based_on_Bray_Curtis_dissimilarity_for_macrobenthic_taxa_within_the_studied_assemblages_/388952", "title"=>"Summary of PERMANOVA analyses based on Bray-Curtis dissimilarity for macrobenthic taxa within the studied assemblages.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2011-11-02 02:29:12"}
  • {"files"=>["https://ndownloader.figshare.com/files/717976"], "description"=>"<p>(A) <i>Paramuricea clavata</i> assemblage (<i>PCA</i>) and (B) <i>Corallium rubrum</i> assemblage (<i>CRA</i>). Photos by E. Ballesteros.</p>", "links"=>[], "tags"=>["facies", "coralligenous", "outcrops", "considered"], "article_id"=>388328, "categories"=>["Inorganic Chemistry", "Ecology"], "users"=>["Silvija Kipson", "Maïa Fourt", "Núria Teixidó", "Emma Cebrián", "Edgar Casas", "Enric Ballesteros", "Mikel Zabala", "Joaquim Garrabou"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0027103.g001", "stats"=>{"downloads"=>1, "page_views"=>16, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_General_aspect_of_2_facies_of_the_coralligenous_outcrops_considered_in_this_study_/388328", "title"=>"General aspect of 2 facies of the coralligenous outcrops considered in this study.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2011-11-02 02:18:48"}

PMC Usage Stats | Further Information

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Relative Metric

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