Genetic Connectivity in Scleractinian Corals across the Northern Gulf of Mexico: Oil/Gas Platforms, and Relationship to the Flower Garden Banks
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{"title"=>"Genetic connectivity in scleractinian corals across the northern Gulf of Mexico: Oil/gas platforms, and relationship to the Flower Garden Banks", "type"=>"journal", "authors"=>[{"first_name"=>"Paul W.", "last_name"=>"Sammarco", "scopus_author_id"=>"7004875378"}, {"first_name"=>"Daniel A.", "last_name"=>"Brazeau", "scopus_author_id"=>"6602986479"}, {"first_name"=>"James", "last_name"=>"Sinclair", "scopus_author_id"=>"55203444300"}], "year"=>2012, "source"=>"PLoS ONE", "identifiers"=>{"pmid"=>"22558066", "issn"=>"19326203", "doi"=>"10.1371/journal.pone.0030144", "pui"=>"364720971", "isbn"=>"1932-6203 (Electronic)\\r1932-6203 (Linking)", "scopus"=>"2-s2.0-84860428474", "sgr"=>"84860428474"}, "id"=>"cc7309a3-8123-3fd7-a629-c10705a04e56", "abstract"=>"... Both of these reproduce via brooding. Madracis decactis is a simultaneous hermaphrodite and planulates monthly between March ... Brooders generally planulate on a monthly cycle and can release larvae up to 8–10 times per year (eg, Porites astreoides) [51]. ... \\n", "link"=>"http://www.mendeley.com/research/genetic-connectivity-scleractinian-corals-across-northern-gulf-mexico-oilgas-platforms-relationship", "reader_count"=>65, "reader_count_by_academic_status"=>{"Unspecified"=>1, "Professor > Associate Professor"=>1, "Researcher"=>14, "Student > Doctoral Student"=>4, "Student > Ph. D. Student"=>20, "Student > Postgraduate"=>2, "Student > Master"=>13, "Other"=>2, "Student > Bachelor"=>4, "Lecturer"=>1, "Professor"=>3}, "reader_count_by_user_role"=>{"Unspecified"=>1, "Professor > Associate Professor"=>1, "Researcher"=>14, "Student > Doctoral Student"=>4, "Student > Ph. D. Student"=>20, "Student > Postgraduate"=>2, "Student > Master"=>13, "Other"=>2, "Student > Bachelor"=>4, "Lecturer"=>1, "Professor"=>3}, "reader_count_by_subject_area"=>{"Unspecified"=>2, "Engineering"=>1, "Environmental Science"=>12, "Biochemistry, Genetics and Molecular Biology"=>3, "Agricultural and Biological Sciences"=>42, "Social Sciences"=>1, "Earth and Planetary Sciences"=>4}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>1}, "Social Sciences"=>{"Social Sciences"=>1}, "Earth and Planetary Sciences"=>{"Earth and Planetary Sciences"=>4}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>42}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>3}, "Unspecified"=>{"Unspecified"=>2}, "Environmental Science"=>{"Environmental Science"=>12}}, "reader_count_by_country"=>{"Colombia"=>1, "United States"=>2, "Brazil"=>1, "Mexico"=>2}, "group_count"=>2}

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/644774"], "description"=>"<p>Four cross-shelf transects (I – IV, west to east) were used to examine scleractinian corals on a sub-set of oil/gas production platforms along each transect. Small squaresrepresent platforms. Large dots represent study platforms sampled for corals; see <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0030144#pone-0030144-t001\" target=\"_blank\">Table 1</a> for specific names, latitudes, longitudes, and lease area names of platforms. The transects ran generally SE from Matagorda Island, Texas; S from Port Arthur/Lake Sabine, LA; S from Timbalier Island, LA; and SW from Mobile, Alabama. The oval represents a region encompassing the Flower Garden Banks and 13 platforms sampled in an earlier study for coral community development and population genetics <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0030144#pone.0030144-Sammarco9\" target=\"_blank\">[25]</a>.</p>", "links"=>[], "tags"=>["platforms", "gulf"], "article_id"=>315266, "categories"=>["Inorganic Chemistry", "Ecology", "Genetics"], "users"=>["Paul W. Sammarco", "Daniel A. Brazeau", "James Sinclair"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0030144.g002", "stats"=>{"downloads"=>1, "page_views"=>2, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Map_of_the_oil_and_gas_platforms_in_the_northern_Gulf_of_Mexico_/315266", "title"=>"Map of the oil and gas platforms in the northern Gulf of Mexico.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-20 05:44:26"}
  • {"files"=>["https://ndownloader.figshare.com/files/645008"], "description"=>"<p>Note the general westerly current along the edge of the continental shelf in the vicinity of the Flower Garden Banks.</p>", "links"=>[], "tags"=>["gulf", "depicting", "examples"], "article_id"=>315493, "categories"=>["Inorganic Chemistry", "Ecology", "Genetics"], "users"=>["Paul W. Sammarco", "Daniel A. Brazeau", "James Sinclair"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0030144.g005", "stats"=>{"downloads"=>0, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Map_of_the_Gulf_of_Mexico_depicting_examples_of_general_known_currents_/315493", "title"=>"Map of the Gulf of Mexico, depicting examples of general known currents.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-20 05:45:41"}
  • {"files"=>["https://ndownloader.figshare.com/files/645250"], "description"=>"<p>(a) Genetic affinities on oil/gas platforms in the northern Gulf of Mexico along two transects – one south of Terrebonne Bay, LA (III), west of the Mississippi River mouth, and another south of Mobile, AL (IV), east of it. Platforms on the western side combined to provide sufficient sample size for comparison. Data analyzed via AFLPOP, with a log-likelihood value set at 0. (b) Same, but using a log-likelihood value of 1.0. Note how self-assignment arguments have diminished in magnitude, indicating much greater levels of cross-assignment, varying greatly from analysis performed with more liberal 0 setting. This indicates a broader dispersal capacity for <i>T. coccinea vs. M. decactis</i> (see <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0030144#pone-0030144-t004\" target=\"_blank\">Table 4</a>).</p>", "links"=>[], "tags"=>["affinities", "populations", "coral"], "article_id"=>315746, "categories"=>["Inorganic Chemistry", "Ecology", "Genetics"], "users"=>["Paul W. Sammarco", "Daniel A. Brazeau", "James Sinclair"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0030144.t005", "stats"=>{"downloads"=>8, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Genetic_affinities_in_populations_of_the_coral_Tubastraea_coccinea_/315746", "title"=>"Genetic affinities in populations of the coral <i>Tubastraea coccinea.</i>", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-20 05:46:58"}
  • {"files"=>["https://ndownloader.figshare.com/files/645103"], "description"=>"<p>Numbers are provided for two target coral species – <i>Madracis decactis</i> and <i>Tubastraea coccinea</i>. Data were combined in the Main Pass (MP) lease area in the case of the former species due to small sample sizes per platform. Inviable samples not included in analysis shown in italics.</p>", "links"=>[], "tags"=>["platforms", "sampled", "coral", "colonies", "gulf"], "article_id"=>315598, "categories"=>["Inorganic Chemistry", "Ecology", "Genetics"], "users"=>["Paul W. Sammarco", "Daniel A. Brazeau", "James Sinclair"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0030144.t002", "stats"=>{"downloads"=>0, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_A_list_of_platforms_sampled_and_number_of_coral_colonies_sampled_per_platform_in_each_transect_sector_across_the_northern_Gulf_of_Mexico_/315598", "title"=>"A list of platforms sampled and number of coral colonies sampled per platform in each transect/sector across the northern Gulf of Mexico.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-20 05:46:12"}
  • {"files"=>["https://ndownloader.figshare.com/files/645140"], "description"=>"<p>(Pre-selective and selective nucleotides are indicated in bold.).</p>", "links"=>[], "tags"=>["adapters", "primers", "aflp"], "article_id"=>315635, "categories"=>["Inorganic Chemistry", "Ecology", "Genetics"], "users"=>["Paul W. Sammarco", "Daniel A. Brazeau", "James Sinclair"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0030144.t003", "stats"=>{"downloads"=>1, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Sequences_of_the_adapters_and_primers_used_in_the_AFLP_protocol_/315635", "title"=>"Sequences of the adapters and primers used in the AFLP protocol.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-20 05:46:24"}
  • {"files"=>["https://ndownloader.figshare.com/files/645179"], "description"=>"<p>Platforms served as study sites for coral collection. Names of platforms shown, along with their latitudes and longitudes. Platforms are listed from north to south (by latitude); see <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0030144#pone-0030144-g002\" target=\"_blank\">Fig. 2</a> for graphic representation of location. Definitions of abbreviations designating offshore lease areas also shown.</p>", "links"=>[], "tags"=>["platforms", "studied", "gulf", "mexico", "cross-continental", "transects", "matagorda", "texas"], "article_id"=>315662, "categories"=>["Inorganic Chemistry", "Ecology", "Genetics"], "users"=>["Paul W. Sammarco", "Daniel A. Brazeau", "James Sinclair"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0030144.t001", "stats"=>{"downloads"=>1, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Details_of_the_oil_and_gas_platforms_studied_in_the_northern_Gulf_of_Mexico_along_four_cross_continental_shelf_transects_from_Matagorda_Island_Texas_to_Mobile_Alabama_/315662", "title"=>"Details of the oil and gas platforms studied in the northern Gulf of Mexico along four cross-continental shelf transects from Matagorda Island, Texas to Mobile, Alabama.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-20 05:46:34"}
  • {"files"=>["https://ndownloader.figshare.com/files/644862"], "description"=>"<p>Genetic affinity value (degree of relatedness) determined by the population genetics analytical software STRUCTURE. The reference population was the West Flower Garden Bank; <i>i.e.,</i> the population against which all other members of all other populations were compared The peak in the west implies that corals on platforms in that region were most likely derived from the Flower Garden Banks. Population differentiation is evident in the east, on either side of the Mississippi River mouth. The point-depression south of Terrebonne Bay, LA may represent a population drawn from outside of the northern Gulf of Mexico. Note: The orientation of the map has been reversed to east-to-west in order to facilitate viewing of the topography of the three-dimensional pattern generated by the data. This reveals fine-scale structure that would otherwise be hidden using a southerly view. The reader is viewing the region from the north, with east being on the left and west on the right.</p>", "links"=>[], "tags"=>["affinity", "coral", "populations", "platforms", "continental", "gulf"], "article_id"=>315350, "categories"=>["Inorganic Chemistry", "Ecology", "Genetics"], "users"=>["Paul W. Sammarco", "Daniel A. Brazeau", "James Sinclair"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0030144.g003", "stats"=>{"downloads"=>1, "page_views"=>9, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Genetic_affinity_in_Madracis_decactis_coral_populations_on_oil_and_gas_platforms_across_the_continental_shelf_in_the_northern_Gulf_of_Mexico_/315350", "title"=>"Genetic affinity in <i>Madracis decactis</i> coral populations on oil and gas platforms across the continental shelf in the northern Gulf of Mexico.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-20 05:44:51"}
  • {"files"=>["https://ndownloader.figshare.com/files/644643"], "description"=>"<p>Map of the Gulf of Mexico depicting the location of the Flower Garden Banks and their nearest neighboring major natural reefs, e.g., the Lobos-Tuxpan reef system, Campeche Bank reefs, Alacran, and the Florida Keys.</p>", "links"=>[], "tags"=>["gulf", "mexico", "depicting", "banks", "nearest", "lobos-tuxpan", "reef", "campeche", "florida"], "article_id"=>315123, "categories"=>["Inorganic Chemistry", "Ecology", "Genetics"], "users"=>["Paul W. Sammarco", "Daniel A. Brazeau", "James Sinclair"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0030144.g001", "stats"=>{"downloads"=>2, "page_views"=>295, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Map_of_the_Gulf_of_Mexico_depicting_the_location_of_the_Flower_Garden_Banks_and_their_nearest_neighboring_major_natural_reefs_e_g_the_Lobos_Tuxpan_reef_system_Campeche_Bank_reefs_Alacran_and_the_Florida_Keys_/315123", "title"=>"Map of the Gulf of Mexico depicting the location of the Flower Garden Banks and their nearest neighboring major natural reefs, e.g., the Lobos-Tuxpan reef system, Campeche Bank reefs, Alacran, and the Florida Keys.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-20 05:43:42"}
  • {"files"=>["https://ndownloader.figshare.com/files/645216"], "description"=>"<p>(a) Genetic affinities on oil/gas platforms in the northern Gulf of Mexico along two transects – one south of Terrebonne Bay, LA (III), west of the Mississippi River mouth, and another south of Mobile, AL (IV), east of it. Data were combined in the Main Pass (MP) lease area due to small sample sizes per platform, to facilitate comparison. Data analyzed via AFLPOP, with a log-likelihood value set at 0. Note extraordinarily levels of high self-assignment to home populations and lack of recognition of neighboring populations. An indication of geographic isolation of these coral populations and a possible indication of different larval sources. (b) Same, but data analyzed with a log-likelihood value set at 1. Resulting pattern almost identical to analysis performed with more liberal 0 setting.</p>", "links"=>[], "tags"=>["affinities", "populations", "coral"], "article_id"=>315708, "categories"=>["Inorganic Chemistry", "Ecology", "Genetics"], "users"=>["Paul W. Sammarco", "Daniel A. Brazeau", "James Sinclair"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0030144.t004", "stats"=>{"downloads"=>2, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Genetic_affinities_in_populations_of_the_coral_Madracis_decactis_/315708", "title"=>"Genetic affinities in populations of the coral <i>Madracis decactis.</i>", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-20 05:46:47"}
  • {"files"=>["https://ndownloader.figshare.com/files/644932"], "description"=>"<p>Genetic affinity value (degree of relatedness) determined by the population genetic analytical software STRUCTURE. The reference population was the West Flower Garden Bank; <i>i.e.,</i> the population against which all other members of all other populations were compared. The relative flatness of the curve indicates no major local larval source; i.e., it is unlikely that the FGB are a source of larvae for the region for this species. The steep decline in genetic affinity in the east indicates major population differences between the two sides of the Mississippi River. The point depression south of Terrebonne Bay indicates a population from a very different source than the rest of the western populations. Note: The orientation of the map has been reversed to east-to-west in order to facilitate viewing of the topography of the three-dimensional pattern generated by the data. This reveals fine-scale structure that would otherwise be hidden using a southerly view. The reader is viewing the region from the north, with east being on the left and west on the right.</p>", "links"=>[], "tags"=>["affinity", "coral", "populations", "platforms", "continental", "gulf"], "article_id"=>315421, "categories"=>["Inorganic Chemistry", "Ecology", "Genetics"], "users"=>["Paul W. Sammarco", "Daniel A. Brazeau", "James Sinclair"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0030144.g004", "stats"=>{"downloads"=>0, "page_views"=>2, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Genetic_affinity_in_Tubastraea_coccinea_coral_populations_on_oil_and_gas_platforms_across_the_continental_shelf_in_the_northern_Gulf_of_Mexico_/315421", "title"=>"Genetic affinity in <i>Tubastraea coccinea</i> coral populations on oil and gas platforms across the continental shelf in the northern Gulf of Mexico.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-20 05:45:15"}

PMC Usage Stats | Further Information

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Relative Metric

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