Synthetic Biology: Mapping the Scientific Landscape
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{"title"=>"Synthetic biology: Mapping the Scientific landscape", "type"=>"journal", "authors"=>[{"first_name"=>"Paul", "last_name"=>"Oldham", "scopus_author_id"=>"26533255500"}, {"first_name"=>"Stephen", "last_name"=>"Hall", "scopus_author_id"=>"57197506685"}, {"first_name"=>"Geoff", "last_name"=>"Burton", "scopus_author_id"=>"55193420200"}], "year"=>2012, "source"=>"PLoS ONE", "identifiers"=>{"sgr"=>"84859954411", "doi"=>"10.1371/journal.pone.0034368", "pui"=>"364662462", "pmid"=>"22539946", "scopus"=>"2-s2.0-84859954411", "issn"=>"19326203", "isbn"=>"1932-6203 (Electronic)\\r1932-6203 (Linking)"}, "id"=>"dbbdba3f-48ac-3b6b-81e6-7c1439622442", "abstract"=>"This article uses data from Thomson Reuters Web of Science to map and analyse the scientific landscape for synthetic biology. The article draws on recent advances in data visualisation and analytics with the aim of informing upcoming international policy debates on the governance of synthetic biology by the Subsidiary Body on Scientific, Technical and Technological Advice (SBSTTA) of the United Nations Convention on Biological Diversity. We use mapping techniques to identify how synthetic biology can best be understood and the range of institutions, researchers and funding agencies involved. Debates under the Convention are likely to focus on a possible moratorium on the field release of synthetic organisms, cells or genomes. Based on the empirical evidence we propose that guidance could be provided to funding agencies to respect the letter and spirit of the Convention on Biological Diversity in making research investments. Building on the recommendations of the United States Presidential Commission for the Study of Bioethical Issues we demonstrate that it is possible to promote independent and transparent monitoring of developments in synthetic biology using modern information tools. In particular, public and policy understanding and engagement with synthetic biology can be enhanced through the use of online interactive tools. As a step forward in this process we make existing data on the scientific literature on synthetic biology available in an online interactive workbook so that researchers, policy makers and civil society can explore the data and draw conclusions for themselves.", "link"=>"http://www.mendeley.com/research/synthetic-biology-mapping-scientific-landscape", "reader_count"=>264, "reader_count_by_academic_status"=>{"Unspecified"=>4, "Professor > Associate Professor"=>9, "Librarian"=>2, "Researcher"=>74, "Student > Doctoral Student"=>8, "Student > Ph. D. 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Student"=>58, "Student > Postgraduate"=>15, "Student > Master"=>32, "Other"=>14, "Student > Bachelor"=>31, "Lecturer"=>3, "Professor"=>14}, "reader_count_by_subject_area"=>{"Unspecified"=>10, "Agricultural and Biological Sciences"=>130, "Philosophy"=>3, "Arts and Humanities"=>2, "Business, Management and Accounting"=>7, "Chemical Engineering"=>1, "Chemistry"=>7, "Computer Science"=>16, "Earth and Planetary Sciences"=>2, "Economics, Econometrics and Finance"=>5, "Engineering"=>15, "Environmental Science"=>5, "Biochemistry, Genetics and Molecular Biology"=>17, "Nursing and Health Professions"=>1, "Medicine and Dentistry"=>11, "Design"=>3, "Neuroscience"=>1, "Pharmacology, Toxicology and Pharmaceutical Science"=>1, "Sports and Recreations"=>1, "Physics and Astronomy"=>7, "Psychology"=>1, "Social Sciences"=>17, "Immunology and Microbiology"=>1}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>11}, "Social Sciences"=>{"Social Sciences"=>17}, "Sports and Recreations"=>{"Sports and Recreations"=>1}, "Physics and Astronomy"=>{"Physics and Astronomy"=>7}, "Psychology"=>{"Psychology"=>1}, "Unspecified"=>{"Unspecified"=>10}, "Environmental Science"=>{"Environmental Science"=>5}, "Pharmacology, Toxicology and Pharmaceutical Science"=>{"Pharmacology, Toxicology and Pharmaceutical Science"=>1}, "Chemical Engineering"=>{"Chemical Engineering"=>1}, "Arts and Humanities"=>{"Arts and Humanities"=>2}, "Design"=>{"Design"=>3}, "Engineering"=>{"Engineering"=>15}, "Chemistry"=>{"Chemistry"=>7}, "Neuroscience"=>{"Neuroscience"=>1}, "Earth and Planetary Sciences"=>{"Earth and Planetary Sciences"=>2}, "Economics, Econometrics and Finance"=>{"Economics, Econometrics and Finance"=>5}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>130}, "Computer Science"=>{"Computer Science"=>16}, "Business, Management and Accounting"=>{"Business, Management and Accounting"=>7}, "Nursing and Health Professions"=>{"Nursing and Health Professions"=>1}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>17}, "Philosophy"=>{"Philosophy"=>3}}, "reader_count_by_country"=>{"Colombia"=>1, "United States"=>12, "United Kingdom"=>6, "Switzerland"=>1, "Spain"=>1, "Russia"=>1, "Sweden"=>2, "Netherlands"=>1, "Austria"=>1, "Belgium"=>2, "Norway"=>1, "Luxembourg"=>1, "China"=>1, "Brazil"=>3, "Mexico"=>5, "Australia"=>2, "France"=>4, "Chile"=>1, "Germany"=>5}, "group_count"=>19}

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/649942"], "description"=>"<p>This network map shows the relationships between 527 clusters of authors with publications on synthetic biology in <i>Web of Science</i>. Node size is based on the number of publications for a given author.</p>", "links"=>[], "tags"=>["molecular biology", "biotechnology", "ecology"], "article_id"=>320445, "categories"=>["Molecular Biology", "Biotechnology", "Ecology"], "users"=>["Paul Oldham", "Stephen Hall", "Geoff Burton"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0034368.g006", "stats"=>{"downloads"=>0, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Author_Network_/320445", "title"=>"Author Network.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-04-23 00:07:25"}
  • {"files"=>["https://ndownloader.figshare.com/files/650309"], "description"=>"<p>This figure compares the Thomson Reuters Web of Science journal subject categories for journal articles in the core landscape (orange) with those in the citing landscape (blue). Data was split on the subject category field to focus on individual journal subject categories.</p>", "links"=>[], "tags"=>["categories", "citing"], "article_id"=>320810, "categories"=>["Molecular Biology", "Biotechnology", "Ecology"], "users"=>["Paul Oldham", "Stephen Hall", "Geoff Burton"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0034368.g009", "stats"=>{"downloads"=>0, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Journal_Subject_Categories_Core_and_Citing_Landscapes_/320810", "title"=>"Journal Subject Categories Core and Citing Landscapes.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-04-23 00:13:30"}
  • {"files"=>["https://ndownloader.figshare.com/files/649795"], "description"=>"<p>This network map shows all author organizations with more than three publication records in <i>Web of Science</i> for the core landscape for synthetic biology. Where available this network map distinguishes organizations by locations (i.e. ETH) to distinguish groups. This is a Fruchterman-Reingold algorithm network representation in Gephi. The original dense representation was expanded and nodes were manually adjusted to prevent label overlaps and reduce irrelevant node to edge intersections.</p>", "links"=>[], "tags"=>["molecular biology", "biotechnology", "ecology"], "article_id"=>320298, "categories"=>["Molecular Biology", "Biotechnology", "Ecology"], "users"=>["Paul Oldham", "Stephen Hall", "Geoff Burton"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0034368.g005", "stats"=>{"downloads"=>2, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Organization_Network_/320298", "title"=>"Organization Network.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-04-23 00:04:58"}
  • {"files"=>["https://ndownloader.figshare.com/files/649455"], "description"=>"<p>A Fruchterman-Reingold representation in Gephi of the top 356 aggregated terms of 36,262 terms within <i>Web of Science</i> literature for synthetic biology based on titles, abstracts and author keywords following stemming. Node size is based on the number of records. Node positions have been adjusted to clarify labels.</p>", "links"=>[], "tags"=>["molecular biology", "biotechnology", "ecology"], "article_id"=>319949, "categories"=>["Molecular Biology", "Biotechnology", "Ecology"], "users"=>["Paul Oldham", "Stephen Hall", "Geoff Burton"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0034368.g002", "stats"=>{"downloads"=>1, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Key_Terms_Network_/319949", "title"=>"Key Terms Network.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-04-23 02:45:49"}
  • {"files"=>["https://ndownloader.figshare.com/files/649675"], "description"=>"<p>The figure ranks countries on the number of authors from a country appearing in publications in <i>Web of Science</i> linked to geocoded organizational information on their global distribution. Country rankings are base on data for 1160 records of 1255 records. This data can be explored in <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0034368#pone.0034368.s002\" target=\"_blank\">Workbook S1</a>.</p>", "links"=>[], "tags"=>["rankings"], "article_id"=>320175, "categories"=>["Molecular Biology", "Biotechnology", "Ecology"], "users"=>["Paul Oldham", "Stephen Hall", "Geoff Burton"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0034368.g004", "stats"=>{"downloads"=>0, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Country_Rankings_and_Organization_Distribution_Map_/320175", "title"=>"Country Rankings and Organization Distribution Map.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-04-23 00:02:55"}
  • {"files"=>["https://ndownloader.figshare.com/files/334030", "https://ndownloader.figshare.com/files/334070"], "description"=>"<div><p>This article uses data from Thomson Reuters <em>Web of Science</em> to map and analyse the scientific landscape for synthetic biology. The article draws on recent advances in data visualisation and analytics with the aim of informing upcoming international policy debates on the governance of synthetic biology by the Subsidiary Body on Scientific, Technical and Technological Advice (SBSTTA) of the United Nations Convention on Biological Diversity. We use mapping techniques to identify how synthetic biology can best be understood and the range of institutions, researchers and funding agencies involved. Debates under the Convention are likely to focus on a possible moratorium on the field release of synthetic organisms, cells or genomes. Based on the empirical evidence we propose that guidance could be provided to funding agencies to respect the letter and spirit of the Convention on Biological Diversity in making research investments. Building on the recommendations of the United States Presidential Commission for the Study of Bioethical Issues we demonstrate that it is possible to promote independent and transparent monitoring of developments in synthetic biology using modern information tools. In particular, public and policy understanding and engagement with synthetic biology can be enhanced through the use of online interactive tools. As a step forward in this process we make existing data on the scientific literature on synthetic biology available in an online interactive workbook so that researchers, policy makers and civil society can explore the data and draw conclusions for themselves.</p> </div>", "links"=>[], "tags"=>["synthetic"], "article_id"=>125972, "categories"=>["Molecular Biology", "Biotechnology", "Ecology"], "users"=>["Paul Oldham", "Stephen Hall", "Geoff Burton"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0034368.s001", "https://dx.doi.org/10.1371/journal.pone.0034368.s002"], "stats"=>{"downloads"=>20, "page_views"=>21, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Synthetic_Biology_Mapping_the_Scientific_Landscape/125972", "title"=>"Synthetic Biology: Mapping the Scientific Landscape", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2012-04-23 01:39:32"}
  • {"files"=>["https://ndownloader.figshare.com/files/650228"], "description"=>"<p>This figure shows the main articles cited by other authors inside the core landscape for synthetic biology. Data is based on counts of citations in the cited literature field of publications in the core landscape. The data does not refer to total citations for an author or article within the wider scientific literature. This data can be explored in <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0034368#pone.0034368.s002\" target=\"_blank\">Workbook S1</a>.</p>", "links"=>[], "tags"=>["articles"], "article_id"=>320725, "categories"=>["Molecular Biology", "Biotechnology", "Ecology"], "users"=>["Paul Oldham", "Stephen Hall", "Geoff Burton"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0034368.g008", "stats"=>{"downloads"=>1, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Key_Articles_in_the_Core_Landscape_/320725", "title"=>"Key Articles in the Core Landscape.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-04-23 00:12:05"}
  • {"files"=>["https://ndownloader.figshare.com/files/650134"], "description"=>"<p>This network map shows the network of authors with five or more publications on synthetic biology in <i>Web of Science</i>. Node size is based on the number of publications for a given author. Node position has been manually adjusted from <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0034368#pone-0034368-g005\" target=\"_blank\">Figure 5</a> to clarify labels.</p>", "links"=>[], "tags"=>["molecular biology", "biotechnology", "ecology"], "article_id"=>320630, "categories"=>["Molecular Biology", "Biotechnology", "Ecology"], "users"=>["Paul Oldham", "Stephen Hall", "Geoff Burton"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0034368.g007", "stats"=>{"downloads"=>0, "page_views"=>1, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Main_Authors_/320630", "title"=>"Main Authors.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-04-23 00:10:30"}
  • {"files"=>["https://ndownloader.figshare.com/files/650395"], "description"=>"<p>This map shows the network of relations between funding organizations appearing in 5 or more publications within <i>Web of Science</i> on synthetic biology. The figure was generated using the Force Atlas algorithm and the results were manually adjusted with the objective of preventing incorrect node to edge intersections. It should be noted that large nodes such as the US National Science Foundation may display intersections with unrelated edges.</p>", "links"=>[], "tags"=>["molecular biology", "biotechnology", "ecology"], "article_id"=>320891, "categories"=>["Molecular Biology", "Biotechnology", "Ecology"], "users"=>["Paul Oldham", "Stephen Hall", "Geoff Burton"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0034368.g010", "stats"=>{"downloads"=>1, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Top_Funding_Organizations_/320891", "title"=>"Top Funding Organizations.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-04-23 00:14:51"}
  • {"files"=>["https://ndownloader.figshare.com/files/649354"], "description"=>"<p>Data from <i>Web of Science</i> topic search for synthetic biology or synthetic genomics or synthetic genome or synthetic genomes in January 2012. Data for recent years may be partial due to lag times. This data can be explored in <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0034368#pone.0034368.s002\" target=\"_blank\">Workbook S1</a>.</p>", "links"=>[], "tags"=>["molecular biology", "biotechnology", "ecology"], "article_id"=>319850, "categories"=>["Molecular Biology", "Biotechnology", "Ecology"], "users"=>["Paul Oldham", "Stephen Hall", "Geoff Burton"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0034368.g001", "stats"=>{"downloads"=>0, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Publication_Trends_/319850", "title"=>"Publication Trends.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-04-23 02:44:10"}
  • {"files"=>["https://ndownloader.figshare.com/files/649543"], "description"=>"<p>A Fruchterman-Reingold representation in Gephi of the top aggregated terms for synthetic biology within <i>Web of Science</i> based on titles, abstracts and author keywords appearing in more than 20 or more records following stemming. Node size is based on the number of records. Node positions have been adjusted to clarify labels.</p>", "links"=>[], "tags"=>["molecular biology", "biotechnology", "ecology"], "article_id"=>320042, "categories"=>["Molecular Biology", "Biotechnology", "Ecology"], "users"=>["Paul Oldham", "Stephen Hall", "Geoff Burton"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0034368.g003", "stats"=>{"downloads"=>3, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Top_Terms_/320042", "title"=>"Top Terms.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-04-23 00:00:42"}

PMC Usage Stats | Further Information

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Relative Metric

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