From Late Miocene to Holocene: Processes of Differentiation within the Telestes Genus (Actinopterygii: Cyprinidae)
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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/338994", "https://ndownloader.figshare.com/files/339014", "https://ndownloader.figshare.com/files/339039", "https://ndownloader.figshare.com/files/339174", "https://ndownloader.figshare.com/files/339196", "https://ndownloader.figshare.com/files/339212"], "description"=>"<div><p>Investigating processes and timing of differentiation of organisms is critical in the understanding of the evolutionary mechanisms involved in microevolution, speciation, and macroevolution that generated the extant biodiversity. From this perspective, the <em>Telestes</em> genus is of special interest: the <em>Telestes</em> species have a wide distribution range across Europe (from the Danubian district to Mediterranean districts) and have not been prone to translocation. Molecular data (mtDNA: 1,232 bp including the entire Cyt <em>b</em> gene; nuclear genome: 11 microsatellites) were gathered from 34 populations of the <em>Telestes</em> genus, almost encompassing the entire geographic range. Using several phylogenetic and molecular dating methods interpreted in conjunction with paleoclimatic and geomorphologic evidence, we investigated the processes and timing of differentiation of the <em>Telestes</em> lineages. The observed genetic structure and diversity were largely congruent between mtDNA and microsatellites. The Messinian Salinity Crisis (Late Miocene) seems to have played a major role in the speciation processes of the genus. Focusing on <em>T. souffia</em>, a species occurring in the Danube and Rhone drainages, we were able to point out several specific events from the Pleistocene to the Holocene that have likely driven the differentiation and the historical demography of this taxon. This study provides support for an evolutionary history of dispersal and vicariance with unprecedented resolution for any freshwater fish in this region.</p> </div>", "links"=>[], "tags"=>["miocene", "processes", "differentiation", "genus"], "article_id"=>127018, "categories"=>["Evolutionary Biology"], "users"=>["Vincent Dubut", "Antoine Fouquet", "Adrien Voisin", "Caroline Costedoat", "Rémi Chappaz", "André Gilles"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0034423.s001", "https://dx.doi.org/10.1371/journal.pone.0034423.s002", "https://dx.doi.org/10.1371/journal.pone.0034423.s003", "https://dx.doi.org/10.1371/journal.pone.0034423.s004", "https://dx.doi.org/10.1371/journal.pone.0034423.s005", "https://dx.doi.org/10.1371/journal.pone.0034423.s006"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/From_Late_Miocene_to_Holocene_Processes_of_Differentiation_within_the_Telestes_Genus_Actinopterygii_Cyprinidae_/127018", "title"=>"From Late Miocene to Holocene: Processes of Differentiation within the <em>Telestes</em> Genus (Actinopterygii: Cyprinidae)", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2012-03-29 01:56:58"}
  • {"files"=>["https://ndownloader.figshare.com/files/661106"], "description"=>"<p>For samples ID, see <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0034423#pone-0034423-t001\" target=\"_blank\">Table 1</a>.</p>", "links"=>[], "tags"=>["sampled", "populations", "rhone", "french", "mediterranean"], "article_id"=>331588, "categories"=>["Evolutionary Biology"], "users"=>["Vincent Dubut", "Antoine Fouquet", "Adrien Voisin", "Caroline Costedoat", "Rémi Chappaz", "André Gilles"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0034423.g001"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Location_of_the_sampled_Telestes_populations_with_emphasize_on_the_Rhone_and_French_Mediterranean_basins_/331588", "title"=>"Location of the sampled <i>Telestes</i> populations with emphasize on the Rhone and French Mediterranean basins.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-03-29 00:26:28"}
  • {"files"=>["https://ndownloader.figshare.com/files/661196"], "description"=>"<p>A. Phylogenetic relationships among haplotypes of <i>Telestes</i> hypothesized from Bayesian analysis using 1232 bp of mtDNA. Posterior probability*100 are indicated, with “*” corresponding to pp = 0.1 while “-” are used to indicate pp<0.5. B. Bayesian time calibrated maximum clade credibility tree using relaxed clock with the same dataset but selected terminals representing major lineages. The calibration point used was the divergence between <i>T. pleurobipunctatus</i> and <i>T. alfiensis</i>. Posterior probabilities are indicated in red on the upper left of the nodes while the modes of the posterior distributions of the age of the nodes are indicated in Myr on the lower left in black. 95% CI are indicated with blue bars centered on the nodes.</p>", "links"=>[], "tags"=>["analyses", "mtdna"], "article_id"=>331683, "categories"=>["Evolutionary Biology"], "users"=>["Vincent Dubut", "Antoine Fouquet", "Adrien Voisin", "Caroline Costedoat", "Rémi Chappaz", "André Gilles"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0034423.g002"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Phylogenetic_analyses_of_mtDNA_sequences_/331683", "title"=>"Phylogenetic analyses of mtDNA sequences.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-03-29 00:28:03"}
  • {"files"=>["https://ndownloader.figshare.com/files/661323"], "description"=>"<p>Population samples ID detailed in haplotypes charts when necessary.</p>", "links"=>[], "tags"=>["mitochondrial"], "article_id"=>331812, "categories"=>["Evolutionary Biology"], "users"=>["Vincent Dubut", "Antoine Fouquet", "Adrien Voisin", "Caroline Costedoat", "Rémi Chappaz", "André Gilles"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0034423.g003"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Median_Joining_network_of_the_T_souffia_mitochondrial_haplotypes_/331812", "title"=>"Median-Joining network of the <i>T. souffia</i> mitochondrial haplotypes.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-03-29 00:30:12"}
  • {"files"=>["https://ndownloader.figshare.com/files/661446"], "description"=>"<p>Unrooted Maximum Likelihood tree based on microsatellites Dc distances (A) and FCA scatter plots for <i>T. s. souffia</i> population samples (B) and population samples representative of <i>Telestes</i> genus (C).</p>", "links"=>[], "tags"=>["multivariate", "analyses", "microsatellites"], "article_id"=>331938, "categories"=>["Evolutionary Biology"], "users"=>["Vincent Dubut", "Antoine Fouquet", "Adrien Voisin", "Caroline Costedoat", "Rémi Chappaz", "André Gilles"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0034423.g004"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Phylogenetic_and_multivariate_analyses_of_microsatellites_data_/331938", "title"=>"Phylogenetic and multivariate analyses of microsatellites data.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-03-29 00:32:18"}
  • {"files"=>["https://ndownloader.figshare.com/files/661543"], "description"=>"<p>Estimated population structure for population samples representative of <i>Telestes</i> genus (A) and <i>T. s. souffia</i> (B). “*” indicates K values retained from Δ<i>K </i><a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0034423#pone.0034423-Evanno1\" target=\"_blank\">[67]</a> and Δ<i>Fst </i><a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0034423#pone.0034423-Campana1\" target=\"_blank\">[64]</a> tests and when maximizing the posterior probability value <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0034423#pone.0034423-Pritchard1\" target=\"_blank\">[60]</a>. Between parentheses, the number of convergent runs associated to the structure displayed.</p>", "links"=>[], "tags"=>["clustering", "analyses", "microsatellites"], "article_id"=>332027, "categories"=>["Evolutionary Biology"], "users"=>["Vincent Dubut", "Antoine Fouquet", "Adrien Voisin", "Caroline Costedoat", "Rémi Chappaz", "André Gilles"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0034423.g005"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Bayesian_clustering_analyses_of_microsatellites_using_S_tructure_/332027", "title"=>"Bayesian clustering analyses of microsatellites using Structure.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-03-29 00:33:47"}
  • {"files"=>["https://ndownloader.figshare.com/files/661655"], "description"=>"<p>Pairwise relationship between Fst/(1−Fst) (genetic distance) vs. geographical distances (km) using microsatellites (A) and mtDNA (B) or between microsatellites vs. mtDNA genetic distances in the Rhone drainage. The correlation coefficient (R) and the P-value (P) obtained from Mantel test are reported for each bivariate analysis.</p>", "links"=>[], "tags"=>["relationships", "microsatellites", "geographical", "distances", "rhone"], "article_id"=>332138, "categories"=>["Evolutionary Biology"], "users"=>["Vincent Dubut", "Antoine Fouquet", "Adrien Voisin", "Caroline Costedoat", "Rémi Chappaz", "André Gilles"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0034423.g006"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Pairwise_relationships_between_mtDNA_microsatellites_and_geographical_distances_in_the_Rhone_drainage_/332138", "title"=>"Pairwise relationships between mtDNA, microsatellites and geographical distances in the Rhone drainage.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-03-29 00:35:38"}
  • {"files"=>["https://ndownloader.figshare.com/files/661721"], "description"=>"<p>The mean and 95% CI maximum interval of the TMRCA obtained for <i>T. souffia</i> lineages using mtDNA sequences and MIS are indicated. A. <i>T. souffia</i> (Rhone and Danube); B. <i>T. souffia</i> (Danube only); C. <i>T. s. agassii</i> 1 vs. <i>T. s. agassii</i> 2; D. <i>T. s. souffia</i>; E. <i>T. s. agassii</i> 1; F. <i>T. s. agassii</i> 2. Green “*”, means of TMRCA obtained from BEAST; red “*”, means of TMRCA obtained from the ρ statistic methodology; blue “*”, means of TMRCA obtained from BSP methodology.</p>", "links"=>[], "tags"=>["quaternary", "tmrca"], "article_id"=>332210, "categories"=>["Evolutionary Biology"], "users"=>["Vincent Dubut", "Antoine Fouquet", "Adrien Voisin", "Caroline Costedoat", "Rémi Chappaz", "André Gilles"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0034423.g007"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Time_frame_of_the_Quaternary_period_and_the_TMRCA_obtained_for_T_souffia_lineages_/332210", "title"=>"Time frame of the Quaternary period and the TMRCA obtained for <i>T. souffia</i> lineages.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-03-29 00:36:50"}
  • {"files"=>["https://ndownloader.figshare.com/files/661790"], "description"=>"a<p>Nodes of the MJ network used to estimate TMRCAs from ρ statistic (see <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0034423#pone-0034423-g003\" target=\"_blank\">Figure 3</a>).</p>", "links"=>[], "tags"=>["datations", "mtdna"], "article_id"=>332275, "categories"=>["Evolutionary Biology"], "users"=>["Vincent Dubut", "Antoine Fouquet", "Adrien Voisin", "Caroline Costedoat", "Rémi Chappaz", "André Gilles"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0034423.t002"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Molecular_datations_from_mtDNA_sequences_/332275", "title"=>"Molecular datations from mtDNA sequences.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-03-29 00:37:55"}
  • {"files"=>["https://ndownloader.figshare.com/files/661821"], "description"=>"a<p>see main text for abbreviations.</p>", "links"=>[], "tags"=>["locations"], "article_id"=>332310, "categories"=>["Evolutionary Biology"], "users"=>["Vincent Dubut", "Antoine Fouquet", "Adrien Voisin", "Caroline Costedoat", "Rémi Chappaz", "André Gilles"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0034423.t001"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Sampled_Telestes_taxa_population_locations_and_sample_sizes_/332310", "title"=>"Sampled <i>Telestes</i> taxa, population locations and sample sizes.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-03-29 00:38:30"}

PMC Usage Stats | Further Information

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Relative Metric

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