The Origin of the ‘Mycoplasma mycoides Cluster’ Coincides with Domestication of Ruminants
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{"title"=>"The origin of the 'mycoplasma mycoides cluster' coincides with domestication of ruminants", "type"=>"journal", "authors"=>[{"first_name"=>"Anne", "last_name"=>"Fischer", "scopus_author_id"=>"23666781700"}, {"first_name"=>"Beth", "last_name"=>"Shapiro", "scopus_author_id"=>"7402300615"}, {"first_name"=>"Cecilia", "last_name"=>"Muriuki", "scopus_author_id"=>"6508380136"}, {"first_name"=>"Martin", "last_name"=>"Heller", "scopus_author_id"=>"16039530800"}, {"first_name"=>"Christiane", "last_name"=>"Schnee", "scopus_author_id"=>"6602384139"}, {"first_name"=>"Erik", "last_name"=>"Bongcam-Rudloff", "scopus_author_id"=>"6603209912"}, {"first_name"=>"Edy M.", "last_name"=>"Vilei", "scopus_author_id"=>"6601920144"}, {"first_name"=>"Joachim", "last_name"=>"Frey", "scopus_author_id"=>"7202811675"}, {"first_name"=>"Joerg", "last_name"=>"Jores", "scopus_author_id"=>"6602626380"}], "year"=>2012, "source"=>"PLoS ONE", "identifiers"=>{"issn"=>"19326203", "scopus"=>"2-s2.0-84860479162", "sgr"=>"84860479162", "pui"=>"364720933", "isbn"=>"1932-6203", "pmid"=>"22558362", "doi"=>"10.1371/journal.pone.0036150"}, "id"=>"34637d94-3380-368e-9b73-5bc536e3c19e", "abstract"=>"The 'Mycoplasma mycoides cluster' comprises the ruminant pathogens Mycoplasma mycoides subsp. mycoides the causative agent of contagious bovine pleuropneumonia (CBPP), Mycoplasma capricolum subsp. capripneumoniae the agent of contagious caprine pleuropneumonia (CCPP), Mycoplasma capricolum subsp. capricolum, Mycoplasma leachii and Mycoplasma mycoides subsp. capri. CBPP and CCPP are major livestock diseases and impact the agricultural sector especially in developing countries through reduced food-supply and international trade restrictions. In addition, these diseases are a threat to disease-free countries. We used a multilocus sequence typing (MLST) approach to gain insights into the demographic history of and phylogenetic relationships among the members of the 'M. mycoides cluster'. We collected partial sequences from seven housekeeping genes representing a total of 3,816 base pairs from 118 strains within this cluster, and five strains isolated from wild Caprinae. Strikingly, the origin of the 'M. mycoides cluster' dates to about 10,000 years ago, suggesting that the establishment and spread of the cluster coincided with livestock domestication. In addition, we show that hybridization and recombination may be important factors in the evolutionary history of the cluster.", "link"=>"http://www.mendeley.com/research/origin-mycoplasma-mycoides-cluster-coincides-domestication-ruminants", "reader_count"=>42, "reader_count_by_academic_status"=>{"Researcher"=>8, "Student > Doctoral Student"=>1, "Student > Ph. D. Student"=>13, "Student > Postgraduate"=>6, "Student > Master"=>9, "Other"=>1, "Student > Bachelor"=>1, "Professor"=>3}, "reader_count_by_user_role"=>{"Researcher"=>8, "Student > Doctoral Student"=>1, "Student > Ph. D. Student"=>13, "Student > Postgraduate"=>6, "Student > Master"=>9, "Other"=>1, "Student > Bachelor"=>1, "Professor"=>3}, "reader_count_by_subject_area"=>{"Unspecified"=>2, "Engineering"=>1, "Environmental Science"=>2, "Biochemistry, Genetics and Molecular Biology"=>2, "Agricultural and Biological Sciences"=>26, "Medicine and Dentistry"=>5, "Veterinary Science and Veterinary Medicine"=>3, "Immunology and Microbiology"=>1}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>1}, "Medicine and Dentistry"=>{"Medicine and Dentistry"=>5}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>26}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>2}, "Unspecified"=>{"Unspecified"=>2}, "Environmental Science"=>{"Environmental Science"=>2}, "Veterinary Science and Veterinary Medicine"=>{"Veterinary Science and Veterinary Medicine"=>3}}, "reader_count_by_country"=>{"Sweden"=>1, "Kenya"=>2, "Chile"=>1, "Germany"=>2}, "group_count"=>0}

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/645679"], "description"=>"<p>Bayesian posterior probabilities are provided at the major nodes in the tree as a measure of support for clustering of the distinct strains. The scale is given in years before present.</p>", "links"=>[], "tags"=>["resulting", "concatenated"], "article_id"=>316168, "categories"=>["Biological Sciences", "Biochemistry", "Genetics", "Microbiology", "Evolutionary Biology"], "users"=>["Anne Fischer", "Beth Shapiro", "Cecilia Muriuki", "Martin Heller", "Christiane Schnee", "Erik Bongcam-Rudloff", "Edy M. Vilei", "Joachim Frey", "Joerg Jores"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036150.g002", "stats"=>{"downloads"=>1, "page_views"=>16, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Maximum_credibility_tree_resulting_from_the_BEAST_analysis_of_the_concatenated_sequence_alignment_as_described_in_the_main_text_/316168", "title"=>"Maximum credibility tree resulting from the BEAST analysis of the concatenated sequence alignment, as described in the main text.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-04-27 01:42:48"}
  • {"files"=>["https://ndownloader.figshare.com/files/645761"], "description"=>"<p>θ<sub>w</sub> is a measure of genetic diversity, Tajima's D and Fu's Fs are two summaries of allele frequencies.</p><p><i>Mmc</i> - <i>Mycoplasma mycoides</i> subsp. <i>capri</i>, <i>M. c.</i> - <i>Mycoplasma capricolum</i> (both subsp.), <i>Mmm</i> - <i>Mycoplasma mycoides</i> subsp. <i>mycoides</i>, <i>M.</i> sp. - unassigned <i>Mycoplasma</i> species,</p>*<p>Significant values p<0.05.</p>", "links"=>[], "tags"=>["genes"], "article_id"=>316249, "categories"=>["Biological Sciences", "Biochemistry", "Genetics", "Microbiology", "Evolutionary Biology"], "users"=>["Anne Fischer", "Beth Shapiro", "Cecilia Muriuki", "Martin Heller", "Christiane Schnee", "Erik Bongcam-Rudloff", "Edy M. Vilei", "Joachim Frey", "Joerg Jores"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036150.t001", "stats"=>{"downloads"=>3, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Summary_statistics_for_seven_genes_in_five_sub_populations_/316249", "title"=>"Summary statistics for seven genes in five (sub)populations.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-04-27 01:44:09"}
  • {"files"=>["https://ndownloader.figshare.com/files/645805"], "description"=>"<p><i>Mmc</i>-<i>Mycoplasma mycoides</i> capri,</p>*<p>Significant values p<0.05.</p>", "links"=>[], "tags"=>["recombination", "estimates"], "article_id"=>316288, "categories"=>["Biological Sciences", "Biochemistry", "Genetics", "Microbiology", "Evolutionary Biology"], "users"=>["Anne Fischer", "Beth Shapiro", "Cecilia Muriuki", "Martin Heller", "Christiane Schnee", "Erik Bongcam-Rudloff", "Edy M. Vilei", "Joachim Frey", "Joerg Jores"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036150.t002", "stats"=>{"downloads"=>8, "page_views"=>1, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Population_recombination_rate_estimates_961_for_three_sub_populations_/316288", "title"=>"Population recombination rate estimates (ρ) for three (sub)populations.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-04-27 01:44:48"}
  • {"files"=>["https://ndownloader.figshare.com/files/645602"], "description"=>"<p>The 4 populations revealed by the STRUCTURE analysis using the linkage model and 7 housekeeping sequences are displayed on the top of the figure and marked with different colours. The ancestral parts of each strain are displayed in vertical lines. Subpopulations of the <i>M. capricolum</i>/<i>M. leachii</i> population are displayed below.</p>", "links"=>[], "tags"=>["phylogenetic", "non-species", "assigned"], "article_id"=>316083, "categories"=>["Biological Sciences", "Biochemistry", "Genetics", "Microbiology", "Evolutionary Biology"], "users"=>["Anne Fischer", "Beth Shapiro", "Cecilia Muriuki", "Martin Heller", "Christiane Schnee", "Erik Bongcam-Rudloff", "Edy M. Vilei", "Joachim Frey", "Joerg Jores"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036150.g001", "stats"=>{"downloads"=>0, "page_views"=>2, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Population_structure_and_phylogenetic_relationship_of_the_M_mycoides_cluster_and_five_non_species_assigned_Mycoplasma_strains_/316083", "title"=>"Population structure and phylogenetic relationship of the ‘<i>M. mycoides</i> cluster’ and five non-species assigned <i>Mycoplasma</i> strains.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-04-27 01:41:23"}
  • {"files"=>["https://ndownloader.figshare.com/files/332863", "https://ndownloader.figshare.com/files/332897", "https://ndownloader.figshare.com/files/332938", "https://ndownloader.figshare.com/files/332981", "https://ndownloader.figshare.com/files/333028", "https://ndownloader.figshare.com/files/333170", "https://ndownloader.figshare.com/files/333234"], "description"=>"<div><p>The ‘<em>Mycoplasma mycoides</em> cluster’ comprises the ruminant pathogens <em>Mycoplasma mycoides</em> subsp. <em>mycoides</em> the causative agent of contagious bovine pleuropneumonia (CBPP), <em>Mycoplasma capricolum</em> subsp. <em>capripneumoniae</em> the agent of contagious caprine pleuropneumonia (CCPP), <em>Mycoplasma capricolum</em> subsp. <em>capricolum</em>, <em>Mycoplasma leachii</em> and <em>Mycoplasma mycoides</em> subsp. <em>capri</em>. CBPP and CCPP are major livestock diseases and impact the agricultural sector especially in developing countries through reduced food-supply and international trade restrictions. In addition, these diseases are a threat to disease-free countries. We used a multilocus sequence typing (MLST) approach to gain insights into the demographic history of and phylogenetic relationships among the members of the ‘<em>M. mycoides</em> cluster’. We collected partial sequences from seven housekeeping genes representing a total of 3,816 base pairs from 118 strains within this cluster, and five strains isolated from wild <em>Caprinae</em>. Strikingly, the origin of the ‘<em>M. mycoides</em> cluster’ dates to about 10,000 years ago, suggesting that the establishment and spread of the cluster coincided with livestock domestication. In addition, we show that hybridization and recombination may be important factors in the evolutionary history of the cluster.</p> </div>", "links"=>[], "tags"=>["coincides", "domestication", "ruminants"], "article_id"=>125726, "categories"=>["Biological Sciences", "Biochemistry", "Genetics", "Microbiology", "Evolutionary Biology"], "users"=>["Anne Fischer", "Beth Shapiro", "Cecilia Muriuki", "Martin Heller", "Christiane Schnee", "Erik Bongcam-Rudloff", "Edy M. Vilei", "Joachim Frey", "Joerg Jores"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0036150.s001", "https://dx.doi.org/10.1371/journal.pone.0036150.s002", "https://dx.doi.org/10.1371/journal.pone.0036150.s003", "https://dx.doi.org/10.1371/journal.pone.0036150.s004", "https://dx.doi.org/10.1371/journal.pone.0036150.s005", "https://dx.doi.org/10.1371/journal.pone.0036150.s006", "https://dx.doi.org/10.1371/journal.pone.0036150.s007"], "stats"=>{"downloads"=>24, "page_views"=>49, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/The_Origin_of_the_Mycoplasma_mycoides_Cluster_Coincides_with_Domestication_of_Ruminants/125726", "title"=>"The Origin of the ‘<em>Mycoplasma mycoides</em> Cluster’ Coincides with Domestication of Ruminants", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2012-04-27 01:35:26"}

PMC Usage Stats | Further Information

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  • {"unique-ip"=>"16", "full-text"=>"12", "pdf"=>"7", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"3", "supp-data"=>"2", "cited-by"=>"0", "year"=>"2014", "month"=>"10"}
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Relative Metric

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