Variable Carbon Catabolism among Salmonella enterica Serovar Typhi Isolates
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{"title"=>"Variable carbon catabolism among salmonella enterica serovar typhi isolates", "type"=>"journal", "authors"=>[{"first_name"=>"Lay Ching", "last_name"=>"Chai", "scopus_author_id"=>"25654632500"}, {"first_name"=>"Boon Hong", "last_name"=>"Kong", "scopus_author_id"=>"57114384700"}, {"first_name"=>"Omar Ismail", "last_name"=>"Elemfareji", "scopus_author_id"=>"55228709500"}, {"first_name"=>"Kwai Lin", "last_name"=>"Thong", "scopus_author_id"=>"35390355100"}], "year"=>2012, "source"=>"PLoS ONE", "identifiers"=>{"sgr"=>"84861469892", "doi"=>"10.1371/journal.pone.0036201", "pui"=>"364882987", "pmid"=>"22662115", "scopus"=>"2-s2.0-84861469892", "issn"=>"19326203", "isbn"=>"1932-6203"}, "id"=>"85128e76-614e-33ef-b422-9732c4394d1d", "abstract"=>"BACKGROUND: Salmonella enterica serovar Typhi (S. Typhi) is strictly a human intracellular pathogen. It causes acute systemic (typhoid fever) and chronic infections that result in long-term asymptomatic human carriage. S. Typhi displays diverse disease manifestations in human infection and exhibits high clonality. The principal factors underlying the unique lifestyle of S. Typhi in its human host during acute and chronic infections remain largely unknown and are therefore the main objective of this study.\\n\\nMETHODOLOGY/PRINCIPAL FINDINGS: To obtain insight into the intracellular lifestyle of S. Typhi, a high-throughput phenotypic microarray was employed to characterise the catabolic capacity of 190 carbon sources in S. Typhi strains. The success of this study lies in the carefully selected library of S. Typhi strains, including strains from two geographically distinct areas of typhoid endemicity, an asymptomatic human carrier, clinical stools and blood samples and sewage-contaminated rivers. An extremely low carbon catabolic capacity (27% of 190 carbon substrates) was observed among the strains. The carbon catabolic profiles appeared to suggest that S. Typhi strains survived well on carbon subtrates that are found abundantly in the human body but not in others. The strains could not utilise plant-associated carbon substrates. In addition, α-glycerolphosphate, glycerol, L-serine, pyruvate and lactate served as better carbon sources to monosaccharides in the S. Typhi strains tested.\\n\\nCONCLUSION: The carbon catabolic profiles suggest that S. Typhi could survive and persist well in the nutrient depleted metabolic niches in the human host but not in the environment outside of the host. These findings serve as caveats for future studies to understand how carbon catabolism relates to the pathogenesis and transmission of this pathogen.", "link"=>"http://www.mendeley.com/research/variable-carbon-catabolism-among-salmonella-enterica-serovar-typhi-isolates", "reader_count"=>26, "reader_count_by_academic_status"=>{"Unspecified"=>2, "Researcher"=>5, "Student > Doctoral Student"=>2, "Student > Ph. D. Student"=>8, "Student > Postgraduate"=>1, "Student > Master"=>4, "Student > Bachelor"=>3, "Professor"=>1}, "reader_count_by_user_role"=>{"Unspecified"=>2, "Researcher"=>5, "Student > Doctoral Student"=>2, "Student > Ph. D. Student"=>8, "Student > Postgraduate"=>1, "Student > Master"=>4, "Student > Bachelor"=>3, "Professor"=>1}, "reader_count_by_subject_area"=>{"Engineering"=>2, "Unspecified"=>2, "Agricultural and Biological Sciences"=>17, "Medicine and Dentistry"=>1, "Business, Management and Accounting"=>1, "Immunology and Microbiology"=>2, "Biochemistry, Genetics and Molecular Biology"=>1}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>2}, "Medicine and Dentistry"=>{"Medicine and Dentistry"=>1}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>2}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>17}, "Business, Management and Accounting"=>{"Business, Management and Accounting"=>1}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>1}, "Unspecified"=>{"Unspecified"=>2}}, "reader_count_by_country"=>{"Greece"=>1, "Australia"=>1, "Switzerland"=>1}, "group_count"=>1}

Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/328225", "https://ndownloader.figshare.com/files/328265"], "description"=>"<div><h3>Background</h3><p><em>Salmonella enterica</em> serovar Typhi (<em>S.</em> Typhi) is strictly a human intracellular pathogen. It causes acute systemic (typhoid fever) and chronic infections that result in long-term asymptomatic human carriage. <em>S.</em> Typhi displays diverse disease manifestations in human infection and exhibits high clonality. The principal factors underlying the unique lifestyle of <em>S.</em> Typhi in its human host during acute and chronic infections remain largely unknown and are therefore the main objective of this study.</p> <h3>Methodology/Principal Findings</h3><p>To obtain insight into the intracellular lifestyle of <em>S.</em> Typhi, a high-throughput phenotypic microarray was employed to characterise the catabolic capacity of 190 carbon sources in <em>S.</em> Typhi strains. The success of this study lies in the carefully selected library of <em>S.</em> Typhi strains, including strains from two geographically distinct areas oftyphoid endemicity, an asymptomatic human carrier, clinical stools and blood samples and sewage-contaminated rivers. An extremely low carbon catabolic capacity (27% of 190 carbon substrates) was observed among the strains. The carbon catabolic profiles appeared to suggest that <em>S.</em> Typhi strains survived well on carbon subtrates that are found abundantly in the human body but not in others. The strains could not utilise plant-associated carbon substrates. In addition, α-glycerolphosphate, glycerol, L-serine, pyruvate and lactate served as better carbon sources to monosaccharides in the <em>S.</em> Typhi strains tested.</p> <h3>Conclusion</h3><p>The carbon catabolic profiles suggest that <em>S.</em> Typhi could survive and persist well in the nutrient depleted metabolic niches in the human host but not in the environment outside of the host. These findings serve as caveats for future studies to understand how carbon catabolism relates to the pathogenesis and transmission of this pathogen.</p> </div>", "links"=>[], "tags"=>["carbon", "catabolism", "serovar", "typhi", "isolates"], "article_id"=>124798, "categories"=>["Microbiology", "Cancer", "Biochemistry", "Developmental Biology"], "users"=>["Lay Ching Chai", "Boon Hong Kong", "Omar Ismail Elemfareji", "Kwai Lin Thong"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0036201.s001", "https://dx.doi.org/10.1371/journal.pone.0036201.s002"], "stats"=>{"downloads"=>1, "page_views"=>9, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Variable_Carbon_Catabolism_among_Salmonella_enterica_Serovar_Typhi_Isolates/124798", "title"=>"Variable Carbon Catabolism among <em>Salmonella enterica</em> Serovar Typhi Isolates", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2012-05-25 01:19:58"}
  • {"files"=>["https://ndownloader.figshare.com/files/633136"], "description"=>"*<p>Catabolism activity = No. of carbon sources utilized × mean of catabolism rate.</p>†<p>Catabolism activity between strains of blood origin and stool origin were significantly different at P-value of 0.013 (exclude the environmental strain VC1681) and 0.029 (include strain VC1681).</p>", "links"=>[], "tags"=>["catabolic", "serovar", "typhi", "strains", "stool", "sewage-contaminated"], "article_id"=>303624, "categories"=>["Microbiology", "Biochemistry", "Developmental Biology", "Infectious Diseases"], "users"=>["Lay Ching Chai", "Boon Hong Kong", "Omar Ismail Elemfareji", "Kwai Lin Thong"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036201.t003", "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Carbon_catabolic_activity_among_Salmonella_enterica_serovar_Typhi_strains_isolated_from_human_blood_stool_and_sewage_contaminated_water_/303624", "title"=>"Carbon catabolic activity among <i>Salmonella enterica</i> serovar Typhi strains isolated from human blood, stool and sewage-contaminated water.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-05-25 01:00:24"}
  • {"files"=>["https://ndownloader.figshare.com/files/632828"], "description"=>"<p>The dendrogram and catabolic profiles show 52 active carbon substrates catabolised by the eight strains of <i>S.</i> Typhi tested. The cluster analysis was performed with simple matching similarity based on the catabolic profile of 190 carbon substrates and the dendrogram was built with unweighted paired group of arithmetic mean (UPGMA).</p>", "links"=>[], "tags"=>["carbon", "catabolism", "serovar", "typhi"], "article_id"=>303317, "categories"=>["Microbiology", "Biochemistry", "Developmental Biology", "Infectious Diseases"], "users"=>["Lay Ching Chai", "Boon Hong Kong", "Omar Ismail Elemfareji", "Kwai Lin Thong"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036201.g001", "stats"=>{"downloads"=>0, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Cluster_analysis_based_on_the_carbon_catabolism_profile_of_the_eight_Salmonella_enterica_serovar_Typhi_strains_/303317", "title"=>"Cluster analysis based on the carbon catabolism profile of the eight <i>Salmonella enterica</i> serovar Typhi strains.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-05-25 00:55:17"}
  • {"files"=>["https://ndownloader.figshare.com/files/633099"], "description"=>"*<p>Number of substrate catabolised by all strains or some strains or not able to be catabolised by any strains (percentage of substrate catabolised by all strains or some strains or not able to be catabolised by any strains).</p>", "links"=>[], "tags"=>["190", "carbon", "substrates", "serovar", "typhi"], "article_id"=>303590, "categories"=>["Microbiology", "Biochemistry", "Developmental Biology", "Infectious Diseases"], "users"=>["Lay Ching Chai", "Boon Hong Kong", "Omar Ismail Elemfareji", "Kwai Lin Thong"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036201.t002", "stats"=>{"downloads"=>1, "page_views"=>2, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Catabolism_of_190_carbon_substrates_by_Salmonella_enterica_serovar_Typhi_strains_/303590", "title"=>"Catabolism of 190 carbon substrates by <i>Salmonella enterica</i> serovar Typhi strains.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-05-25 00:59:50"}
  • {"files"=>["https://ndownloader.figshare.com/files/633160"], "description"=>"*<p>Virulence genes profiles among 8 <i>S.</i> Typhi strains tested.</p><p>(V) : <i>agf</i>A-<i>agf</i>C-<i>cdt</i>B-<i>inv</i>A-<i>iro</i>N-<i>lpf</i>A-<i>lpf</i>C-<i>mgt</i>C-<i>mis</i>L-<i>orf</i>L-<i>pef</i>A-<i>pip</i>D-<i>prg</i>H-<i>sef</i>C-<i>sef</i>D-<i>sif</i>A-<i>sit</i>C-<i>sop</i>B-<i>sop</i>E-<i>spi</i>C-<i>spv</i>B-<i>spv</i>C.</p><p>(V1): <i>agf</i>A-<i>agf</i>C-<i>cdt</i>B-<i>inv</i>A-<i>iro</i>N- -<i>mgt</i>C-<i>mis</i>L-<i>orf</i>L- -<i>pip</i>D-<i>prg</i>H-<i>sef</i>C-<i>sef</i>D-<i>sif</i>A-<i>sit</i>C-<i>sop</i>B-<i>sop</i>E-<i>spi</i>C-.</p><p>(V2): <i>agf</i>A-<i>agf</i>C-<i>cdt</i>B-<i>inv</i>A-<i>iro</i>N- -<i>mgt</i>C-<i>mis</i>L-<i>orf</i>L- -<i>pip</i>D-<i>prg</i>H-<i>sef</i>C- -<i>sif</i>A-<i>sit</i>C-<i>sop</i>B-<i>sop</i>E-<i>spi</i>C-.</p><p>(V3): <i>agf</i>A-<i>agf</i>C-<i>cdt</i>B-<i>inv</i>A-<i>iro</i>N- -<i>mgt</i>C-<i>mis</i>L-<i>orf</i>L- -<i>pip</i>D-<i>prg</i>H- -<i>sif</i>A-<i>sit</i>C-<i>sop</i>B-<i>sop</i>E-<i>spi</i>C-.</p><p>(V4): <i>agf</i>A-<i>agf</i>C-<i>cdt</i>B-<i>inv</i>A-<i>iro</i>N- -<i>mis</i>L-<i>orf</i>L- -<i>pip</i>D-<i>prg</i>H- -<i>sif</i>A-<i>sit</i>C-<i>sop</i>B-<i>sop</i>E-<i>spi</i>C-.</p><p>(V5): <i>agf</i>A- -<i>cdt</i>B-<i>inv</i>A-<i>iro</i>N- -<i>mgt</i>C-<i>mis</i>L-<i>orf</i>L- -<i>pip</i>D-<i>prg</i>H-<i>sef</i>C- -<i>sif</i>A-<i>sit</i>C-<i>sop</i>B-<i>sop</i>E-<i>spi</i>C-.</p>", "links"=>[], "tags"=>["serovar", "typhi", "strains"], "article_id"=>303650, "categories"=>["Microbiology", "Biochemistry", "Developmental Biology", "Infectious Diseases"], "users"=>["Lay Ching Chai", "Boon Hong Kong", "Omar Ismail Elemfareji", "Kwai Lin Thong"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036201.t001", "stats"=>{"downloads"=>0, "page_views"=>1, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Salmonella_enterica_serovar_Typhi_strains_used_in_this_study_/303650", "title"=>"<i>Salmonella enterica</i> serovar Typhi strains used in this study.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-05-25 01:00:50"}
  • {"files"=>["https://ndownloader.figshare.com/files/632983"], "description"=>"<p>A three-dimensional principle component analysis (PCA) of the eight <i>S.</i> Typhi strains was calculated from the corrected average area under the bacterial growth curve. For each carbon well, the average area under the bacterial growth curve was corrected to zero if the T<sub>max</sub>–T<sub>min</sub> value was lesser than the threshold value of 50.</p>", "links"=>[], "tags"=>["serovar", "typhi"], "article_id"=>303487, "categories"=>["Microbiology", "Biochemistry", "Developmental Biology", "Infectious Diseases"], "users"=>["Lay Ching Chai", "Boon Hong Kong", "Omar Ismail Elemfareji", "Kwai Lin Thong"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036201.g002", "stats"=>{"downloads"=>1, "page_views"=>19, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Three_dimensional_principle_component_analysis_PCA_of_eight_Salmonella_enterica_serovar_Typhi_strains_/303487", "title"=>"Three-dimensional principle component analysis (PCA) of eight <i>Salmonella enterica</i> serovar Typhi strains.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-05-25 00:58:07"}

PMC Usage Stats | Further Information

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Relative Metric

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