Integration of Two Diploid Potato Linkage Maps with the Potato Genome Sequence
Publication Date
April 27, 2012
Journal
PLOS ONE
Authors
Kimberly J. Felcher, Joseph J. Coombs, Alicia N. Massa, Candice N. Hansey, et al
Volume
7
Issue
4
Pages
e36347
DOI
https://dx.plos.org/10.1371/journal.pone.0036347
Publisher URL
http://journals.plos.org/plosone/article?id=10.1371%2Fjournal.pone.0036347
PubMed
http://www.ncbi.nlm.nih.gov/pubmed/22558443
PubMed Central
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3338666
Europe PMC
http://europepmc.org/abstract/MED/22558443
Web of Science
000305336000193
Scopus
84860442706
Mendeley
http://www.mendeley.com/research/integration-two-diploid-potato-linkage-maps-potato-genome-sequence
Events
Loading … Spinner

Mendeley | Further Information

{"title"=>"Integration of two diploid potato linkage maps with the potato genome sequence", "type"=>"journal", "authors"=>[{"first_name"=>"Kimberly J.", "last_name"=>"Felcher", "scopus_author_id"=>"7801498515"}, {"first_name"=>"Joseph J.", "last_name"=>"Coombs", "scopus_author_id"=>"7004370584"}, {"first_name"=>"Alicia N.", "last_name"=>"Massa", "scopus_author_id"=>"7005085848"}, {"first_name"=>"Candice N.", "last_name"=>"Hansey", "scopus_author_id"=>"55621571300"}, {"first_name"=>"John P.", "last_name"=>"Hamilton", "scopus_author_id"=>"8955405700"}, {"first_name"=>"Richard E.", "last_name"=>"Veilleux", "scopus_author_id"=>"7004595949"}, {"first_name"=>"C. Robin", "last_name"=>"Buell", "scopus_author_id"=>"7003436847"}, {"first_name"=>"David S.", "last_name"=>"Douches", "scopus_author_id"=>"7004683602"}], "year"=>2012, "source"=>"PLoS ONE", "identifiers"=>{"pmid"=>"22558443", "doi"=>"10.1371/journal.pone.0036347", "sgr"=>"84860442706", "isbn"=>"1932-6203 (Electronic)\\n1932-6203 (Linking)", "scopus"=>"2-s2.0-84860442706", "issn"=>"19326203", "pui"=>"364720985"}, "id"=>"3edf9f74-7fea-3577-a705-3a38dd9400ba", "abstract"=>"To facilitate genome-guided breeding in potato, we developed an 8303 Single Nucleotide Polymorphism (SNP) marker array using potato genome and transcriptome resources. To validate the Infinium 8303 Potato Array, we developed linkage maps from two diploid populations (DRH and D84) and compared these maps with the assembled potato genome sequence. Both populations used the doubled monoploid reference genotype DM1-3 516 R44 as the female parent but had different heterozygous diploid male parents (RH89-039-16 and 84SD22). Over 4,400 markers were mapped (1,960 in DRH and 2,454 in D84, 787 in common) resulting in map sizes of 965 (DRH) and 792 (D84) cM, covering 87% (DRH) and 88% (D84) of genome sequence length. Of the mapped markers, 33.5% were in candidate genes selected for the array, 4.5% were markers from existing genetic maps, and 61% were selected based on distribution across the genome. Markers with distorted segregation ratios occurred in blocks in both linkage maps, accounting for 4% (DRH) and 9% (D84) of mapped markers. Markers with distorted segregation ratios were unique to each population with blocks on chromosomes 9 and 12 in DRH and 3, 4, 6 and 8 in D84. Chromosome assignment of markers based on linkage mapping differed from sequence alignment with the Potato Genome Sequencing Consortium (PGSC) pseudomolecules for 1% of the mapped markers with some disconcordant markers attributable to paralogs. In total, 126 (DRH) and 226 (D84) mapped markers were not anchored to the pseudomolecules and provide new scaffold anchoring data to improve the potato genome assembly. The high degree of concordance between the linkage maps and the pseudomolecules demonstrates both the quality of the potato genome sequence and the functionality of the Infinium 8303 Potato Array. The broad genome coverage of the Infinium 8303 Potato Array compared to other marker sets will enable numerous downstream applications.", "link"=>"http://www.mendeley.com/research/integration-two-diploid-potato-linkage-maps-potato-genome-sequence", "reader_count"=>91, "reader_count_by_academic_status"=>{"Unspecified"=>1, "Professor > Associate Professor"=>7, "Researcher"=>30, "Student > Doctoral Student"=>2, "Student > Ph. D. Student"=>26, "Student > Postgraduate"=>2, "Other"=>2, "Student > Master"=>18, "Student > Bachelor"=>2, "Lecturer"=>1}, "reader_count_by_user_role"=>{"Unspecified"=>1, "Professor > Associate Professor"=>7, "Researcher"=>30, "Student > Doctoral Student"=>2, "Student > Ph. D. Student"=>26, "Student > Postgraduate"=>2, "Other"=>2, "Student > Master"=>18, "Student > Bachelor"=>2, "Lecturer"=>1}, "reader_count_by_subject_area"=>{"Unspecified"=>1, "Environmental Science"=>1, "Biochemistry, Genetics and Molecular Biology"=>5, "Agricultural and Biological Sciences"=>83, "Earth and Planetary Sciences"=>1}, "reader_count_by_subdiscipline"=>{"Earth and Planetary Sciences"=>{"Earth and Planetary Sciences"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>83}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>5}, "Unspecified"=>{"Unspecified"=>1}, "Environmental Science"=>{"Environmental Science"=>1}}, "reader_count_by_country"=>{"Netherlands"=>1, "United States"=>1, "Brazil"=>1, "Italy"=>1, "Israel"=>1, "Slovenia"=>1, "France"=>1, "India"=>1}, "group_count"=>3}

CrossRef

Scopus | Further Information

{"@_fa"=>"true", "link"=>[{"@_fa"=>"true", "@ref"=>"self", "@href"=>"https://api.elsevier.com/content/abstract/scopus_id/84860442706"}, {"@_fa"=>"true", "@ref"=>"author-affiliation", "@href"=>"https://api.elsevier.com/content/abstract/scopus_id/84860442706?field=author,affiliation"}, {"@_fa"=>"true", "@ref"=>"scopus", "@href"=>"https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84860442706&origin=inward"}, {"@_fa"=>"true", "@ref"=>"scopus-citedby", "@href"=>"https://www.scopus.com/inward/citedby.uri?partnerID=HzOxMe3b&scp=84860442706&origin=inward"}], "prism:url"=>"https://api.elsevier.com/content/abstract/scopus_id/84860442706", "dc:identifier"=>"SCOPUS_ID:84860442706", "eid"=>"2-s2.0-84860442706", "dc:title"=>"Integration of two diploid potato linkage maps with the potato genome sequence", "dc:creator"=>"Felcher K.", "prism:publicationName"=>"PLoS ONE", "prism:eIssn"=>"19326203", "prism:volume"=>"7", "prism:issueIdentifier"=>"4", "prism:pageRange"=>nil, "prism:coverDate"=>"2012-04-27", "prism:coverDisplayDate"=>"27 April 2012", "prism:doi"=>"10.1371/journal.pone.0036347", "citedby-count"=>"123", "affiliation"=>[{"@_fa"=>"true", "affilname"=>"Michigan State University", "affiliation-city"=>"East Lansing", "affiliation-country"=>"United States"}], "pubmed-id"=>"22558443", "prism:aggregationType"=>"Journal", "subtype"=>"ar", "subtypeDescription"=>"Article", "article-number"=>"e36347", "source-id"=>"10600153309", "openaccess"=>"1", "openaccessFlag"=>true}

Facebook

  • {"url"=>"http%3A%2F%2Fjournals.plos.org%2Fplosone%2Farticle%3Fid%3D10.1371%252Fjournal.pone.0036347", "share_count"=>0, "like_count"=>0, "comment_count"=>0, "click_count"=>0, "total_count"=>0}

Counter

  • {"month"=>"4", "year"=>"2012", "pdf_views"=>"22", "xml_views"=>"5", "html_views"=>"98"}
  • {"month"=>"5", "year"=>"2012", "pdf_views"=>"70", "xml_views"=>"0", "html_views"=>"175"}
  • {"month"=>"6", "year"=>"2012", "pdf_views"=>"23", "xml_views"=>"1", "html_views"=>"81"}
  • {"month"=>"7", "year"=>"2012", "pdf_views"=>"26", "xml_views"=>"0", "html_views"=>"72"}
  • {"month"=>"8", "year"=>"2012", "pdf_views"=>"20", "xml_views"=>"5", "html_views"=>"56"}
  • {"month"=>"9", "year"=>"2012", "pdf_views"=>"21", "xml_views"=>"0", "html_views"=>"57"}
  • {"month"=>"10", "year"=>"2012", "pdf_views"=>"33", "xml_views"=>"0", "html_views"=>"96"}
  • {"month"=>"11", "year"=>"2012", "pdf_views"=>"33", "xml_views"=>"0", "html_views"=>"102"}
  • {"month"=>"12", "year"=>"2012", "pdf_views"=>"20", "xml_views"=>"0", "html_views"=>"68"}
  • {"month"=>"1", "year"=>"2013", "pdf_views"=>"24", "xml_views"=>"1", "html_views"=>"117"}
  • {"month"=>"2", "year"=>"2013", "pdf_views"=>"17", "xml_views"=>"1", "html_views"=>"110"}
  • {"month"=>"3", "year"=>"2013", "pdf_views"=>"20", "xml_views"=>"0", "html_views"=>"107"}
  • {"month"=>"4", "year"=>"2013", "pdf_views"=>"34", "xml_views"=>"1", "html_views"=>"111"}
  • {"month"=>"5", "year"=>"2013", "pdf_views"=>"26", "xml_views"=>"0", "html_views"=>"101"}
  • {"month"=>"6", "year"=>"2013", "pdf_views"=>"15", "xml_views"=>"1", "html_views"=>"61"}
  • {"month"=>"7", "year"=>"2013", "pdf_views"=>"21", "xml_views"=>"0", "html_views"=>"96"}
  • {"month"=>"8", "year"=>"2013", "pdf_views"=>"17", "xml_views"=>"0", "html_views"=>"75"}
  • {"month"=>"9", "year"=>"2013", "pdf_views"=>"15", "xml_views"=>"0", "html_views"=>"98"}
  • {"month"=>"10", "year"=>"2013", "pdf_views"=>"23", "xml_views"=>"2", "html_views"=>"100"}
  • {"month"=>"11", "year"=>"2013", "pdf_views"=>"21", "xml_views"=>"0", "html_views"=>"135"}
  • {"month"=>"12", "year"=>"2013", "pdf_views"=>"15", "xml_views"=>"0", "html_views"=>"88"}
  • {"month"=>"1", "year"=>"2014", "pdf_views"=>"13", "xml_views"=>"0", "html_views"=>"100"}
  • {"month"=>"2", "year"=>"2014", "pdf_views"=>"15", "xml_views"=>"0", "html_views"=>"116"}
  • {"month"=>"3", "year"=>"2014", "pdf_views"=>"8", "xml_views"=>"1", "html_views"=>"86"}
  • {"month"=>"4", "year"=>"2014", "pdf_views"=>"24", "xml_views"=>"1", "html_views"=>"72"}
  • {"month"=>"5", "year"=>"2014", "pdf_views"=>"17", "xml_views"=>"0", "html_views"=>"92"}
  • {"month"=>"6", "year"=>"2014", "pdf_views"=>"9", "xml_views"=>"0", "html_views"=>"63"}
  • {"month"=>"7", "year"=>"2014", "pdf_views"=>"14", "xml_views"=>"0", "html_views"=>"98"}
  • {"month"=>"8", "year"=>"2014", "pdf_views"=>"12", "xml_views"=>"2", "html_views"=>"62"}
  • {"month"=>"9", "year"=>"2014", "pdf_views"=>"6", "xml_views"=>"1", "html_views"=>"63"}
  • {"month"=>"10", "year"=>"2014", "pdf_views"=>"16", "xml_views"=>"1", "html_views"=>"89"}
  • {"month"=>"11", "year"=>"2014", "pdf_views"=>"13", "xml_views"=>"1", "html_views"=>"68"}
  • {"month"=>"12", "year"=>"2014", "pdf_views"=>"5", "xml_views"=>"1", "html_views"=>"44"}
  • {"month"=>"1", "year"=>"2015", "pdf_views"=>"8", "xml_views"=>"0", "html_views"=>"47"}
  • {"month"=>"2", "year"=>"2015", "pdf_views"=>"7", "xml_views"=>"0", "html_views"=>"35"}
  • {"month"=>"3", "year"=>"2015", "pdf_views"=>"16", "xml_views"=>"0", "html_views"=>"74"}
  • {"month"=>"4", "year"=>"2015", "pdf_views"=>"10", "xml_views"=>"1", "html_views"=>"44"}
  • {"month"=>"5", "year"=>"2015", "pdf_views"=>"10", "xml_views"=>"0", "html_views"=>"64"}
  • {"month"=>"6", "year"=>"2015", "pdf_views"=>"6", "xml_views"=>"0", "html_views"=>"139"}
  • {"month"=>"7", "year"=>"2015", "pdf_views"=>"5", "xml_views"=>"0", "html_views"=>"64"}
  • {"month"=>"8", "year"=>"2015", "pdf_views"=>"3", "xml_views"=>"1", "html_views"=>"38"}
  • {"month"=>"9", "year"=>"2015", "pdf_views"=>"11", "xml_views"=>"0", "html_views"=>"72"}
  • {"month"=>"10", "year"=>"2015", "pdf_views"=>"13", "xml_views"=>"0", "html_views"=>"146"}
  • {"month"=>"11", "year"=>"2015", "pdf_views"=>"9", "xml_views"=>"0", "html_views"=>"107"}
  • {"month"=>"12", "year"=>"2015", "pdf_views"=>"12", "xml_views"=>"0", "html_views"=>"130"}
  • {"month"=>"1", "year"=>"2016", "pdf_views"=>"8", "xml_views"=>"0", "html_views"=>"117"}
  • {"month"=>"2", "year"=>"2016", "pdf_views"=>"2", "xml_views"=>"0", "html_views"=>"56"}
  • {"month"=>"3", "year"=>"2016", "pdf_views"=>"15", "xml_views"=>"0", "html_views"=>"98"}
  • {"month"=>"4", "year"=>"2016", "pdf_views"=>"17", "xml_views"=>"0", "html_views"=>"57"}
  • {"month"=>"5", "year"=>"2016", "pdf_views"=>"11", "xml_views"=>"0", "html_views"=>"45"}
  • {"month"=>"6", "year"=>"2016", "pdf_views"=>"14", "xml_views"=>"0", "html_views"=>"57"}
  • {"month"=>"7", "year"=>"2016", "pdf_views"=>"3", "xml_views"=>"0", "html_views"=>"36"}
  • {"month"=>"8", "year"=>"2016", "pdf_views"=>"17", "xml_views"=>"0", "html_views"=>"83"}
  • {"month"=>"9", "year"=>"2016", "pdf_views"=>"19", "xml_views"=>"0", "html_views"=>"40"}
  • {"month"=>"10", "year"=>"2016", "pdf_views"=>"12", "xml_views"=>"0", "html_views"=>"46"}
  • {"month"=>"11", "year"=>"2016", "pdf_views"=>"6", "xml_views"=>"0", "html_views"=>"52"}
  • {"month"=>"12", "year"=>"2016", "pdf_views"=>"7", "xml_views"=>"1", "html_views"=>"44"}
  • {"month"=>"1", "year"=>"2017", "pdf_views"=>"13", "xml_views"=>"1", "html_views"=>"34"}
  • {"month"=>"2", "year"=>"2017", "pdf_views"=>"8", "xml_views"=>"1", "html_views"=>"71"}
  • {"month"=>"3", "year"=>"2017", "pdf_views"=>"11", "xml_views"=>"0", "html_views"=>"68"}
  • {"month"=>"4", "year"=>"2017", "pdf_views"=>"13", "xml_views"=>"0", "html_views"=>"71"}
  • {"month"=>"5", "year"=>"2017", "pdf_views"=>"15", "xml_views"=>"1", "html_views"=>"48"}
  • {"month"=>"6", "year"=>"2017", "pdf_views"=>"3", "xml_views"=>"0", "html_views"=>"41"}
  • {"month"=>"7", "year"=>"2017", "pdf_views"=>"7", "xml_views"=>"3", "html_views"=>"40"}
  • {"month"=>"8", "year"=>"2017", "pdf_views"=>"5", "xml_views"=>"1", "html_views"=>"50"}
  • {"month"=>"9", "year"=>"2017", "pdf_views"=>"9", "xml_views"=>"0", "html_views"=>"43"}
  • {"month"=>"10", "year"=>"2017", "pdf_views"=>"6", "xml_views"=>"1", "html_views"=>"46"}
  • {"month"=>"11", "year"=>"2017", "pdf_views"=>"9", "xml_views"=>"0", "html_views"=>"70"}
  • {"month"=>"12", "year"=>"2017", "pdf_views"=>"6", "xml_views"=>"1", "html_views"=>"41"}
  • {"month"=>"1", "year"=>"2018", "pdf_views"=>"16", "xml_views"=>"1", "html_views"=>"58"}
  • {"month"=>"2", "year"=>"2018", "pdf_views"=>"2", "xml_views"=>"1", "html_views"=>"26"}
  • {"month"=>"3", "year"=>"2018", "pdf_views"=>"22", "xml_views"=>"1", "html_views"=>"20"}
  • {"month"=>"4", "year"=>"2018", "pdf_views"=>"12", "xml_views"=>"1", "html_views"=>"19"}
  • {"month"=>"5", "year"=>"2018", "pdf_views"=>"8", "xml_views"=>"0", "html_views"=>"18"}
  • {"month"=>"6", "year"=>"2018", "pdf_views"=>"5", "xml_views"=>"1", "html_views"=>"12"}
  • {"month"=>"7", "year"=>"2018", "pdf_views"=>"12", "xml_views"=>"3", "html_views"=>"14"}
  • {"month"=>"8", "year"=>"2018", "pdf_views"=>"8", "xml_views"=>"4", "html_views"=>"14"}
  • {"month"=>"9", "year"=>"2018", "pdf_views"=>"11", "xml_views"=>"1", "html_views"=>"30"}
  • {"month"=>"10", "year"=>"2018", "pdf_views"=>"15", "xml_views"=>"1", "html_views"=>"19"}
  • {"month"=>"11", "year"=>"2018", "pdf_views"=>"11", "xml_views"=>"0", "html_views"=>"14"}
  • {"month"=>"12", "year"=>"2018", "pdf_views"=>"6", "xml_views"=>"0", "html_views"=>"15"}
  • {"month"=>"1", "year"=>"2019", "pdf_views"=>"10", "xml_views"=>"2", "html_views"=>"24"}
  • {"month"=>"2", "year"=>"2019", "pdf_views"=>"2", "xml_views"=>"0", "html_views"=>"18"}
  • {"month"=>"3", "year"=>"2019", "pdf_views"=>"4", "xml_views"=>"0", "html_views"=>"24"}
  • {"month"=>"4", "year"=>"2019", "pdf_views"=>"7", "xml_views"=>"0", "html_views"=>"12"}
  • {"month"=>"5", "year"=>"2019", "pdf_views"=>"12", "xml_views"=>"0", "html_views"=>"26"}
  • {"month"=>"6", "year"=>"2019", "pdf_views"=>"13", "xml_views"=>"0", "html_views"=>"17"}
  • {"month"=>"7", "year"=>"2019", "pdf_views"=>"4", "xml_views"=>"2", "html_views"=>"5"}
  • {"month"=>"8", "year"=>"2019", "pdf_views"=>"10", "xml_views"=>"0", "html_views"=>"8"}
  • {"month"=>"9", "year"=>"2019", "pdf_views"=>"11", "xml_views"=>"0", "html_views"=>"23"}
  • {"month"=>"10", "year"=>"2019", "pdf_views"=>"10", "xml_views"=>"0", "html_views"=>"20"}
  • {"month"=>"11", "year"=>"2019", "pdf_views"=>"5", "xml_views"=>"0", "html_views"=>"17"}
  • {"month"=>"12", "year"=>"2019", "pdf_views"=>"14", "xml_views"=>"0", "html_views"=>"20"}
  • {"month"=>"1", "year"=>"2020", "pdf_views"=>"4", "xml_views"=>"2", "html_views"=>"13"}
  • {"month"=>"2", "year"=>"2020", "pdf_views"=>"9", "xml_views"=>"1", "html_views"=>"14"}
  • {"month"=>"3", "year"=>"2020", "pdf_views"=>"7", "xml_views"=>"0", "html_views"=>"15"}
  • {"month"=>"4", "year"=>"2020", "pdf_views"=>"9", "xml_views"=>"0", "html_views"=>"10"}
  • {"month"=>"5", "year"=>"2020", "pdf_views"=>"14", "xml_views"=>"1", "html_views"=>"5"}

Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/647277"], "description"=>"<p>Distribution of mapped markers in DRH, D84 and the Infinium 8303 Potato Array.</p>", "links"=>[], "tags"=>["mapped", "markers", "d84", "infinium", "8303"], "article_id"=>317758, "categories"=>["Biotechnology", "Genetics", "Plant Biology"], "users"=>["Kimberly J. Felcher", "Joseph J. Coombs", "Alicia N. Massa", "Candice N. Hansey", "John P. Hamilton", "Richard E. Veilleux", "C. Robin Buell", "David S. Douches"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036347.t002", "stats"=>{"downloads"=>1, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Distribution_of_mapped_markers_in_DRH_D84_and_the_Infinium_8303_Potato_Array_/317758", "title"=>"Distribution of mapped markers in DRH, D84 and the Infinium 8303 Potato Array.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-04-27 02:09:18"}
  • {"files"=>["https://ndownloader.figshare.com/files/647103"], "description"=>"<p><b>A.</b> Chromosome 10 from population D84 demonstrating poor concordance between physical and genetic position. <b>B.</b> Chromosome 10 from population D84 after correcting the order and orientation of the superscaffolds in the pseudomolecules.</p>", "links"=>[], "tags"=>["chromosome", "10", "98"], "article_id"=>317587, "categories"=>["Biotechnology", "Genetics", "Plant Biology"], "users"=>["Kimberly J. Felcher", "Joseph J. Coombs", "Alicia N. Massa", "Candice N. Hansey", "John P. Hamilton", "Richard E. Veilleux", "C. Robin Buell", "David S. Douches"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036347.g004", "stats"=>{"downloads"=>1, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Graph_of_chromosome_10_D84_showing_the_genetic_location_cM_and_the_physical_position_Mb_of_98_markers_and_the_estimated_local_recombination_/317587", "title"=>"Graph of chromosome 10 (D84) showing the genetic location (cM) and the physical position (Mb) of 98 markers, and the estimated local recombination.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-04-27 02:06:27"}
  • {"files"=>["https://ndownloader.figshare.com/files/647439"], "description"=>"<p>Position and size of blocks with distorted segregation.</p>", "links"=>[], "tags"=>["blocks", "distorted"], "article_id"=>317929, "categories"=>["Biotechnology", "Genetics", "Plant Biology"], "users"=>["Kimberly J. Felcher", "Joseph J. Coombs", "Alicia N. Massa", "Candice N. Hansey", "John P. Hamilton", "Richard E. Veilleux", "C. Robin Buell", "David S. Douches"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036347.t005", "stats"=>{"downloads"=>0, "page_views"=>2, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Position_and_size_of_blocks_with_distorted_segregation_/317929", "title"=>"Position and size of blocks with distorted segregation.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-04-27 02:12:09"}
  • {"files"=>["https://ndownloader.figshare.com/files/333688", "https://ndownloader.figshare.com/files/333998", "https://ndownloader.figshare.com/files/334176", "https://ndownloader.figshare.com/files/334296", "https://ndownloader.figshare.com/files/334381", "https://ndownloader.figshare.com/files/334449", "https://ndownloader.figshare.com/files/334480", "https://ndownloader.figshare.com/files/334503", "https://ndownloader.figshare.com/files/334520", "https://ndownloader.figshare.com/files/334542"], "description"=>"<div><p>To facilitate genome-guided breeding in potato, we developed an 8303 Single Nucleotide Polymorphism (SNP) marker array using potato genome and transcriptome resources. To validate the Infinium 8303 Potato Array, we developed linkage maps from two diploid populations (DRH and D84) and compared these maps with the assembled potato genome sequence. Both populations used the doubled monoploid reference genotype DM1-3 516 R44 as the female parent but had different heterozygous diploid male parents (RH89-039-16 and 84SD22). Over 4,400 markers were mapped (1,960 in DRH and 2,454 in D84, 787 in common) resulting in map sizes of 965 (DRH) and 792 (D84) cM, covering 87% (DRH) and 88% (D84) of genome sequence length. Of the mapped markers, 33.5% were in candidate genes selected for the array, 4.5% were markers from existing genetic maps, and 61% were selected based on distribution across the genome. Markers with distorted segregation ratios occurred in blocks in both linkage maps, accounting for 4% (DRH) and 9% (D84) of mapped markers. Markers with distorted segregation ratios were unique to each population with blocks on chromosomes 9 and 12 in DRH and 3, 4, 6 and 8 in D84. Chromosome assignment of markers based on linkage mapping differed from sequence alignment with the Potato Genome Sequencing Consortium (PGSC) pseudomolecules for 1% of the mapped markers with some disconcordant markers attributable to paralogs. In total, 126 (DRH) and 226 (D84) mapped markers were not anchored to the pseudomolecules and provide new scaffold anchoring data to improve the potato genome assembly. The high degree of concordance between the linkage maps and the pseudomolecules demonstrates both the quality of the potato genome sequence and the functionality of the Infinium 8303 Potato Array. The broad genome coverage of the Infinium 8303 Potato Array compared to other marker sets will enable numerous downstream applications.</p> </div>", "links"=>[], "tags"=>["diploid", "linkage", "maps", "genome"], "article_id"=>125909, "categories"=>["Biotechnology", "Genetics", "Cell Biology"], "users"=>["Kimberly J. Felcher", "Joseph J. Coombs", "Alicia N. Massa", "Candice N. Hansey", "John P. Hamilton", "Richard E. Veilleux", "C. Robin Buell", "David S. Douches"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0036347.s001", "https://dx.doi.org/10.1371/journal.pone.0036347.s002", "https://dx.doi.org/10.1371/journal.pone.0036347.s003", "https://dx.doi.org/10.1371/journal.pone.0036347.s004", "https://dx.doi.org/10.1371/journal.pone.0036347.s005", "https://dx.doi.org/10.1371/journal.pone.0036347.s006", "https://dx.doi.org/10.1371/journal.pone.0036347.s007", "https://dx.doi.org/10.1371/journal.pone.0036347.s008", "https://dx.doi.org/10.1371/journal.pone.0036347.s009", "https://dx.doi.org/10.1371/journal.pone.0036347.s010"], "stats"=>{"downloads"=>32, "page_views"=>41, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Integration_of_Two_Diploid_Potato_Linkage_Maps_with_the_Potato_Genome_Sequence/125909", "title"=>"Integration of Two Diploid Potato Linkage Maps with the Potato Genome Sequence", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2012-04-27 01:38:29"}
  • {"files"=>["https://ndownloader.figshare.com/files/646676"], "description"=>"<p>Alignment of chromosome 1 from DRH (left) and D84 (right).</p>", "links"=>[], "tags"=>["chromosome", "drh", "d84"], "article_id"=>317158, "categories"=>["Biotechnology", "Genetics", "Plant Biology"], "users"=>["Kimberly J. Felcher", "Joseph J. Coombs", "Alicia N. Massa", "Candice N. Hansey", "John P. Hamilton", "Richard E. Veilleux", "C. Robin Buell", "David S. Douches"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036347.g001", "stats"=>{"downloads"=>1, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Alignment_of_chromosome_1_from_DRH_left_and_D84_right_/317158", "title"=>"Alignment of chromosome 1 from DRH (left) and D84 (right).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-04-27 01:59:18"}
  • {"files"=>["https://ndownloader.figshare.com/files/647482"], "description"=>"z<p>Includes co-segregating markers plus mapped markers: 1960 (DRH) and 2454 (D84).</p>y<p>Total number of mapped markers: 944 (DRH) and 637 (DRH).</p>x<p>Percentage of markers per chromosome.</p>", "links"=>[], "tags"=>["distorted", "segregation", "ratios", "populations", "drh"], "article_id"=>317963, "categories"=>["Biotechnology", "Genetics", "Plant Biology"], "users"=>["Kimberly J. Felcher", "Joseph J. Coombs", "Alicia N. Massa", "Candice N. Hansey", "John P. Hamilton", "Richard E. Veilleux", "C. Robin Buell", "David S. Douches"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036347.t004", "stats"=>{"downloads"=>1, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Markers_with_distorted_segregation_ratios_in_populations_DRH_and_D84_/317963", "title"=>"Markers with distorted segregation ratios in populations DRH and D84.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-04-27 02:12:43"}
  • {"files"=>["https://ndownloader.figshare.com/files/647397"], "description"=>"z<p>Chromosome as determined by the pseudomolecules generated by the Potato Genome Sequencing Consortium.</p>y<p>SNP c2_37964 mapped to two pseudomolecule locations which were both disconcordant with the linkage map positions in DRH and D84 and is therefore included twice in this table.</p>x<p>Based on the number of segregating markers per chromosome.</p>", "links"=>[], "tags"=>["disconcordant", "markers"], "article_id"=>317884, "categories"=>["Biotechnology", "Genetics", "Plant Biology"], "users"=>["Kimberly J. Felcher", "Joseph J. Coombs", "Alicia N. Massa", "Candice N. Hansey", "John P. Hamilton", "Richard E. Veilleux", "C. Robin Buell", "David S. Douches"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036347.t006", "stats"=>{"downloads"=>1, "page_views"=>2, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Summary_of_disconcordant_markers_for_each_of_the_mapping_populations_/317884", "title"=>"Summary of disconcordant markers for each of the mapping populations.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-04-27 02:11:24"}
  • {"files"=>["https://ndownloader.figshare.com/files/647357"], "description"=>"z<p>Chromosome as determined by the pseudomolecules generated by the Potato Genome Sequencing Consortium.</p>", "links"=>[], "tags"=>["markers", "anchored"], "article_id"=>317846, "categories"=>["Biotechnology", "Genetics", "Plant Biology"], "users"=>["Kimberly J. Felcher", "Joseph J. Coombs", "Alicia N. Massa", "Candice N. Hansey", "John P. Hamilton", "Richard E. Veilleux", "C. Robin Buell", "David S. Douches"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036347.t007", "stats"=>{"downloads"=>1, "page_views"=>2, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Mapped_markers_that_were_not_anchored_to_the_pseudomolecules_/317846", "title"=>"Mapped markers that were not anchored to the pseudomolecules.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-04-27 02:10:46"}
  • {"files"=>["https://ndownloader.figshare.com/files/647328"], "description"=>"z<p>Includes co-segregating markers plus mapped markers; 14 ungrouped markers and their 15 co-segregating markers from population DRH were not included in this list.</p>y<p>Length spanned by the northern- and southern-most markers.</p>x<p>Total length.</p>", "links"=>[], "tags"=>["markers", "mapped", "diploid", "drh"], "article_id"=>317811, "categories"=>["Biotechnology", "Genetics", "Plant Biology"], "users"=>["Kimberly J. Felcher", "Joseph J. Coombs", "Alicia N. Massa", "Candice N. Hansey", "John P. Hamilton", "Richard E. Veilleux", "C. Robin Buell", "David S. Douches"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036347.t001", "stats"=>{"downloads"=>1, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Comparison_of_markers_mapped_in_two_diploid_populations_DRH_and_D84_/317811", "title"=>"Comparison of markers mapped in two diploid populations, DRH and D84.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-04-27 02:10:11"}
  • {"files"=>["https://ndownloader.figshare.com/files/646828"], "description"=>"<p>Graphs of DRH SNP marker position (cM) vs. D84 SNP marker position (cM) for all 12 potato chromosomes.</p>", "links"=>[], "tags"=>["drh", "snp", "d84", "12"], "article_id"=>317316, "categories"=>["Biotechnology", "Genetics", "Plant Biology"], "users"=>["Kimberly J. Felcher", "Joseph J. Coombs", "Alicia N. Massa", "Candice N. Hansey", "John P. Hamilton", "Richard E. Veilleux", "C. Robin Buell", "David S. Douches"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036347.g002", "stats"=>{"downloads"=>2, "page_views"=>16, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Graphs_of_DRH_SNP_marker_position_cM_vs_D84_SNP_marker_position_cM_for_all_12_potato_chromosomes_/317316", "title"=>"Graphs of DRH SNP marker position (cM) vs. D84 SNP marker position (cM) for all 12 potato chromosomes.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-04-27 02:01:56"}
  • {"files"=>["https://ndownloader.figshare.com/files/646943"], "description"=>"<p>Graph of chromosome 4 (D84) showing the genetic location (cM) and the physical position (Mb) of 204 markers, and the estimated local recombination.</p>", "links"=>[], "tags"=>["chromosome", "204"], "article_id"=>317430, "categories"=>["Biotechnology", "Genetics", "Plant Biology"], "users"=>["Kimberly J. Felcher", "Joseph J. Coombs", "Alicia N. Massa", "Candice N. Hansey", "John P. Hamilton", "Richard E. Veilleux", "C. Robin Buell", "David S. Douches"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036347.g003", "stats"=>{"downloads"=>2, "page_views"=>26, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Graph_of_chromosome_4_D84_showing_the_genetic_location_cM_and_the_physical_position_Mb_of_204_markers_and_the_estimated_local_recombination_/317430", "title"=>"Graph of chromosome 4 (D84) showing the genetic location (cM) and the physical position (Mb) of 204 markers, and the estimated local recombination.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-04-27 02:03:50"}
  • {"files"=>["https://ndownloader.figshare.com/files/647231"], "description"=>"z<p>The number of co-segregating markers in the UHD maps was calculated by subtracting the number of filled bins from the number of markers used for map construction.</p>", "links"=>[], "tags"=>["diploid", "linkage", "d84", "drh", "maps", "ultra-high"], "article_id"=>317714, "categories"=>["Biotechnology", "Genetics", "Plant Biology"], "users"=>["Kimberly J. Felcher", "Joseph J. Coombs", "Alicia N. Massa", "Candice N. Hansey", "John P. Hamilton", "Richard E. Veilleux", "C. Robin Buell", "David S. Douches"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036347.t003", "stats"=>{"downloads"=>1, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Comparison_of_four_diploid_potato_linkage_maps_D84_and_DRH_maps_SNP_based_and_the_ultra_high_density_UHD_maps_AFLP_based_5_/317714", "title"=>"Comparison of four diploid potato linkage maps: D84 and DRH maps (SNP based) and the ultra-high density (UHD) maps (AFLP-based [5]).", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-04-27 02:08:34"}

PMC Usage Stats | Further Information

  • {"scanned-page-browse"=>"0", "month"=>"5", "cited-by"=>"0", "abstract"=>"0", "full-text"=>"24", "unique-ip"=>"24", "pdf"=>"13", "year"=>"2012", "figure"=>"1", "scanned-summary"=>"0", "supp-data"=>"1"}
  • {"month"=>"6", "scanned-page-browse"=>"0", "cited-by"=>"0", "abstract"=>"0", "full-text"=>"18", "year"=>"2012", "pdf"=>"6", "unique-ip"=>"15", "figure"=>"1", "scanned-summary"=>"0", "supp-data"=>"2"}
  • {"unique-ip"=>"13", "full-text"=>"15", "pdf"=>"7", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2012", "month"=>"7"}
  • {"unique-ip"=>"20", "full-text"=>"22", "pdf"=>"15", "abstract"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"13", "cited-by"=>"0", "year"=>"2012", "month"=>"8"}
  • {"unique-ip"=>"12", "full-text"=>"15", "pdf"=>"10", "abstract"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"3", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2012", "month"=>"9"}
  • {"unique-ip"=>"13", "full-text"=>"11", "pdf"=>"6", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"4", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2012", "month"=>"10"}
  • {"unique-ip"=>"10", "full-text"=>"6", "pdf"=>"7", "abstract"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2012", "month"=>"12"}
  • {"unique-ip"=>"14", "full-text"=>"12", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"9", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2013", "month"=>"1"}
  • {"unique-ip"=>"7", "full-text"=>"7", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2013", "month"=>"3"}
  • {"unique-ip"=>"13", "full-text"=>"11", "pdf"=>"5", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"3", "supp-data"=>"3", "cited-by"=>"0", "year"=>"2013", "month"=>"2"}
  • {"unique-ip"=>"8", "full-text"=>"7", "pdf"=>"7", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2013", "month"=>"4"}
  • {"unique-ip"=>"17", "full-text"=>"16", "pdf"=>"10", "abstract"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"4", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2012", "month"=>"11"}
  • {"unique-ip"=>"10", "full-text"=>"10", "pdf"=>"4", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"4", "supp-data"=>"10", "cited-by"=>"0", "year"=>"2013", "month"=>"5"}
  • {"unique-ip"=>"12", "full-text"=>"11", "pdf"=>"4", "abstract"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"15", "cited-by"=>"0", "year"=>"2013", "month"=>"6"}
  • {"unique-ip"=>"6", "full-text"=>"7", "pdf"=>"5", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"8", "cited-by"=>"0", "year"=>"2013", "month"=>"7"}
  • {"unique-ip"=>"3", "full-text"=>"3", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"11", "cited-by"=>"0", "year"=>"2013", "month"=>"8"}
  • {"unique-ip"=>"6", "full-text"=>"7", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2013", "month"=>"9"}
  • {"unique-ip"=>"10", "full-text"=>"9", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"10", "cited-by"=>"0", "year"=>"2013", "month"=>"10"}
  • {"unique-ip"=>"8", "full-text"=>"8", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2013", "month"=>"11"}
  • {"unique-ip"=>"4", "full-text"=>"4", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2013", "month"=>"12"}
  • {"unique-ip"=>"9", "full-text"=>"9", "pdf"=>"6", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2014", "month"=>"1"}
  • {"unique-ip"=>"2", "full-text"=>"3", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2014", "month"=>"2"}
  • {"unique-ip"=>"5", "full-text"=>"4", "pdf"=>"3", "abstract"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2014", "month"=>"3"}
  • {"unique-ip"=>"11", "full-text"=>"13", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"3", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2014", "month"=>"5"}
  • {"unique-ip"=>"6", "full-text"=>"8", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2014", "month"=>"6"}
  • {"unique-ip"=>"11", "full-text"=>"12", "pdf"=>"7", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2014", "month"=>"4"}
  • {"unique-ip"=>"4", "full-text"=>"4", "pdf"=>"4", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"3", "cited-by"=>"0", "year"=>"2015", "month"=>"4"}
  • {"unique-ip"=>"7", "full-text"=>"10", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"2", "cited-by"=>"0", "year"=>"2015", "month"=>"5"}
  • {"unique-ip"=>"8", "full-text"=>"8", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"3", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"6"}
  • {"unique-ip"=>"4", "full-text"=>"4", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"7"}
  • {"unique-ip"=>"5", "full-text"=>"4", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"3"}
  • {"unique-ip"=>"8", "full-text"=>"5", "pdf"=>"5", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"2"}
  • {"unique-ip"=>"4", "full-text"=>"3", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"8"}
  • {"unique-ip"=>"7", "full-text"=>"5", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"9"}
  • {"unique-ip"=>"3", "full-text"=>"1", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"1", "year"=>"2015", "month"=>"10"}
  • {"unique-ip"=>"29", "full-text"=>"15", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"5", "supp-data"=>"3", "cited-by"=>"0", "year"=>"2014", "month"=>"7"}
  • {"unique-ip"=>"10", "full-text"=>"2", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"2", "cited-by"=>"0", "year"=>"2014", "month"=>"8"}
  • {"unique-ip"=>"8", "full-text"=>"0", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"3", "cited-by"=>"0", "year"=>"2014", "month"=>"9"}
  • {"unique-ip"=>"15", "full-text"=>"5", "pdf"=>"5", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"4", "supp-data"=>"2", "cited-by"=>"0", "year"=>"2014", "month"=>"10"}
  • {"unique-ip"=>"4", "full-text"=>"4", "pdf"=>"5", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2016", "month"=>"2"}
  • {"unique-ip"=>"8", "full-text"=>"5", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2014", "month"=>"11"}
  • {"unique-ip"=>"7", "full-text"=>"6", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2014", "month"=>"12"}
  • {"unique-ip"=>"4", "full-text"=>"4", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"1"}
  • {"unique-ip"=>"12", "full-text"=>"10", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"11"}
  • {"unique-ip"=>"9", "full-text"=>"4", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2015", "month"=>"12"}
  • {"unique-ip"=>"10", "full-text"=>"7", "pdf"=>"4", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"1"}
  • {"unique-ip"=>"3", "full-text"=>"1", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"4"}
  • {"unique-ip"=>"2", "full-text"=>"2", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"5"}
  • {"unique-ip"=>"4", "full-text"=>"4", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"6"}
  • {"unique-ip"=>"2", "full-text"=>"2", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"7"}
  • {"unique-ip"=>"3", "full-text"=>"3", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"8"}
  • {"unique-ip"=>"5", "full-text"=>"5", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"9"}
  • {"unique-ip"=>"3", "full-text"=>"3", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"10"}
  • {"unique-ip"=>"5", "full-text"=>"4", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"11"}
  • {"unique-ip"=>"2", "full-text"=>"2", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"12"}
  • {"unique-ip"=>"8", "full-text"=>"1", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"1"}
  • {"unique-ip"=>"2", "full-text"=>"2", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"2"}
  • {"unique-ip"=>"3", "full-text"=>"3", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"3"}
  • {"unique-ip"=>"6", "full-text"=>"4", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"4", "cited-by"=>"0", "year"=>"2017", "month"=>"4"}
  • {"unique-ip"=>"4", "full-text"=>"3", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"5"}
  • {"unique-ip"=>"2", "full-text"=>"2", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2017", "month"=>"6"}
  • {"unique-ip"=>"2", "full-text"=>"1", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"7"}
  • {"unique-ip"=>"7", "full-text"=>"9", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"4", "supp-data"=>"0", "cited-by"=>"1", "year"=>"2017", "month"=>"8"}
  • {"unique-ip"=>"8", "full-text"=>"4", "pdf"=>"7", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"9"}
  • {"unique-ip"=>"6", "full-text"=>"6", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"10"}
  • {"unique-ip"=>"1", "full-text"=>"1", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"11"}
  • {"unique-ip"=>"1", "full-text"=>"1", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2017", "month"=>"12"}
  • {"unique-ip"=>"1", "full-text"=>"1", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"2"}
  • {"unique-ip"=>"8", "full-text"=>"9", "pdf"=>"4", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"3"}
  • {"unique-ip"=>"8", "full-text"=>"11", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"1"}
  • {"unique-ip"=>"8", "full-text"=>"10", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2018", "month"=>"4"}
  • {"unique-ip"=>"6", "full-text"=>"7", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"12", "cited-by"=>"0", "year"=>"2018", "month"=>"5"}
  • {"unique-ip"=>"1", "full-text"=>"1", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"6"}
  • {"unique-ip"=>"14", "full-text"=>"19", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"12"}
  • {"unique-ip"=>"3", "full-text"=>"4", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"10"}
  • {"unique-ip"=>"7", "full-text"=>"4", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"3", "cited-by"=>"0", "year"=>"2018", "month"=>"7"}
  • {"unique-ip"=>"7", "full-text"=>"8", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"4", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"8"}
  • {"unique-ip"=>"8", "full-text"=>"4", "pdf"=>"6", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"11"}
  • {"unique-ip"=>"4", "full-text"=>"5", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"9"}
  • {"unique-ip"=>"3", "full-text"=>"3", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"2"}
  • {"unique-ip"=>"2", "full-text"=>"4", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"3"}
  • {"unique-ip"=>"6", "full-text"=>"5", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"4"}
  • {"unique-ip"=>"4", "full-text"=>"5", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"5"}
  • {"unique-ip"=>"4", "full-text"=>"3", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"8"}
  • {"unique-ip"=>"2", "full-text"=>"2", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"9"}
  • {"unique-ip"=>"7", "full-text"=>"9", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"10", "cited-by"=>"0", "year"=>"2019", "month"=>"10"}
  • {"unique-ip"=>"6", "full-text"=>"1", "pdf"=>"6", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"12"}
  • {"unique-ip"=>"11", "full-text"=>"10", "pdf"=>"6", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2020", "month"=>"2"}
  • {"unique-ip"=>"8", "full-text"=>"8", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"6", "cited-by"=>"2", "year"=>"2020", "month"=>"3"}
  • {"unique-ip"=>"21", "full-text"=>"26", "pdf"=>"4", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"3", "cited-by"=>"0", "year"=>"2020", "month"=>"4"}

Relative Metric

{"start_date"=>"2012-01-01T00:00:00Z", "end_date"=>"2012-12-31T00:00:00Z", "subject_areas"=>[{"subject_area"=>"/Biology and life sciences", "average_usage"=>[322, 550, 671, 773, 864, 955, 1048, 1135, 1223, 1308, 1387, 1465, 1534, 1602, 1673, 1744, 1813, 1885, 1955, 2026, 2093, 2160, 2228, 2290, 2349]}, {"subject_area"=>"/Biology and life sciences/Agriculture", "average_usage"=>[323, 536, 657, 751, 847, 939, 1032, 1114, 1201, 1279, 1355, 1431, 1516, 1582, 1656, 1719, 1791, 1848, 1919, 2000, 2068, 2127, 2208, 2281, 2359]}, {"subject_area"=>"/Biology and life sciences/Biochemistry", "average_usage"=>[316, 541, 663, 766, 856, 950, 1041, 1128, 1218, 1302, 1382, 1456, 1526, 1593, 1657, 1729, 1796, 1862, 1930, 1999, 2065, 2132, 2202, 2261, 2319]}, {"subject_area"=>"/Biology and life sciences/Cell biology", "average_usage"=>[319, 556, 679, 785, 881, 970, 1062, 1149, 1236, 1323, 1402, 1474, 1545, 1617, 1681, 1754, 1822, 1892, 1963, 2031, 2099, 2165, 2233, 2299, 2359]}, {"subject_area"=>"/Biology and life sciences/Evolutionary biology", "average_usage"=>[366, 574, 695, 795, 885, 973, 1063, 1148, 1233, 1319, 1389, 1459, 1533, 1611, 1685, 1754, 1820, 1882, 1937, 2001, 2071, 2129, 2219, 2273, 2335]}, {"subject_area"=>"/Biology and life sciences/Genetics", "average_usage"=>[333, 576, 707, 814, 908, 1004, 1104, 1197, 1280, 1370, 1449, 1531, 1603, 1673, 1742, 1817, 1886, 1954, 2025, 2098, 2171, 2234, 2304, 2365, 2431]}, {"subject_area"=>"/Biology and life sciences/Plant science", "average_usage"=>[329, 543, 667, 773, 865, 963, 1066, 1149, 1233, 1323, 1411, 1500, 1588, 1661, 1732, 1803, 1887, 1978, 2057, 2138, 2203, 2283, 2363, 2419, 2493]}]}
Loading … Spinner

Net::HTTPTooManyRequests

Source
Scopus
Time
2019-08-27 19:05:30 UTC
Target URL
https://api.elsevier.com/content/search/index:SCOPUS?query=DOI(10.1371%2Fjournal.pone.0036347)
Trace

/app/models/concerns/networkable.rb:21:in `get_result'
/app/models/source.rb:165:in `get_data'
/app/models/retrieval_status.rb:47:in `perform_get_data'
/app/jobs/source_job.rb:52:in `block (2 levels) in perform'
/app/jobs/source_job.rb:51:in `block in perform'
/app/jobs/source_job.rb:35:in `each'
/app/jobs/source_job.rb:35:in `perform'