CUBN as a Novel Locus for End-Stage Renal Disease: Insights from Renal Transplantation
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{"title"=>"CUBN as a novel locus for end-stage renal disease: Insights from renal transplantation", "type"=>"journal", "authors"=>[{"first_name"=>"Anna", "last_name"=>"Reznichenko", "scopus_author_id"=>"54581426100"}, {"first_name"=>"Harold", "last_name"=>"Snieder", "scopus_author_id"=>"7006990967"}, {"first_name"=>"Jacob", "last_name"=>"van den Born", "scopus_author_id"=>"7005128547"}, {"first_name"=>"Martin H.", "last_name"=>"de Borst", "scopus_author_id"=>"7801534812"}, {"first_name"=>"Jeffrey", "last_name"=>"Damman", "scopus_author_id"=>"14053393200"}, {"first_name"=>"Marcory C.R.F.", "last_name"=>"van Dijk", "scopus_author_id"=>"7102854214"}, {"first_name"=>"Harry", "last_name"=>"van Goor", "scopus_author_id"=>"7006649823"}, {"first_name"=>"Bouke G.", "last_name"=>"Hepkema", "scopus_author_id"=>"6701502892"}, {"first_name"=>"Jan Luuk", "last_name"=>"Hillebrands", "scopus_author_id"=>"6602732589"}, {"first_name"=>"Henri G.D.", "last_name"=>"Leuvenink", "scopus_author_id"=>"6602520943"}, {"first_name"=>"Jan", "last_name"=>"Niesing", "scopus_author_id"=>"10339715600"}, {"first_name"=>"Stephan J.L.", "last_name"=>"Bakker", "scopus_author_id"=>"7006070107"}, {"first_name"=>"Marc", "last_name"=>"Seelen", "scopus_author_id"=>"6701589641"}, {"first_name"=>"Gerjan", "last_name"=>"Navis", "scopus_author_id"=>"7006576566"}], "year"=>2012, "source"=>"PLoS ONE", "identifiers"=>{"scopus"=>"2-s2.0-84860502321", "sgr"=>"84860502321", "issn"=>"19326203", "doi"=>"10.1371/journal.pone.0036512", "pmid"=>"22574174", "isbn"=>"1932-6203 (Electronic)\\r1932-6203 (Linking)", "pui"=>"364730703"}, "id"=>"8c83a4c7-120e-3184-881d-4187c79f4fba", "abstract"=>"Chronic kidney disease (CKD) is a complex disorder. As genome-wide association studies identified cubilin gene CUBN as a locus for albuminuria, and urinary protein loss is a risk factor for progressive CKD, we tested the hypothesis that common genetic variants in CUBN are associated with end-stage renal disease (ESRD) and proteinuria. First, a total of 1142 patients with ESRD, admitted for renal transplantation, and 1186 donors were genotyped for SNPs rs7918972 and rs1801239 (case-control study). The rs7918972 minor allele frequency (MAF) was higher in ESRD patients comparing to kidney donors, implicating an increased risk for ESRD (OR 1.39, p = 0.0004) in native kidneys. Second, after transplantation recipients were followed for 5.8 [3.8-9.2] years (longitudinal study) documenting ESRD in transplanted kidneys--graft failure (GF). During post-transplant follow-up 92 (9.6%) cases of death-censored GF occurred. Donor rs7918972 MAF, representing genotype of the transplanted kidney, was 16.3% in GF vs 10.7% in cases with functioning graft. Consistently, a multivariate Cox regression analysis showed that donor rs7918972 is a predictor of GF, although statistical significance was not reached (HR 1.53, p = 0.055). There was no association of recipient rs7918972 with GF. Rs1801239 was not associated with ESRD or GF. In line with an association with the outcome, donor rs7918972 was associated with elevated proteinuria levels cross-sectionally at 1 year after transplantation. Thus, we identified CUBN rs7918972 as a novel risk variant for renal function loss in two independent settings: ESRD in native kidneys and GF in transplanted kidneys.", "link"=>"http://www.mendeley.com/research/cubn-novel-locus-endstage-renal-disease-insights-renal-transplantation-2", "reader_count"=>8, "reader_count_by_academic_status"=>{"Professor > Associate Professor"=>1, "Researcher"=>2, "Student > Ph. D. Student"=>2, "Student > Master"=>1, "Student > Bachelor"=>2}, "reader_count_by_user_role"=>{"Professor > Associate Professor"=>1, "Researcher"=>2, "Student > Ph. D. Student"=>2, "Student > Master"=>1, "Student > Bachelor"=>2}, "reader_count_by_subject_area"=>{"Engineering"=>2, "Biochemistry, Genetics and Molecular Biology"=>1, "Medicine and Dentistry"=>3, "Agricultural and Biological Sciences"=>2}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>2}, "Medicine and Dentistry"=>{"Medicine and Dentistry"=>3}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>2}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>1}}, "reader_count_by_country"=>{"Netherlands"=>1}, "group_count"=>0}

Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/642232"], "description"=>"<p>OR, odds ratio; CI, confidence interval.</p>a<p>Logistic regression model adjusted for age and sex, with adjustment for case-control relatedness (DFAM algorithm).</p>", "links"=>[], "tags"=>["snps", "case-control", "esrd", "patients", "kidney"], "article_id"=>312711, "categories"=>["Biological Sciences", "Marine Biology", "Genetics", "Biotechnology", "Evolutionary Biology"], "users"=>["Anna Reznichenko", "Harold Snieder", "Jacob van den Born", "Martin H. de Borst", "Jeffrey Damman", "Marcory C. R. F. van Dijk", "Harry van Goor", "Bouke G. Hepkema", "Jan-Luuk Hillebrands", "Henri G. D. Leuvenink", "Jan Niesing", "Stephan J. L. Bakker", "Marc Seelen", "Gerjan Navis"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036512.t002", "stats"=>{"downloads"=>1, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_CUBN_SNPs_in_the_case_control_study_of_ESRD_patients_versus_kidney_donors_/312711", "title"=>"<i>CUBN</i> SNPs in the case-control study of ESRD patients versus kidney donors.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-05-04 00:45:11"}
  • {"files"=>["https://ndownloader.figshare.com/files/332076"], "description"=>"<div><p>Chronic kidney disease (CKD) is a complex disorder. As genome-wide association studies identified cubilin gene <em>CUBN</em> as a locus for albuminuria, and urinary protein loss is a risk factor for progressive CKD, we tested the hypothesis that common genetic variants in <em>CUBN</em> are associated with end-stage renal disease (ESRD) and proteinuria. First, a total of 1142 patients with ESRD, admitted for renal transplantation, and 1186 donors were genotyped for SNPs rs7918972 and rs1801239 (case-control study). The rs7918972 minor allele frequency (MAF) was higher in ESRD patients comparing to kidney donors, implicating an increased risk for ESRD (OR 1.39, <em>p</em> = 0.0004) in native kidneys. Second, after transplantation recipients were followed for 5.8 [3.8–9.2] years (longitudinal study) documenting ESRD in transplanted kidneys – graft failure (GF). During post-transplant follow-up 92 (9.6%) cases of death-censored GF occurred. Donor rs7918972 MAF, representing genotype of the transplanted kidney, was 16.3% in GF vs 10.7% in cases with functioning graft. Consistently, a multivariate Cox regression analysis showed that donor rs7918972 is a predictor of GF, although statistical significance was not reached (HR 1.53, <em>p</em> = 0.055). There was no association of recipient rs7918972 with GF. Rs1801239 was not associated with ESRD or GF. In line with an association with the outcome, donor rs7918972 was associated with elevated proteinuria levels cross-sectionally at 1 year after transplantation. Thus, we identified <em>CUBN</em> rs7918972 as a novel risk variant for renal function loss in two independent settings: ESRD in native kidneys and GF in transplanted kidneys.</p> </div>", "links"=>[], "tags"=>["locus", "end-stage", "renal", "insights", "transplantation"], "article_id"=>125559, "categories"=>["Biological Sciences", "Marine Biology", "Genetics", "Biotechnology", "Evolutionary Biology"], "users"=>["Anna Reznichenko", "Harold Snieder", "Jacob van den Born", "Martin H. de Borst", "Jeffrey Damman", "Marcory C. R. F. van Dijk", "Harry van Goor", "Bouke G. Hepkema", "Jan-Luuk Hillebrands", "Henri G. D. Leuvenink", "Jan Niesing", "Stephan J. L. Bakker", "Marc Seelen", "Gerjan Navis"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036512", "stats"=>{"downloads"=>3, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_CUBN_as_a_Novel_Locus_for_End_Stage_Renal_Disease_Insights_from_Renal_Transplantation/125559", "title"=>"<em>CUBN</em> as a Novel Locus for End-Stage Renal Disease: Insights from Renal Transplantation", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-05-04 01:32:39"}
  • {"files"=>["https://ndownloader.figshare.com/files/641920"], "description"=>"<p>A flowchart of the study participants selection.</p>", "links"=>[], "tags"=>["flowchart"], "article_id"=>312400, "categories"=>["Biological Sciences", "Marine Biology", "Genetics", "Biotechnology", "Evolutionary Biology"], "users"=>["Anna Reznichenko", "Harold Snieder", "Jacob van den Born", "Martin H. de Borst", "Jeffrey Damman", "Marcory C. R. F. van Dijk", "Harry van Goor", "Bouke G. Hepkema", "Jan-Luuk Hillebrands", "Henri G. D. Leuvenink", "Jan Niesing", "Stephan J. L. Bakker", "Marc Seelen", "Gerjan Navis"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036512.g001", "stats"=>{"downloads"=>1, "page_views"=>10, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_A_flowchart_of_the_study_participants_selection_/312400", "title"=>"A flowchart of the study participants selection.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-05-04 00:40:00"}
  • {"files"=>["https://ndownloader.figshare.com/files/642096"], "description"=>"<p>Numbers 0 to 2 designate corresponding number of the minor allele copies per genotype. The logrank test showed borderline statistical significance of the differences between the respective curves.</p>", "links"=>[], "tags"=>["renal", "graft", "rs7918972"], "article_id"=>312573, "categories"=>["Biological Sciences", "Marine Biology", "Genetics", "Biotechnology", "Evolutionary Biology"], "users"=>["Anna Reznichenko", "Harold Snieder", "Jacob van den Born", "Martin H. de Borst", "Jeffrey Damman", "Marcory C. R. F. van Dijk", "Harry van Goor", "Bouke G. Hepkema", "Jan-Luuk Hillebrands", "Henri G. D. Leuvenink", "Jan Niesing", "Stephan J. L. Bakker", "Marc Seelen", "Gerjan Navis"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036512.g002", "stats"=>{"downloads"=>4, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Curves_of_long_term_renal_graft_survival_by_donor_rs7918972_genotype_/312573", "title"=>"Curves of long-term renal graft survival by donor rs7918972 genotype.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-05-04 00:42:53"}
  • {"files"=>["https://ndownloader.figshare.com/files/642379"], "description"=>"<p>HR, hazard ratio; CI, confidence interval.</p>a<p>univariate Cox regression.</p>b<p>multivariate Cox regression model adjusted for donor and recipient age and sex, donor type (living or deceased), ischemia times, immunosuppressive medication use, and history of acute rejection episodes.</p>", "links"=>[], "tags"=>["snps", "longitudinal", "follow-up", "graft"], "article_id"=>312855, "categories"=>["Biological Sciences", "Marine Biology", "Genetics", "Biotechnology", "Evolutionary Biology"], "users"=>["Anna Reznichenko", "Harold Snieder", "Jacob van den Born", "Martin H. de Borst", "Jeffrey Damman", "Marcory C. R. F. van Dijk", "Harry van Goor", "Bouke G. Hepkema", "Jan-Luuk Hillebrands", "Henri G. D. Leuvenink", "Jan Niesing", "Stephan J. L. Bakker", "Marc Seelen", "Gerjan Navis"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036512.t004", "stats"=>{"downloads"=>1, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_CUBN_SNPs_in_the_longitudinal_study_with_follow_up_for_graft_failure_/312855", "title"=>"<i>CUBN</i> SNPs in the longitudinal study with follow-up for graft failure.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-05-04 00:47:35"}
  • {"files"=>["https://ndownloader.figshare.com/files/642282"], "description"=>"<p>Continuous normally distributed variables are presented as mean±SD, non-normally distributed – as median [IQR].</p>", "links"=>[], "tags"=>["patients", "transplantation-related"], "article_id"=>312759, "categories"=>["Biological Sciences", "Marine Biology", "Genetics", "Biotechnology", "Evolutionary Biology"], "users"=>["Anna Reznichenko", "Harold Snieder", "Jacob van den Born", "Martin H. de Borst", "Jeffrey Damman", "Marcory C. R. F. van Dijk", "Harry van Goor", "Bouke G. Hepkema", "Jan-Luuk Hillebrands", "Henri G. D. Leuvenink", "Jan Niesing", "Stephan J. L. Bakker", "Marc Seelen", "Gerjan Navis"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036512.t001", "stats"=>{"downloads"=>0, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Main_patients_and_transplantation_related_characteristics_/312759", "title"=>"Main patients and transplantation-related characteristics.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-05-04 00:45:59"}
  • {"files"=>["https://ndownloader.figshare.com/files/642185"], "description"=>"<p>Logistic regression model adjusted for age and sex. Odds ratios (OR) [95% confidence intervals] for risk of ESRD, <i>p</i>-values and patients number (n) are presented in relation to simultaneous presence of both minor alleles in genotype.</p>", "links"=>[], "tags"=>["snps", "locus", "case-control", "esrd", "patients", "kidney"], "article_id"=>312659, "categories"=>["Biological Sciences", "Marine Biology", "Genetics", "Biotechnology", "Evolutionary Biology"], "users"=>["Anna Reznichenko", "Harold Snieder", "Jacob van den Born", "Martin H. de Borst", "Jeffrey Damman", "Marcory C. R. F. van Dijk", "Harry van Goor", "Bouke G. Hepkema", "Jan-Luuk Hillebrands", "Henri G. D. Leuvenink", "Jan Niesing", "Stephan J. L. Bakker", "Marc Seelen", "Gerjan Navis"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036512.t003", "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Interaction_between_the_SNPs_in_the_CUBN_locus_in_the_case_control_study_of_ESRD_patients_versus_kidney_donors_/312659", "title"=>"Interaction between the SNPs in the <i>CUBN</i> locus in the case-control study of ESRD patients versus kidney donors.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-05-04 00:44:19"}
  • {"files"=>["https://ndownloader.figshare.com/files/642327"], "description"=>"a<p>Model adjusted for donor and recipient age and sex, donor type (living or deceased), systolic and diastolic blood pressure. Coefficients are given per copy of the minor allele.</p>", "links"=>[], "tags"=>["snps", "urinary", "excretion", "cross-sectionally"], "article_id"=>312801, "categories"=>["Biological Sciences", "Marine Biology", "Genetics", "Biotechnology", "Evolutionary Biology"], "users"=>["Anna Reznichenko", "Harold Snieder", "Jacob van den Born", "Martin H. de Borst", "Jeffrey Damman", "Marcory C. R. F. van Dijk", "Harry van Goor", "Bouke G. Hepkema", "Jan-Luuk Hillebrands", "Henri G. D. Leuvenink", "Jan Niesing", "Stephan J. L. Bakker", "Marc Seelen", "Gerjan Navis"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0036512.t005", "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_CUBN_SNPs_association_with_urinary_total_protein_excretion_cross_sectionally_at_1_year_after_transplantation_/312801", "title"=>"<i>CUBN</i> SNPs association with urinary total protein excretion cross-sectionally at 1 year after transplantation.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-05-04 00:46:41"}

PMC Usage Stats | Further Information

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Relative Metric

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