Defining an Adequate Sample of Earlywood Vessels for Retrospective Injury Detection in Diffuse-Porous Species
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{"title"=>"Defining an adequate sample of earlywood vessels for retrospective injury detection in diffuse-porous species", "type"=>"journal", "authors"=>[{"first_name"=>"Estelle", "last_name"=>"Arbellay", "scopus_author_id"=>"35769137500"}, {"first_name"=>"Christophe", "last_name"=>"Corona", "scopus_author_id"=>"36143932300"}, {"first_name"=>"Markus", "last_name"=>"Stoffel", "scopus_author_id"=>"7102900542"}, {"first_name"=>"Patrick", "last_name"=>"Fonti", "scopus_author_id"=>"6602360450"}, {"first_name"=>"Armelle", "last_name"=>"Decaulne", "scopus_author_id"=>"6505929758"}], "year"=>2012, "source"=>"PLoS ONE", "identifiers"=>{"pmid"=>"22761707", "issn"=>"19326203", "doi"=>"10.1371/journal.pone.0038824", "pui"=>"365093314", "isbn"=>"1932-6203", "scopus"=>"2-s2.0-84862736692", "sgr"=>"84862736692"}, "id"=>"e5f37d1a-87fe-3bf9-9257-29550f3fd0da", "abstract"=>"Vessels of broad-leaved trees have been analyzed to study how trees deal with various environmental factors. Cambial injury, in particular, has been reported to induce the formation of narrower conduits. Yet, little or no effort has been devoted to the elaboration of vessel sampling strategies for retrospective injury detection based on vessel lumen size reduction. To fill this methodological gap, four wounded individuals each of grey alder (Alnus incana (L.) Moench) and downy birch (Betula pubescens Ehrh.) were harvested in an avalanche path. Earlywood vessel lumina were measured and compared for each tree between the injury ring built during the growing season following wounding and the control ring laid down the previous year. Measurements were performed along a 10 mm wide radial strip, located directly next to the injury. Specifically, this study aimed at (i) investigating the intra-annual duration and local extension of vessel narrowing close to the wound margin and (ii) identifying an adequate sample of earlywood vessels (number and intra-ring location of cells) attesting to cambial injury. Based on the results of this study, we recommend analyzing at least 30 vessels in each ring. Within the 10 mm wide segment of the injury ring, wound-induced reduction in vessel lumen size did not fade with increasing radial and tangential distances, but we nevertheless advise favoring early earlywood vessels located closest to the injury. These findings, derived from two species widespread across subarctic, mountainous, and temperate regions, will assist retrospective injury detection in Alnus, Betula, and other diffuse-porous species as well as future related research on hydraulic implications after wounding.", "link"=>"http://www.mendeley.com/research/defining-adequate-sample-earlywood-vessels-retrospective-injury-detection-diffuseporous-species", "reader_count"=>18, "reader_count_by_academic_status"=>{"Unspecified"=>3, "Professor > Associate Professor"=>1, "Researcher"=>8, "Student > Doctoral Student"=>1, "Student > Ph. D. Student"=>1, "Student > Master"=>1, "Other"=>2, "Lecturer"=>1}, "reader_count_by_user_role"=>{"Unspecified"=>3, "Professor > Associate Professor"=>1, "Researcher"=>8, "Student > Doctoral Student"=>1, "Student > Ph. D. Student"=>1, "Student > Master"=>1, "Other"=>2, "Lecturer"=>1}, "reader_count_by_subject_area"=>{"Unspecified"=>6, "Environmental Science"=>4, "Agricultural and Biological Sciences"=>6, "Social Sciences"=>1, "Earth and Planetary Sciences"=>1}, "reader_count_by_subdiscipline"=>{"Social Sciences"=>{"Social Sciences"=>1}, "Earth and Planetary Sciences"=>{"Earth and Planetary Sciences"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>6}, "Unspecified"=>{"Unspecified"=>6}, "Environmental Science"=>{"Environmental Science"=>4}}, "reader_count_by_country"=>{"Poland"=>1}, "group_count"=>2}

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/618764"], "description"=>"<p>The average vessel lumen area (AVLA), the average vessel lumen diameter (AVLD), and the number of vessels (VN) were calculated in the injury ring built during the growing season following wounding and in the control ring laid down the previous year. Changes (%) in vessel lumen size between the two rings were tested for significance with one-way ANOVA, performed for each tree using the non-averaged lumen area/diameter of all the vessels analyzed.</p>", "links"=>[], "tags"=>["anova", "individuals"], "article_id"=>289256, "categories"=>["Plant Biology"], "users"=>["Estelle Arbellay", "Christophe Corona", "Markus Stoffel", "Patrick Fonti", "Armelle Decaulne"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0038824.t001", "stats"=>{"downloads"=>1, "page_views"=>10, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_One_way_ANOVA_results_for_the_eight_individuals_investigated_/289256", "title"=>"One-way ANOVA results for the eight individuals investigated.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-20 03:25:14"}
  • {"files"=>["https://ndownloader.figshare.com/files/618562"], "description"=>"<p>Sample depth values were considered optimal when vessel sampling showed 95 to 100% of significant <i>P</i>-values (Wilcoxon-Mann-Whitney test, * <i>P</i><0.05, ** <i>P</i><0.01, *** <i>P</i><0.001). <i>P</i>-value percentage calculations were independently performed within the whole earlywood (WE), the early earlywood (EE), and the late earlywood (LE). Graphs show percentage of significant <i>P</i>-values as a function of sample depth for each individual when considering WE and <i>P</i><0.01 (cf. grey column in tables).</p>", "links"=>[], "tags"=>["individuals"], "article_id"=>289053, "categories"=>["Plant Biology"], "users"=>["Estelle Arbellay", "Christophe Corona", "Markus Stoffel", "Patrick Fonti", "Armelle Decaulne"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0038824.g002", "stats"=>{"downloads"=>1, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Adequate_sample_depth_for_the_eight_individuals_investigated_/289053", "title"=>"Adequate sample depth for the eight individuals investigated.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-20 03:24:04"}
  • {"files"=>["https://ndownloader.figshare.com/files/618469"], "description"=>"<p>Cambial injury occurred during the winter of 2006–2007 and trees were harvested in summer 2010. Earlywood vessels were measured in the injury ring (ir) built during the growing season following wounding and in the control ring laid down the previous year. Tree rings in diffuse-porous species consist almost entirely of earlywood, subdivided here in early earlywood (EE) and late earlywood (LE), whereas latewood (lw) is confined to a very narrow terminal zone mostly made of ground tissue. In both rings, measurements were performed over the whole earlywood within a tangential distance of 10 mm from the wound margin (star).</p>", "links"=>[], "tags"=>["earlywood"], "article_id"=>288958, "categories"=>["Plant Biology"], "users"=>["Estelle Arbellay", "Christophe Corona", "Markus Stoffel", "Patrick Fonti", "Armelle Decaulne"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0038824.g001", "stats"=>{"downloads"=>2, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Cambial_injury_and_analysis_of_earlywood_vessels_/288958", "title"=>"Cambial injury and analysis of earlywood vessels.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-20 03:23:31"}
  • {"files"=>["https://ndownloader.figshare.com/files/618663"], "description"=>"<p>Sample depth values were considered optimal when vessel sampling showed 95 to 100% of significant <i>P</i>-values (Wilcoxon-Mann-Whitney test, <i>P</i><0.05, <i>P</i><0.01, <i>P</i><0.001). The 10 mm wide segment investigated in both study rings was divided into 10 portions according to two radial classes (EE, early earlywood and LE, late earlywood) and to five tangential classes (5×2 mm). In each portion of the segment, <i>P</i>-value percentage calculations were computed on subsets of (a) 10, (b) 20, and (c) 30 vessels.</p>", "links"=>[], "tags"=>["individuals"], "article_id"=>289157, "categories"=>["Plant Biology"], "users"=>["Estelle Arbellay", "Christophe Corona", "Markus Stoffel", "Patrick Fonti", "Armelle Decaulne"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0038824.g003", "stats"=>{"downloads"=>4, "page_views"=>69, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Adequate_sample_depth_and_adequate_sample_location_for_two_representative_individuals_per_species_/289157", "title"=>"Adequate sample depth and adequate sample location for two representative individuals per species.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-20 03:24:40"}

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  • {"unique-ip"=>"1", "full-text"=>"1", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2020", "month"=>"7"}
  • {"unique-ip"=>"4", "full-text"=>"6", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2020", "month"=>"8"}
  • {"unique-ip"=>"4", "full-text"=>"1", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2020", "month"=>"9"}
  • {"unique-ip"=>"7", "full-text"=>"4", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2020", "month"=>"10"}

Relative Metric

{"start_date"=>"2012-01-01T00:00:00Z", "end_date"=>"2012-12-31T00:00:00Z", "subject_areas"=>[{"subject_area"=>"/Biology and life sciences", "average_usage"=>[322, 550, 671, 773, 864, 955, 1048, 1135, 1223, 1308, 1387, 1465, 1534, 1602, 1673, 1744, 1813, 1885, 1955, 2026, 2093, 2160, 2228, 2290, 2349]}, {"subject_area"=>"/Biology and life sciences/Ecology", "average_usage"=>[350, 552, 657, 754, 839, 932, 1023, 1103, 1197, 1274, 1359, 1436, 1499, 1564, 1640, 1726, 1794, 1865, 1933, 2021, 2101, 2181, 2239, 2324, 2376]}, {"subject_area"=>"/Biology and life sciences/Organisms", "average_usage"=>[331, 557, 677, 777, 868, 960, 1050, 1136, 1223, 1307, 1390, 1466, 1536, 1603, 1673, 1741, 1814, 1889, 1954, 2028, 2096, 2164, 2233, 2305, 2362]}, {"subject_area"=>"/Biology and life sciences/Paleontology", "average_usage"=>[515, 808, 907, 1032, 1129, 1219, 1316, 1426, 1532, 1602, 1675, 1771, 1798, 1933, 2015, 2088, 2152, 2219, 2280, 2360, 2453, 2503, 2615, 2712, 2807]}, {"subject_area"=>"/Biology and life sciences/Plant science", "average_usage"=>[329, 543, 667, 773, 865, 963, 1066, 1149, 1233, 1323, 1411, 1500, 1588, 1661, 1732, 1803, 1887, 1978, 2057, 2138, 2203, 2283, 2363, 2419, 2493]}, {"subject_area"=>"/Earth sciences", "average_usage"=>[368, 548, 649, 749, 833, 915, 993, 1071, 1153, 1240, 1315, 1388, 1456, 1520, 1597, 1673, 1747, 1826, 1892, 1975, 2036, 2101, 2178, 2256, 2319]}, {"subject_area"=>"/Earth sciences/Atmospheric science", "average_usage"=>[340, 544, 651, 735, 812, 877, 956, 1034, 1116, 1186, 1252, 1330, 1407, 1466, 1536, 1588, 1645, 1717, 1782, 1877, 1950, 2000, 2076, 2135, 2179]}, {"subject_area"=>"/Earth sciences/Paleontology", "average_usage"=>[512, 778, 908, 1007, 1121, 1219, 1313, 1420, 1525, 1602, 1663, 1754, 1803, 1885, 1950, 2033, 2125, 2230, 2316, 2410, 2481, 2569, 2659, 2753, 2831]}, {"subject_area"=>"/Ecology and environmental sciences", "average_usage"=>[348, 541, 638, 730, 827, 907, 993, 1074, 1152, 1232, 1310, 1379, 1442, 1507, 1576, 1648, 1715, 1786, 1854, 1926, 1991, 2059, 2125, 2181, 2249]}, {"subject_area"=>"/Ecology and environmental sciences/Ecology", "average_usage"=>[347, 547, 641, 742, 836, 927, 1016, 1099, 1184, 1267, 1348, 1418, 1484, 1555, 1631, 1705, 1788, 1843, 1917, 1985, 2052, 2115, 2190, 2258, 2333]}, {"subject_area"=>"/Ecology and environmental sciences/Paleoecology", "average_usage"=>[415, 601, 722, 808, 865, 950, 1061, 1124, 1176, 1229, 1290, 1345, 1372]}]}
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