A Multicentre Molecular Analysis of Hepatitis B and Blood-Borne Virus Coinfections in Viet Nam
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{"title"=>"A multicentre molecular analysis of hepatitis B and blood-borne virus coinfections in Viet Nam", "type"=>"journal", "authors"=>[{"first_name"=>"Linda", "last_name"=>"Dunford", "scopus_author_id"=>"25639376200"}, {"first_name"=>"Michael J.", "last_name"=>"Carr", "scopus_author_id"=>"56265408800"}, {"first_name"=>"Jonathan", "last_name"=>"Dean", "scopus_author_id"=>"57197375993"}, {"first_name"=>"Linh Thuy", "last_name"=>"Nguyen", "scopus_author_id"=>"53871827000"}, {"first_name"=>"Thu Hong", "last_name"=>"Ta Thi", "scopus_author_id"=>"53871948800"}, {"first_name"=>"Binh Thanh", "last_name"=>"Nguyen", "scopus_author_id"=>"54397469000"}, {"first_name"=>"Jeff", "last_name"=>"Connell", "scopus_author_id"=>"7201843965"}, {"first_name"=>"Suzie", "last_name"=>"Coughlan", "scopus_author_id"=>"7003282845"}, {"first_name"=>"Hien Tran", "last_name"=>"Nguyen", "scopus_author_id"=>"35509943700"}, {"first_name"=>"William W.", "last_name"=>"Hall", "scopus_author_id"=>"7402629230"}, {"first_name"=>"Lan Anh Nguyen", "last_name"=>"Thi", "scopus_author_id"=>"55250638100"}], "year"=>2012, "source"=>"PLoS ONE", "identifiers"=>{"issn"=>"19326203", "scopus"=>"2-s2.0-84862198002", "sgr"=>"84862198002", "pui"=>"364996174", "isbn"=>"1932-6203", "pmid"=>"22720022", "doi"=>"10.1371/journal.pone.0039027"}, "id"=>"73385d49-a903-342d-a36a-4492c808d9c5", "abstract"=>"Hepatitis B (HBV) infection is endemic in Viet Nam, with up to 8.4 million individuals estimated to be chronically infected. We describe results of a large, multicentre seroepidemiological and molecular study of the prevalence of HBV infection and blood-borne viral coinfections in Viet Nam. Individuals with varying risk factors for infection (n = 8654) were recruited from five centres; Ha Noi, Hai Phong, Da Nang, Khanh Hoa and Can Tho. A mean prevalence rate of 10.7% was observed and levels of HBsAg were significantly higher in injecting drug users (IDUs) (17.4%, n = 174/1000) and dialysis patients (14.3%, n = 82/575) than in lower-risk groups (9.4%; p<0.001). Coinfection with HIV was seen in 28% of HBV-infected IDUs (n = 49/174) and 15.2% of commercial sex workers (CSWs; n = 15/99). HCV infection was present in 89.8% of the HBV-HIV coinfected IDUs (n = 44/49) and 40% of HBV-HIV coinfected CSWs (n = 16/40). Anti-HDV was detected in 10.7% (n = 34/318) of HBsAg positive individuals. Phylogenetic analysis of HBV S gene (n = 187) showed a predominance of genotype B4 (82.6%); genotypes C1 (14.6%), B2 (2.7%) and C5 (0.5%) were also identified. The precore mutation G1896A was identified in 35% of all specimens, and was more frequently observed in genotype B (41%) than genotype C (3%; p<0.0001). In the immunodominant 'a' region of the surface gene, point mutations were identified in 31% (n = 58/187) of sequences, and 2.2% (n = 4/187) and 5.3% (n = 10/187) specimens contained the major vaccine escape mutations G145A/R and P120L/Q/S/T, respectively. 368 HBsAg positive individuals were genotyped for the IL28B SNP rs12979860 and no significant association between the IL28B SNP and clearance of HBsAg, HBV viral load or HBeAg was observed. This study confirms the high prevalence of HBV infection in Viet Nam and also highlights the significant levels of blood-borne virus coinfections, which have important implications for hepatitis-related morbidity and development of effective management strategies.", "link"=>"http://www.mendeley.com/research/multicentre-molecular-analysis-hepatitis-b-bloodborne-virus-coinfections-viet-nam", "reader_count"=>67, "reader_count_by_academic_status"=>{"Researcher"=>16, "Student > Doctoral Student"=>2, "Student > Ph. D. Student"=>7, "Student > Postgraduate"=>5, "Other"=>2, "Student > Master"=>5, "Student > Bachelor"=>29, "Lecturer"=>1}, "reader_count_by_user_role"=>{"Researcher"=>16, "Student > Doctoral Student"=>2, "Student > Ph. D. 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Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/324566"], "description"=>"<div><p>Hepatitis B (HBV) infection is endemic in Viet Nam, with up to 8.4 million individuals estimated to be chronically infected. We describe results of a large, multicentre seroepidemiological and molecular study of the prevalence of HBV infection and blood-borne viral coinfections in Viet Nam. Individuals with varying risk factors for infection (n = 8654) were recruited from five centres; Ha Noi, Hai Phong, Da Nang, Khanh Hoa and Can Tho. A mean prevalence rate of 10.7% was observed and levels of HBsAg were significantly higher in injecting drug users (IDUs) (17.4%, n = 174/1000) and dialysis patients (14.3%, n = 82/575) than in lower-risk groups (9.4%; <em>p</em><0.001). Coinfection with HIV was seen in 28% of HBV-infected IDUs (n = 49/174) and 15.2% of commercial sex workers (CSWs; n = 15/99). HCV infection was present in 89.8% of the HBV-HIV coinfected IDUs (n = 44/49) and 40% of HBV-HIV coinfected CSWs (n = 16/40). Anti-HDV was detected in 10.7% (n = 34/318) of HBsAg positive individuals. Phylogenetic analysis of HBV <em>S</em> gene (n = 187) showed a predominance of genotype B4 (82.6%); genotypes C1 (14.6%), B2 (2.7%) and C5 (0.5%) were also identified. The precore mutation G1896A was identified in 35% of all specimens, and was more frequently observed in genotype B (41%) than genotype C (3%; <em>p</em><0.0001). In the immunodominant ‘a’ region of the surface gene, point mutations were identified in 31% (n = 58/187) of sequences, and 2.2% (n = 4/187) and 5.3% (n = 10/187) specimens contained the major vaccine escape mutations G145A/R and P120L/Q/S/T, respectively. 368 HBsAg positive individuals were genotyped for the <em>IL28B</em> SNP rs12979860 and no significant association between the <em>IL28B</em> SNP and clearance of HBsAg, HBV viral load or HBeAg was observed. This study confirms the high prevalence of HBV infection in Viet Nam and also highlights the significant levels of blood-borne virus coinfections, which have important implications for hepatitis-related morbidity and development of effective management strategies.</p> </div>", "links"=>[], "tags"=>["multicentre", "molecular", "hepatitis", "blood-borne", "coinfections", "viet", "nam"], "article_id"=>124053, "categories"=>["Cancer", "Chemistry", "Biotechnology"], "users"=>["Linda Dunford", "Michael J. Carr", "Jonathan Dean", "Linh Thuy Nguyen", "Thu Hong Ta Thi", "Binh Thanh Nguyen", "Jeff Connell", "Suzie Coughlan", "Hien Tran Nguyen", "William W. Hall", "Lan Anh Nguyen Thi"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0039027"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/A_Multicentre_Molecular_Analysis_of_Hepatitis_B_and_Blood_Borne_Virus_Coinfections_in_Viet_Nam/124053", "title"=>"A Multicentre Molecular Analysis of Hepatitis B and Blood-Borne Virus Coinfections in Viet Nam", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-06-13 01:07:33"}
  • {"files"=>["https://ndownloader.figshare.com/files/625189"], "description"=>"<p>The map depicts the percentage HBsAg positives in Ha Noi, Hai Phong, Da Nang, Khanh Hoa and Can Tho. To the right is a graph depicting the prevalence of HBsAg in each of the study groups in the 5 study sites in Viet Nam.</p>", "links"=>[], "tags"=>["viet", "nam", "depicting", "prevalence", "hbsag"], "article_id"=>295665, "categories"=>["Infectious Diseases", "Chemistry", "Virology", "Biotechnology"], "users"=>["Linda Dunford", "Michael J. Carr", "Jonathan Dean", "Linh Thuy Nguyen", "Thu Hong Ta Thi", "Binh Thanh Nguyen", "Jeff Connell", "Suzie Coughlan", "Hien Tran Nguyen", "William W. Hall", "Lan Anh Nguyen Thi"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0039027.g001"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Map_of_Viet_Nam_Depicting_the_Prevalence_of_HBsAg_in_5_Regions_/295665", "title"=>"Map of Viet Nam Depicting the Prevalence of HBsAg in 5 Regions.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-06-13 01:34:25"}
  • {"files"=>["https://ndownloader.figshare.com/files/625361"], "description"=>"<p><b>“</b>A” represents the proportion of HBsAg positive IDUs (n = 174) also testing positive for HIV Ab/Ag and HCV Ab/Ag (n = 98) and “B” represents the proportion of HBsAg positive IDUs (n = 78) testing positive for HDV (n = 20).</p>", "links"=>[], "tags"=>["blood-borne", "viral", "coinfections", "hbsag", "intravenous"], "article_id"=>295837, "categories"=>["Infectious Diseases", "Chemistry", "Virology", "Biotechnology"], "users"=>["Linda Dunford", "Michael J. Carr", "Jonathan Dean", "Linh Thuy Nguyen", "Thu Hong Ta Thi", "Binh Thanh Nguyen", "Jeff Connell", "Suzie Coughlan", "Hien Tran Nguyen", "William W. Hall", "Lan Anh Nguyen Thi"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0039027.g002"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Percentage_of_Blood_Borne_Viral_Coinfections_in_HBsAg_Positive_Intravenous_Drug_Users_/295837", "title"=>"Percentage of Blood-Borne Viral Coinfections in HBsAg Positive Intravenous Drug Users.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-06-13 01:37:17"}
  • {"files"=>["https://ndownloader.figshare.com/files/625484"], "description"=>"<p>The taxons and branches of Vietnamese specimens whose sequences were identified in this study are coloured by sample location from Ha Noi (red), Hai Phong (orange), Da Nang (purple), Khanh Hoa (blue) and Can Tho (green). Sequence taxons are coded by population group including intravenous drug users (IDU), sex workers (SW), dialysis patients (DIAL), multiply transfused patients (MTF), military recruits (MIL), pregnant women (PRE), blood donors (BD) and elective surgery patients (SUR). <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0039027#pone-0039027-g002\" target=\"_blank\">Figure 2A</a> represents a phylogenetic analysis of genotype B sequences, including 152 sequences from HBV subtype B described in this study, with 64 reference sequences (labelled with their Genbank accession numbers and country of isolation). Branches of reference sequences from groups A, C, D, E, F, G and H are collapsed. The newly described putative subgenotype B6–B9 sequences were included and branches have been collapsed. <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0039027#pone-0039027-g002\" target=\"_blank\">Figure 2B</a> represents 26 sequences from HBV subtype C described in this study, with 73 reference sequences. Brackets denote the subgenotypes identified in this study and the number of IVVI sequences in these groups. Genbank accession numbers for the study sequences are JQ281112–JQ281258 and JQ281468–JQ281471.</p>", "links"=>[], "tags"=>["1070", "nt", "hbv", "specimens", "ivvi"], "article_id"=>295959, "categories"=>["Infectious Diseases", "Chemistry", "Virology", "Biotechnology"], "users"=>["Linda Dunford", "Michael J. Carr", "Jonathan Dean", "Linh Thuy Nguyen", "Thu Hong Ta Thi", "Binh Thanh Nguyen", "Jeff Connell", "Suzie Coughlan", "Hien Tran Nguyen", "William W. Hall", "Lan Anh Nguyen Thi"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0039027.g003"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Phylogenetic_Analysis_of_1070_nt_Region_of_the_HBV_Pol_Gene_of_Specimens_Identified_in_the_IVVI_Study_/295959", "title"=>"Phylogenetic Analysis of 1070 nt Region of the HBV <i>Pol</i> Gene of Specimens Identified in the IVVI Study.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-06-13 01:39:19"}
  • {"files"=>["https://ndownloader.figshare.com/files/625664"], "description"=>"<p>The precore stop mutation G1896A was identified in 35% (n = 82/236) of all samples and varied significantly by viral genotype, with a higher occurrence in genotype B (41%) compared to Genotype C (3%) (<i>p</i><0.001). In contrast, the basal core promoter mutations A1762T and G1764A were detected more frequently in genotype C at 49% and 51% respectively, compared to only 22% and 18% in genotype B (<i>p</i><0.0001). The mutation T1858C was identified only in genotype C viruses.</p>", "links"=>[], "tags"=>["basal", "promoter", "precore", "regions", "hbv", "genome", "genotype"], "article_id"=>296141, "categories"=>["Infectious Diseases", "Chemistry", "Virology", "Biotechnology"], "users"=>["Linda Dunford", "Michael J. Carr", "Jonathan Dean", "Linh Thuy Nguyen", "Thu Hong Ta Thi", "Binh Thanh Nguyen", "Jeff Connell", "Suzie Coughlan", "Hien Tran Nguyen", "William W. Hall", "Lan Anh Nguyen Thi"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0039027.g004"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Mutations_in_the_Basal_Core_Promoter_and_PreCore_Regions_of_the_HBV_Genome_in_Genotype_B_and_C_Viruses_/296141", "title"=>"Mutations in the Basal Core Promoter and PreCore Regions of the HBV Genome in Genotype B and C Viruses.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-06-13 01:42:21"}
  • {"files"=>["https://ndownloader.figshare.com/files/625753"], "description"=>"<p>All individuals in this cohort were serologically negative for HIV, HCV and HDV.</p>", "links"=>[], "tags"=>["rs12979860", "hbv", "viral"], "article_id"=>296235, "categories"=>["Infectious Diseases", "Chemistry", "Virology", "Biotechnology"], "users"=>["Linda Dunford", "Michael J. Carr", "Jonathan Dean", "Linh Thuy Nguyen", "Thu Hong Ta Thi", "Binh Thanh Nguyen", "Jeff Connell", "Suzie Coughlan", "Hien Tran Nguyen", "William W. Hall", "Lan Anh Nguyen Thi"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0039027.t002"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Association_of_IL28B_Genetic_Variation_at_rs12979860_with_HBV_Viral_Load_and_Serology_/296235", "title"=>"Association of <i>IL28B</i> Genetic Variation at rs12979860 with HBV Viral Load and Serology.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-06-13 01:43:55"}
  • {"files"=>["https://ndownloader.figshare.com/files/625797"], "description"=>"<p>All individuals in this cohort tested positive for HBsAg and serologically negative for HIV, HCV and HDV.</p>", "links"=>[], "tags"=>["hbv", "viral", "genotype", "hbeag", "individuals"], "article_id"=>296273, "categories"=>["Infectious Diseases", "Chemistry", "Virology", "Biotechnology"], "users"=>["Linda Dunford", "Michael J. Carr", "Jonathan Dean", "Linh Thuy Nguyen", "Thu Hong Ta Thi", "Binh Thanh Nguyen", "Jeff Connell", "Suzie Coughlan", "Hien Tran Nguyen", "William W. Hall", "Lan Anh Nguyen Thi"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0039027.t001"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Correlation_of_HBV_Viral_Load_and_Genotype_in_HBeAg_Positive_and_Negative_Individuals_n_8202_8202_217_/296273", "title"=>"Correlation of HBV Viral Load and Genotype in HBeAg Positive and Negative Individuals (n = 217).", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-06-13 01:44:33"}

PMC Usage Stats | Further Information

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Relative Metric

{"start_date"=>"2012-01-01T00:00:00Z", "end_date"=>"2012-12-31T00:00:00Z", "subject_areas"=>[{"subject_area"=>"/Biology and life sciences/Microbiology", "average_usage"=>[339, 580, 709, 814, 907, 1003, 1095, 1190, 1286, 1375, 1466, 1546, 1622, 1694, 1765, 1830, 1902, 1978, 2054, 2122, 2194, 2269, 2330, 2388, 2460]}, {"subject_area"=>"/Biology and life sciences/Organisms", "average_usage"=>[331, 557, 677, 777, 868, 960, 1050, 1136, 1223, 1307, 1390, 1466, 1536, 1603, 1673, 1741, 1814, 1889, 1954, 2028, 2096, 2164, 2233, 2305, 2362]}, {"subject_area"=>"/Medicine and health sciences", "average_usage"=>[312, 547, 668, 769, 861, 953, 1046, 1135, 1224, 1307, 1388, 1464, 1536, 1606, 1676, 1744, 1812, 1882, 1954, 2020, 2089, 2155, 2218, 2282, 2344]}, {"subject_area"=>"/Medicine and health sciences/Infectious diseases", "average_usage"=>[328, 580, 713, 821, 914, 1012, 1107, 1202, 1293, 1381, 1477, 1551, 1633, 1694, 1769, 1847, 1917, 1986, 2056, 2121, 2194, 2267, 2329, 2410, 2461]}]}
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Net::HTTPTooManyRequests

Source
Scopus
Time
2019-08-27 20:07:09 UTC
Target URL
https://api.elsevier.com/content/search/index:SCOPUS?query=DOI(10.1371%2Fjournal.pone.0039027)
Trace

/app/models/concerns/networkable.rb:21:in `get_result'
/app/models/source.rb:165:in `get_data'
/app/models/retrieval_status.rb:47:in `perform_get_data'
/app/jobs/source_job.rb:52:in `block (2 levels) in perform'
/app/jobs/source_job.rb:51:in `block in perform'
/app/jobs/source_job.rb:35:in `each'
/app/jobs/source_job.rb:35:in `perform'