Flowering Time Modulation by a Vacuolar SNARE via FLOWERING LOCUS C in Arabidopsis thaliana
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{"title"=>"Flowering time modulation by a vacuolar SNARE via FLOWERING LOCUS C in Arabidopsis thaliana", "type"=>"journal", "authors"=>[{"first_name"=>"Kazuo", "last_name"=>"Ebine", "scopus_author_id"=>"16549381900"}, {"first_name"=>"Tomohiro", "last_name"=>"Uemura", "scopus_author_id"=>"7202997914"}, {"first_name"=>"Akihiko", "last_name"=>"Nakano", "scopus_author_id"=>"7201966575"}, {"first_name"=>"Takashi", "last_name"=>"Ueda", "scopus_author_id"=>"55499192500"}], "year"=>2012, "source"=>"PLoS ONE", "identifiers"=>{"isbn"=>"1932-6203 (Electronic)\\r1932-6203 (Linking)", "pmid"=>"22848750", "doi"=>"10.1371/journal.pone.0042239", "pui"=>"365338863", "issn"=>"19326203", "sgr"=>"84864411840", "scopus"=>"2-s2.0-84864411840"}, "id"=>"d30692c9-b827-33b0-8232-64ce1ee4f02b", "abstract"=>"The transition of plant growth from vegetative to reproductive phases is one of the most important and dramatic events during the plant life cycle. In Arabidopsis thaliana, flowering promotion involves at least four genetically defined regulatory pathways, including the photoperiod-dependent, vernalization-dependent, gibberellin-dependent, and autonomous promotion pathways. Among these regulatory pathways, the vernalization-dependent and autonomous pathways are integrated by the expression of FLOWERING LOCUS C (FLC), a negative regulator of flowering; however, the upstream regulation of this locus has not been fully understood. The SYP22 gene encodes a vacuolar SNARE protein that acts in vacuolar and endocytic trafficking pathways. Loss of SYP22 function was reported to lead to late flowering in A. thaliana plants, but the mechanism has remained completely unknown. In this study, we demonstrated that the late flowering phenotype of syp22 was due to elevated expression of FLC caused by impairment of the autonomous pathway. In addition, we investigated the DOC1/BIG pathway, which is also suggested to regulate vacuolar/endosomal trafficking. We found that elevated levels of FLC transcripts accumulated in the doc1-1 mutant, and that syp22 phenotypes were exaggerated with a double syp22 doc1-1 mutation. We further demonstrated that the elevated expression of FLC was suppressed by ara6-1, a mutation in the gene encoding plant-unique Rab GTPase involved in endosomal trafficking. Our results indicated that vacuolar and/or endocytic trafficking is involved in the FLC regulation of flowering time in A. thaliana.", "link"=>"http://www.mendeley.com/research/flowering-time-modulation-vacuolar-snare-via-flowering-locus-c-arabidopsis-thaliana", "reader_count"=>32, "reader_count_by_academic_status"=>{"Professor > Associate Professor"=>3, "Student > Doctoral Student"=>4, "Researcher"=>9, "Student > Ph. D. Student"=>4, "Student > Postgraduate"=>1, "Student > Master"=>6, "Other"=>2, "Student > Bachelor"=>3}, "reader_count_by_user_role"=>{"Professor > Associate Professor"=>3, "Student > Doctoral Student"=>4, "Researcher"=>9, "Student > Ph. D. Student"=>4, "Student > Postgraduate"=>1, "Student > Master"=>6, "Other"=>2, "Student > Bachelor"=>3}, "reader_count_by_subject_area"=>{"Biochemistry, Genetics and Molecular Biology"=>2, "Agricultural and Biological Sciences"=>28, "Arts and Humanities"=>1, "Social Sciences"=>1}, "reader_count_by_subdiscipline"=>{"Social Sciences"=>{"Social Sciences"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>28}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>2}, "Arts and Humanities"=>{"Arts and Humanities"=>1}}, "reader_count_by_country"=>{"United Kingdom"=>1, "France"=>1}, "group_count"=>1}

Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/314608", "https://ndownloader.figshare.com/files/314791"], "description"=>"<div><p>The transition of plant growth from vegetative to reproductive phases is one of the most important and dramatic events during the plant life cycle. In <em>Arabidopsis thaliana</em>, flowering promotion involves at least four genetically defined regulatory pathways, including the photoperiod-dependent, vernalization-dependent, gibberellin-dependent, and autonomous promotion pathways. Among these regulatory pathways, the vernalization-dependent and autonomous pathways are integrated by the expression of <em>FLOWERING LOCUS C</em> (<em>FLC</em>), a negative regulator of flowering; however, the upstream regulation of this locus has not been fully understood. The <em>SYP22</em> gene encodes a vacuolar SNARE protein that acts in vacuolar and endocytic trafficking pathways. Loss of <em>SYP22</em> function was reported to lead to late flowering in <em>A. thaliana</em> plants, but the mechanism has remained completely unknown. In this study, we demonstrated that the late flowering phenotype of <em>syp22</em> was due to elevated expression of <em>FLC</em> caused by impairment of the autonomous pathway. In addition, we investigated the DOC1/BIG pathway, which is also suggested to regulate vacuolar/endosomal trafficking. We found that elevated levels of <em>FLC</em> transcripts accumulated in the <em>doc1-1</em> mutant, and that <em>syp22</em> phenotypes were exaggerated with a double <em>syp22 doc1-1</em> mutation. We further demonstrated that the elevated expression of <em>FLC</em> was suppressed by <em>ara6-1</em>, a mutation in the gene encoding plant-unique Rab GTPase involved in endosomal trafficking. Our results indicated that vacuolar and/or endocytic trafficking is involved in the <em>FLC</em> regulation of flowering time in <em>A. thaliana</em>.</p> </div>", "links"=>[], "tags"=>["flowering", "modulation", "vacuolar", "snare", "locus"], "article_id"=>122061, "categories"=>["Cell Biology"], "users"=>["Kazuo Ebine", "Tomohiro Uemura", "Akihiko Nakano", "Takashi Ueda"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0042239.s001", "https://dx.doi.org/10.1371/journal.pone.0042239.s002"], "stats"=>{"downloads"=>2, "page_views"=>11, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Flowering_Time_Modulation_by_a_Vacuolar_SNARE_via_FLOWERING_LOCUS_C_in_Arabidopsis_thaliana_/122061", "title"=>"Flowering Time Modulation by a Vacuolar SNARE via <em>FLOWERING LOCUS C</em> in <em>Arabidopsis thaliana</em>", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2012-07-27 00:34:21"}
  • {"files"=>["https://ndownloader.figshare.com/files/602245"], "description"=>"<p>(A) Wild type (WT), <i>syp22-1, flc-3</i>, and <i>flc-3 syp22-1</i> plants were grown in CL for 30 days at 23°C. (B) Numbers of rosette leaves are shown for wild type (WT) and mutant plants grown under the same conditions as those in (A). Results are presented as means ±S.D. (n = 6 or 7 plants). The <i>flc-3</i> mutation suppressed only the late flowering phenotype of the <i>syp22-1</i> phenotypes.</p>", "links"=>[], "tags"=>["flowering", "phenotype", "was", "suppressed"], "article_id"=>272739, "categories"=>["Cell Biology", "Plant Biology"], "users"=>["Kazuo Ebine", "Tomohiro Uemura", "Akihiko Nakano", "Takashi Ueda"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0042239.g005", "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_late_flowering_phenotype_of_syp22_1_was_suppressed_by_flc_3_/272739", "title"=>"The late flowering phenotype of <i>syp22-1</i> was suppressed by <i>flc-3</i>.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-07-27 00:45:39"}
  • {"files"=>["https://ndownloader.figshare.com/files/601746"], "description"=>"<p>(A) Wild-type (Columbia, left) and the <i>syp22-1</i> mutant (right) were grown in continuous light (CL) at 23°C for 30 days; (B) The <i>syp22-1</i> mutant is shown after 42 days. (C) <i>syp22-1</i> mutant grown under short-day conditions (SD). (D, E) Phenotypes of <i>syp22-1</i> grown under low temperature (16°C ) conditions. <i>syp22-1</i> exhibited conversion of floral meristems to inflorescence meristems under SD or low-temperature conditions (C, D, arrowheads). Aerial rosettes were also observed when grown under low-temperature condition (E, arrows).</p>", "links"=>[], "tags"=>["mutant", "showed", "abnormal", "floral", "meristem"], "article_id"=>272236, "categories"=>["Cell Biology", "Plant Biology"], "users"=>["Kazuo Ebine", "Tomohiro Uemura", "Akihiko Nakano", "Takashi Ueda"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0042239.g001", "stats"=>{"downloads"=>1, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_syp22_1_mutant_plant_showed_abnormal_floral_meristem_identity_/272236", "title"=>"The <i>syp22-1</i> mutant plant showed abnormal floral meristem identity.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-07-27 00:37:16"}
  • {"files"=>["https://ndownloader.figshare.com/files/601958"], "description"=>"<p>(A) Morphology around shoot apical meristems of wild type (left, top) and mutant plants. The <i>lfy-2 syp22-1</i> double mutant (middle, bottom) exhibited a phenotype similar to that of <i>lfy-1</i> (right, top). (B) Numbers of proximal 15 lateral organs in wild type and mutants. Results are presented as the means ±S.D. (n = 12 plants). The <i>syp22-1</i> mutation alone did not markedly affect lateral organ identity, but it strongly promoted the transformation from flowers to inflorescences, when combined with the <i>lfy-2</i> mutation.</p>", "links"=>[], "tags"=>["mutation", "synergistically", "aggravated"], "article_id"=>272451, "categories"=>["Cell Biology", "Plant Biology"], "users"=>["Kazuo Ebine", "Tomohiro Uemura", "Akihiko Nakano", "Takashi Ueda"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0042239.g002", "stats"=>{"downloads"=>1, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_syp22_1_mutation_synergistically_aggravated_the_lfy_2_mutation_/272451", "title"=>"The <i>syp22-1</i> mutation synergistically aggravated the <i>lfy-2</i> mutation.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-07-27 00:40:51"}
  • {"files"=>["https://ndownloader.figshare.com/files/602164"], "description"=>"<p>The expression levels of <i>FLC, FT, LFY,</i> and <i>SOC1</i> in 14-day-old wild type (WT), <i>syp22-1</i>, and <i>fve-4</i> seedlings were examined by qRT-PCR. In <i>syp22-1</i> plants, expression levels of <i>FLC</i> were elevated, which resulted in downregulation of downstream flowering pathway integrators. <i>fve-4</i>, an autonomous pathway mutant, was used as a control. Results are presented as means ±S.D. (n = 3–12).</p>", "links"=>[], "tags"=>["was", "elevated"], "article_id"=>272657, "categories"=>["Cell Biology", "Plant Biology"], "users"=>["Kazuo Ebine", "Tomohiro Uemura", "Akihiko Nakano", "Takashi Ueda"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0042239.g004", "stats"=>{"downloads"=>1, "page_views"=>9, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Expression_level_of_FLC_was_elevated_in_syp22_1_mutants_/272657", "title"=>"Expression level of <i>FLC</i> was elevated in <i>syp22-1</i> mutants.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-07-27 00:44:17"}
  • {"files"=>["https://ndownloader.figshare.com/files/602102"], "description"=>"<p>(A) The number of rosette leaves in wild type (WT) and <i>syp22-1</i> mutants treated with (red) or without (blue) GA<sub>3</sub>. Results are presented as the means ±S.D. (n = 6 plants). (B) The total leaf numbers in wild type and <i>syp22-1</i> under SD with (red) or without (blue) vernalization. Results are presented as the means ±S.D. (n = 17 plants for SD and n = 10 plants for SD+ vernalization). Flowering of <i>syp22-1</i> was delayed in SD, which was suppressed by vernalization treatment (8 weeks at 4°C).</p>", "links"=>[], "tags"=>["mutant", "responded", "gibberellic", "photoperiodic", "flowering", "vernalization"], "article_id"=>272591, "categories"=>["Cell Biology", "Plant Biology"], "users"=>["Kazuo Ebine", "Tomohiro Uemura", "Akihiko Nakano", "Takashi Ueda"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0042239.g003", "stats"=>{"downloads"=>1, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_syp22_1_mutant_responded_normally_to_gibberellic_acid_photoperiodic_flowering_induction_and_vernalization_treatment_/272591", "title"=>"The <i>syp22-1</i> mutant responded normally to gibberellic acid, photoperiodic flowering induction, and vernalization treatment.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-07-27 00:43:11"}
  • {"files"=>["https://ndownloader.figshare.com/files/602426"], "description"=>"<p>(A) Wild type (WT), <i>syp22-1, doc1-1</i>, and <i>doc1-1 syp22-1</i> plants were grown in CL for 30 days at 23°C. (B) <i>doc1-1 syp22-1</i> plants grown in CL for 41 days at 23°C. (C) Numbers of rosette leaves (blue) and expression levels of <i>FLC</i> (red) are shown for wild type (WT), <i>syp22-1, doc1-1</i>, and <i>doc1-1syp22-1</i> plants grown in CL at 23°C. Results are presented as means ±S.D. (n = 8 plants, 3 experiments of qRT-PCR). Results of qRT-PCR of <i>FLC</i> were normalized by the expression of <i>TUA3</i>. (D) The elevated expression level of <i>FLC</i> in <i>syp22-1</i> was suppressed by the <i>ara6-1</i> mutation. Expression levels of <i>FLC</i> in 14-day-old wild type (WT), <i>syp22-1</i>, and <i>ara6-1syp22-1</i> seedlings were examined by qRT-PCR. Results are presented as means ±S.D. (n = 5 experiments).</p>", "links"=>[], "tags"=>["mutations"], "article_id"=>272924, "categories"=>["Cell Biology", "Plant Biology"], "users"=>["Kazuo Ebine", "Tomohiro Uemura", "Akihiko Nakano", "Takashi Ueda"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0042239.g006", "stats"=>{"downloads"=>0, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Effect_of_doc1_1_and_ara6_1_mutations_on_expression_of_FLC_in_syp22_1_/272924", "title"=>"Effect of <i>doc1-1</i> and <i>ara6-1</i> mutations on expression of <i>FLC</i> in <i>syp22-1</i>.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-07-27 00:48:44"}

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Relative Metric

{"start_date"=>"2012-01-01T00:00:00Z", "end_date"=>"2012-12-31T00:00:00Z", "subject_areas"=>[{"subject_area"=>"/Biology and life sciences/Organisms", "average_usage"=>[331, 557, 677, 777, 868, 960, 1050, 1136, 1223, 1307, 1390, 1466, 1536, 1603, 1673, 1741, 1814, 1889, 1954, 2028, 2096, 2164, 2233, 2305, 2362]}, {"subject_area"=>"/Biology and life sciences/Plant science", "average_usage"=>[329, 543, 667, 773, 865, 963, 1066, 1149, 1233, 1323, 1411, 1500, 1588, 1661, 1732, 1803, 1887, 1978, 2057, 2138, 2203, 2283, 2363, 2419, 2493]}]}
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