Rhizobia with 16S rRNA and nifH Similar to Mesorhizobium huakuii but Novel recA, glnII, nodA and nodC Genes Are Symbionts of New Zealand Carmichaelinae
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{"title"=>"Rhizobia with 16S rRNA and nifH Similar to Mesorhizobium huakuii but Novel recA, glnII, nodA and nodC Genes Are Symbionts of New Zealand Carmichaelinae", "type"=>"journal", "authors"=>[{"first_name"=>"Heng Wee", "last_name"=>"Tan", "scopus_author_id"=>"55445834100"}, {"first_name"=>"Bevan S.", "last_name"=>"Weir", "scopus_author_id"=>"56276303700"}, {"first_name"=>"Noel", "last_name"=>"Carter", "scopus_author_id"=>"57197482904"}, {"first_name"=>"Peter B.", "last_name"=>"Heenan", "scopus_author_id"=>"7101779249"}, {"first_name"=>"Hayley J.", "last_name"=>"Ridgway", "scopus_author_id"=>"7005836006"}, {"first_name"=>"Euan K.", "last_name"=>"James", "scopus_author_id"=>"7202046354"}, {"first_name"=>"Janet I.", "last_name"=>"Sprent", "scopus_author_id"=>"7102085397"}, {"first_name"=>"J. Peter W.", "last_name"=>"Young", "scopus_author_id"=>"35231856200"}, {"first_name"=>"Mitchell", "last_name"=>"Andrews", "scopus_author_id"=>"36498049600"}], "year"=>2012, "source"=>"PLoS ONE", "identifiers"=>{"pmid"=>"23118889", "sgr"=>"84868299998", "pui"=>"365972040", "scopus"=>"2-s2.0-84868299998", "issn"=>"19326203", "isbn"=>"1932-6203 (Electronic)\\r1932-6203 (Linking)", "doi"=>"10.1371/journal.pone.0047677"}, "id"=>"6de05d88-019b-3fa0-a58e-65fdae82f1b6", "abstract"=>"New Zealand became geographically isolated about 80 million years ago and this separation gave rise to a unique native flora including four genera of legume, Carmichaelia, Clianthus and Montigena in the Carmichaelinae clade, tribe Galegeae, and Sophora, tribe Sophoreae, sub-family Papilionoideae. Ten bacterial strains isolated from NZ Carmichaelinae growing in natural ecosystems grouped close to the Mesorhizobium huakuii type strain in relation to their 16S rRNA and nifH gene sequences. However, the ten strains separated into four groups on the basis of their recA and glnII sequences: all groups were clearly distinct from all Mesorhizobium type strains. The ten strains separated into two groups on the basis of their nodA sequences but grouped closely together in relation to nodC sequences; all nodA and nodC sequences were novel. Seven strains selected and the M. huakuii type strain (isolated from Astragalus sinicus) produced functional nodules on Carmichaelia spp., Clianthus puniceus and A. sinicus but did not nodulate two Sophora species. We conclude that rhizobia closely related to M. huakuii on the basis of 16S rRNA and nifH gene sequences, but with variable recA and glnII genes and novel nodA and nodC genes, are common symbionts of NZ Carmichaelinae.", "link"=>"http://www.mendeley.com/research/rhizobia-16s-rrna-nifh-similar-mesorhizobium-huakuii-novel-reca-glnii-noda-nodc-genes-symbionts-new", "reader_count"=>26, "reader_count_by_academic_status"=>{"Unspecified"=>1, "Professor > Associate Professor"=>2, "Researcher"=>4, "Student > Doctoral Student"=>1, "Student > Ph. D. Student"=>8, "Student > Postgraduate"=>1, "Student > Master"=>7, "Student > Bachelor"=>1, "Professor"=>1}, "reader_count_by_user_role"=>{"Unspecified"=>1, "Professor > Associate Professor"=>2, "Researcher"=>4, "Student > Doctoral Student"=>1, "Student > Ph. D. Student"=>8, "Student > Postgraduate"=>1, "Student > Master"=>7, "Student > Bachelor"=>1, "Professor"=>1}, "reader_count_by_subject_area"=>{"Unspecified"=>1, "Biochemistry, Genetics and Molecular Biology"=>1, "Agricultural and Biological Sciences"=>20, "Computer Science"=>3, "Earth and Planetary Sciences"=>1}, "reader_count_by_subdiscipline"=>{"Earth and Planetary Sciences"=>{"Earth and Planetary Sciences"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>20}, "Computer Science"=>{"Computer Science"=>3}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>1}, "Unspecified"=>{"Unspecified"=>1}}, "reader_count_by_country"=>{"New Zealand"=>1, "Austria"=>1, "Argentina"=>1, "United States"=>2, "United Kingdom"=>1, "Australia"=>1, "France"=>1, "Indonesia"=>1}, "group_count"=>0}

Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/550029"], "description"=>"*<p>Original host: Mn = <i>Montigena novae-zelandiae</i>; Ca = <i>Carmichaelia australis</i>; Cm = <i>Carmichaelia monroi</i>; Clp = <i>Clianthus puniceus</i>.</p><p>Nod− = no plants nodulated; Nod+ = all plants nodulated; Fix+ = nitrogen fixing nodules.</p>", "links"=>[], "tags"=>["specificity", "rhizobial", "strains"], "article_id"=>220518, "categories"=>["Biological Sciences", "Microbiology", "Evolutionary Biology"], "users"=>["Heng Wee Tan", "Bevan S. Weir", "Noel Carter", "Peter B. Heenan", "Hayley J. Ridgway", "Euan K. James", "Janet I. Sprent", "J. Peter W. Young", "Mitchell Andrews"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0047677.t002", "stats"=>{"downloads"=>1, "page_views"=>10, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Host_specificity_of_rhizobial_strains_used_in_this_study_/220518", "title"=>"Host specificity of rhizobial strains used in this study.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-19 20:57:02"}
  • {"files"=>["https://ndownloader.figshare.com/files/549962"], "description"=>"<p>Ca = <i>Carmichaelia australis</i>; Cm = <i>Carmichaelia monroi</i>; Cn = <i>Carmichaelia nana</i>; Co = <i>Carmichaelia odorata</i>; Clp = <i>Clianthus puniceus</i>; Mn = <i>Montigena novae-zelandiae</i>. <b>▪</b> indicates strains focussed on in this study. Numbers on branches are bootstrap % from 500 replicates (shown only when ≥50%).</p>", "links"=>[], "tags"=>["phylogenetic", "trees", "bacterial", "strains", "zealand", "characterised", "16s", "rrna"], "article_id"=>220441, "categories"=>["Biological Sciences", "Microbiology", "Evolutionary Biology"], "users"=>["Heng Wee Tan", "Bevan S. Weir", "Noel Carter", "Peter B. Heenan", "Hayley J. Ridgway", "Euan K. James", "Janet I. Sprent", "J. Peter W. Young", "Mitchell Andrews"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0047677.g004", "stats"=>{"downloads"=>2, "page_views"=>15, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_nodA_a_and_nodC_b_gene_phylogenetic_trees_of_bacterial_strains_isolated_from_New_Zealand_native_legumes_selected_Mesorhizobium_type_strains_and_strains_characterised_as_Mesorhizobium_huakuii_on_the_basis_of_their_16S_rRNA_sequences_/220441", "title"=>"<i>nodA</i> (a) and <i>nodC</i> (b) gene phylogenetic trees of bacterial strains isolated from New Zealand native legumes, selected <i>Mesorhizobium</i> type strains and strains characterised as <i>Mesorhizobium huakuii</i> on the basis of their 16S rRNA sequences.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-19 20:56:36"}
  • {"files"=>["https://ndownloader.figshare.com/files/549872"], "description"=>"<p>Ca = <i>Carmichaelia australis</i>; Cm = <i>Carmichaelia monroi</i>; Cn = <i>Carmichaelia nana</i>; Clp = <i>Clianthus puniceus</i>; Mn = <i>Montigena novae-zelandiae</i>. <b>▪</b> indicates strains focussed on in this study. Numbers on branches are boot strap % from 500 replicates (shown only when ≥50%).</p>", "links"=>[], "tags"=>["phylogenetic", "bacterial", "strains", "zealand", "legumes"], "article_id"=>220357, "categories"=>["Biological Sciences", "Microbiology", "Evolutionary Biology"], "users"=>["Heng Wee Tan", "Bevan S. Weir", "Noel Carter", "Peter B. Heenan", "Hayley J. Ridgway", "Euan K. James", "Janet I. Sprent", "J. Peter W. Young", "Mitchell Andrews"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0047677.g003", "stats"=>{"downloads"=>1, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_nifH_gene_phylogenetic_tree_of_bacterial_strains_isolated_from_New_Zealand_native_legumes_and_selected_Mesorhizobium_type_strains_/220357", "title"=>"<i>nifH</i> gene phylogenetic tree of bacterial strains isolated from New Zealand native legumes and selected <i>Mesorhizobium</i> type strains.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-19 20:56:11"}
  • {"files"=>["https://ndownloader.figshare.com/files/549796"], "description"=>"<p>Ca = <i>Carmichaelia australis</i>; Cm = <i>Carmichaelia monroi</i>; Cn = <i>Carmichaelia nana</i>; Co = <i>Carmichaelia odorata</i>; Cp = <i>Carmichaelia petriei</i>; Clp = <i>Clianthus puniceus</i>; Mn = <i>Montigena novae-zelandiae</i>. <b>▪</b> indicates strains focussed on in this study. Numbers on branches are bootstrap % from 500 replicates (shown only when ≥50%). The trees were rooted with the <i>Bradyrhizobium elkani</i> type strain.</p>", "links"=>[], "tags"=>["phylogenetic", "trees", "bacterial", "strains", "zealand", "legumes"], "article_id"=>220278, "categories"=>["Biological Sciences", "Microbiology", "Evolutionary Biology"], "users"=>["Heng Wee Tan", "Bevan S. Weir", "Noel Carter", "Peter B. Heenan", "Hayley J. Ridgway", "Euan K. James", "Janet I. Sprent", "J. Peter W. Young", "Mitchell Andrews"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0047677.g002", "stats"=>{"downloads"=>1, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_recA_a_and_glnII_b_gene_phylogenetic_trees_of_bacterial_strains_isolated_from_New_Zealand_native_legumes_and_selected_Mesorhizobium_type_strains_/220278", "title"=>"<i>recA</i> (a) and <i>glnII</i> (b) gene phylogenetic trees of bacterial strains isolated from New Zealand native legumes and selected <i>Mesorhizobium</i> type strains.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-19 20:55:44"}
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PMC Usage Stats | Further Information

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Relative Metric

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