Birds and Viruses at a Crossroad - Surveillance of Influenza A Virus in Portuguese Waterfowl
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{"title"=>"Birds and Viruses at a Crossroad - Surveillance of Influenza A Virus in Portuguese Waterfowl", "type"=>"journal", "authors"=>[{"first_name"=>"Conny", "last_name"=>"Tolf", "scopus_author_id"=>"21834953600"}, {"first_name"=>"Daniel", "last_name"=>"Bengtsson", "scopus_author_id"=>"6506210455"}, {"first_name"=>"David", "last_name"=>"Rodrigues", "scopus_author_id"=>"15923812600"}, {"first_name"=>"Neus", "last_name"=>"Latorre-Margalef", "scopus_author_id"=>"16024886800"}, {"first_name"=>"Michelle", "last_name"=>"Wille", "scopus_author_id"=>"36572831000"}, {"first_name"=>"Maria Ester", "last_name"=>"Figueiredo", "scopus_author_id"=>"7103355271"}, {"first_name"=>"Monika", "last_name"=>"Jankowska-Hjortaas", "scopus_author_id"=>"55468940300"}, {"first_name"=>"Anna", "last_name"=>"Germundsson", "scopus_author_id"=>"6506399535"}, {"first_name"=>"Pierre Yves", "last_name"=>"Duby", "scopus_author_id"=>"55470266600"}, {"first_name"=>"Camille", "last_name"=>"Lebarbenchon", "scopus_author_id"=>"55916803500"}, {"first_name"=>"Michel", "last_name"=>"Gauthier-Clerc", "scopus_author_id"=>"6603971273"}, {"first_name"=>"Björn", "last_name"=>"Olsen", "scopus_author_id"=>"7201359257"}, {"first_name"=>"Jonas", "last_name"=>"Waldenström", "scopus_author_id"=>"7005795132"}], "year"=>2012, "source"=>"PLoS ONE", "identifiers"=>{"sgr"=>"84868686374", "doi"=>"10.1371/journal.pone.0049002", "pui"=>"366025069", "pmid"=>"23145046", "scopus"=>"2-s2.0-84868686374", "issn"=>"19326203", "isbn"=>"1932-6203 (Electronic)\\r1932-6203 (Linking)"}, "id"=>"fc3aaeea-1d87-3f48-b83e-8b049ab9b0a0", "abstract"=>"During recent years, extensive amounts of data have become available regarding influenza A virus (IAV) in wild birds in northern Europe, while information from southern Europe is more limited. Here, we present an IAV surveillance study conducted in western Portugal 2008-2009, analyzing 1653 samples from six different species of waterfowl, with the majority of samples taken from Mallards (Anas platyrhynchos). Overall 4.4% of sampled birds were infected. The sampling results revealed a significant temporal variation in the IAV prevalence, including a pronounced peak among predominantly young birds in June, indicating that IAV circulate within breeding populations in the wetlands of western Portugal. The H10N7 and H9N2 subtypes were predominant among isolated viruses. Phylogenetic analyses of the hemagglutinin and neuraminidase sequences of H10N7, H9N2 and H11N3 virus showed that sequences from Portugal were closely related to viral sequences from Central Europe as well as to IAVs isolated in the southern parts of Africa, reflecting Portugal's position on the European-African bird migratory flyway. This study highlights the importance of Portugal as a migratory crossroad for IAV, connecting breeding stationary waterfowl with birds migrating between continents which enable transmission and spread of IAV.", "link"=>"http://www.mendeley.com/research/birds-viruses-crossroad-surveillance-influenza-virus-portuguese-waterfowl", "reader_count"=>30, "reader_count_by_academic_status"=>{"Unspecified"=>2, "Professor > Associate Professor"=>2, "Researcher"=>8, "Student > Ph. D. Student"=>9, "Student > Postgraduate"=>1, "Student > Master"=>6, "Student > Bachelor"=>1, "Professor"=>1}, "reader_count_by_user_role"=>{"Unspecified"=>2, "Professor > Associate Professor"=>2, "Researcher"=>8, "Student > Ph. D. Student"=>9, "Student > Postgraduate"=>1, "Student > Master"=>6, "Student > Bachelor"=>1, "Professor"=>1}, "reader_count_by_subject_area"=>{"Unspecified"=>1, "Environmental Science"=>3, "Materials Science"=>1, "Agricultural and Biological Sciences"=>14, "Medicine and Dentistry"=>2, "Veterinary Science and Veterinary Medicine"=>3, "Business, Management and Accounting"=>1, "Psychology"=>1, "Immunology and Microbiology"=>4}, "reader_count_by_subdiscipline"=>{"Materials Science"=>{"Materials Science"=>1}, "Medicine and Dentistry"=>{"Medicine and Dentistry"=>2}, "Psychology"=>{"Psychology"=>1}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>4}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>14}, "Business, Management and Accounting"=>{"Business, Management and Accounting"=>1}, "Unspecified"=>{"Unspecified"=>1}, "Environmental Science"=>{"Environmental Science"=>3}, "Veterinary Science and Veterinary Medicine"=>{"Veterinary Science and Veterinary Medicine"=>3}}, "reader_count_by_country"=>{"Reunion"=>1, "United States"=>1, "Italy"=>2}, "group_count"=>4}

Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/547431"], "description"=>"<p>The clades containing Portuguese and North American sequences are indicated, and Portuguese isolates are shown in bold. The tree is rooted at the midpoint and numbers at nodes indicate posterior probability support. The scale bar indicates substitutions per site.</p>", "links"=>[], "tags"=>["phylogenetic", "relationships", "h10", "influenza", "viruses", "sequences"], "article_id"=>217901, "categories"=>["Microbiology", "Infectious Diseases"], "users"=>["Conny Tolf", "Daniel Bengtsson", "David Rodrigues", "Neus Latorre-Margalef", "Michelle Wille", "Maria Ester Figueiredo", "Monika Jankowska-Hjortaas", "Anna Germundsson", "Pierre-Yves Duby", "Camille Lebarbenchon", "Michel Gauthier-Clerc", "Björn Olsen", "Jonas Waldenström"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0049002.g003", "stats"=>{"downloads"=>1, "page_views"=>10, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Bayesian_phylogenetic_tree_showing_relationships_among_H10_influenza_A_viruses_isolated_in_this_study_and_publicly_available_sequences_from_GenBank_/217901", "title"=>"Bayesian phylogenetic tree showing relationships among H10 influenza A viruses isolated in this study and publicly available sequences from GenBank.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-11-07 02:11:41"}
  • {"files"=>["https://ndownloader.figshare.com/files/547794"], "description"=>"<p>The clade including the Portuguese sequences, as well as some well-established H9N2 linages (Korea, G1 and Y280) are indicated. In addition, isolates associated with infections in humans and swine have been indicated by underlining and italics, respectively. The tree is rooted at the midpoint and numbers at nodes indicate posterior probability support. The scale bar indicates substitutions per site.</p>", "links"=>[], "tags"=>["phylogenetic", "relationships", "h9", "influenza", "viruses", "sequences"], "article_id"=>218270, "categories"=>["Microbiology", "Infectious Diseases"], "users"=>["Conny Tolf", "Daniel Bengtsson", "David Rodrigues", "Neus Latorre-Margalef", "Michelle Wille", "Maria Ester Figueiredo", "Monika Jankowska-Hjortaas", "Anna Germundsson", "Pierre-Yves Duby", "Camille Lebarbenchon", "Michel Gauthier-Clerc", "Björn Olsen", "Jonas Waldenström"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0049002.g005", "stats"=>{"downloads"=>1, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Bayesian_phylogenetic_tree_showing_relationships_among_H9_influenza_A_viruses_isolated_in_this_study_and_publicly_available_sequences_from_GenBank_/218270", "title"=>"Bayesian phylogenetic tree showing relationships among H9 influenza A viruses isolated in this study and publicly available sequences from GenBank.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-11-07 02:17:50"}
  • {"files"=>["https://ndownloader.figshare.com/files/547951"], "description"=>"a<p>The sequences of two additional H9N2 viruses were determined by sequencing the viral H and N segments in the original sample.</p>b<p>Number of different subtypes identified.</p>", "links"=>[], "tags"=>["iav", "samples", "taken", "portugal"], "article_id"=>218427, "categories"=>["Microbiology", "Infectious Diseases"], "users"=>["Conny Tolf", "Daniel Bengtsson", "David Rodrigues", "Neus Latorre-Margalef", "Michelle Wille", "Maria Ester Figueiredo", "Monika Jankowska-Hjortaas", "Anna Germundsson", "Pierre-Yves Duby", "Camille Lebarbenchon", "Michel Gauthier-Clerc", "Björn Olsen", "Jonas Waldenström"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0049002.t001", "stats"=>{"downloads"=>1, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Results_from_IAV_screening_and_isolation_of_samples_taken_in_Portugal_2008_8211_2009_/218427", "title"=>"Results from IAV screening and isolation of samples taken in Portugal 2008–2009.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-11-07 02:20:27"}
  • {"files"=>["https://ndownloader.figshare.com/files/547581"], "description"=>"<p>The Portuguese sequence is shown with bold font and the clade containing North American sequences is indicated. The tree is rooted at the midpoint and numbers at nodes indicate posterior probability support. The scale bar indicates substitutions per site.</p>", "links"=>[], "tags"=>["phylogenetic", "relationships", "h11", "influenza", "viruses", "sequences"], "article_id"=>218050, "categories"=>["Microbiology", "Infectious Diseases"], "users"=>["Conny Tolf", "Daniel Bengtsson", "David Rodrigues", "Neus Latorre-Margalef", "Michelle Wille", "Maria Ester Figueiredo", "Monika Jankowska-Hjortaas", "Anna Germundsson", "Pierre-Yves Duby", "Camille Lebarbenchon", "Michel Gauthier-Clerc", "Björn Olsen", "Jonas Waldenström"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0049002.g004", "stats"=>{"downloads"=>0, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Bayesian_phylogenetic_tree_showing_relationships_among_H11_influenza_A_viruses_isolated_in_this_study_and_publicly_available_sequences_from_GenBank_/218050", "title"=>"Bayesian phylogenetic tree showing relationships among H11 influenza A viruses isolated in this study and publicly available sequences from GenBank.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-11-07 02:14:10"}
  • {"files"=>["https://ndownloader.figshare.com/files/547235"], "description"=>"<p>Different bird species and populations use different migratory routes, stop over locations, and winter locations. (B) Sampling locations in Portugal utilized in this study.</p>", "links"=>[], "tags"=>["routes", "ducks", "europe", "birds", "migrating", "areas", "wintering", "grounds"], "article_id"=>217712, "categories"=>["Microbiology", "Infectious Diseases"], "users"=>["Conny Tolf", "Daniel Bengtsson", "David Rodrigues", "Neus Latorre-Margalef", "Michelle Wille", "Maria Ester Figueiredo", "Monika Jankowska-Hjortaas", "Anna Germundsson", "Pierre-Yves Duby", "Camille Lebarbenchon", "Michel Gauthier-Clerc", "Björn Olsen", "Jonas Waldenström"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0049002.g001", "stats"=>{"downloads"=>2, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_A_General_migration_routes_of_ducks_across_Europe_58_including_birds_migrating_from_north_eastern_summer_areas_to_southern_wintering_grounds_in_Southern_Europe_and_Africa_/217712", "title"=>"(A) General migration routes of ducks across Europe [<b>58</b>], including birds migrating from north eastern summer areas to southern wintering grounds in Southern Europe, and Africa.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-11-07 02:08:32"}
  • {"files"=>["https://ndownloader.figshare.com/files/293270", "https://ndownloader.figshare.com/files/293316", "https://ndownloader.figshare.com/files/293376"], "description"=>"<div><p>During recent years, extensive amounts of data have become available regarding influenza A virus (IAV) in wild birds in northern Europe, while information from southern Europe is more limited. Here, we present an IAV surveillance study conducted in western Portugal 2008–2009, analyzing 1653 samples from six different species of waterfowl, with the majority of samples taken from Mallards (<em>Anas platyrhynchos</em>). Overall 4.4% of sampled birds were infected. The sampling results revealed a significant temporal variation in the IAV prevalence, including a pronounced peak among predominantly young birds in June, indicating that IAV circulate within breeding populations in the wetlands of western Portugal. The H10N7 and H9N2 subtypes were predominant among isolated viruses. Phylogenetic analyses of the hemagglutinin and neuraminidase sequences of H10N7, H9N2 and H11N3 virus showed that sequences from Portugal were closely related to viral sequences from Central Europe as well as to IAVs isolated in the southern parts of Africa, reflecting Portugal’s position on the European-African bird migratory flyway. This study highlights the importance of Portugal as a migratory crossroad for IAV, connecting breeding stationary waterfowl with birds migrating between continents which enable transmission and spread of IAV.</p> </div>", "links"=>[], "tags"=>["birds", "viruses", "crossroad", "influenza", "portuguese", "waterfowl"], "article_id"=>117730, "categories"=>["Cancer", "Microbiology"], "users"=>["Conny Tolf", "Daniel Bengtsson", "David Rodrigues", "Neus Latorre-Margalef", "Michelle Wille", "Maria Ester Figueiredo", "Monika Jankowska-Hjortaas", "Anna Germundsson", "Pierre-Yves Duby", "Camille Lebarbenchon", "Michel Gauthier-Clerc", "Björn Olsen", "Jonas Waldenström"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0049002.s001", "https://dx.doi.org/10.1371/journal.pone.0049002.s002", "https://dx.doi.org/10.1371/journal.pone.0049002.s003"], "stats"=>{"downloads"=>5, "page_views"=>12, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Birds_and_Viruses_at_a_Crossroad_Surveillance_of_Influenza_A_Virus_in_Portuguese_Waterfowl__/117730", "title"=>"Birds and Viruses at a Crossroad - Surveillance of Influenza A Virus in Portuguese Waterfowl", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2012-11-07 02:08:50"}
  • {"files"=>["https://ndownloader.figshare.com/files/547330"], "description"=>"<p>(A) Overall temporal variation in IAV prevalence among sampled ducks. (B) The percentage of IAV-positives among juvenile and adult ducks in Portugal. Prevalence numbers are derived from sample screenings where IAV was detected by RRT-PCR.</p>", "links"=>[], "tags"=>["iav", "prevalence", "portuguese", "ducks"], "article_id"=>217810, "categories"=>["Microbiology", "Infectious Diseases"], "users"=>["Conny Tolf", "Daniel Bengtsson", "David Rodrigues", "Neus Latorre-Margalef", "Michelle Wille", "Maria Ester Figueiredo", "Monika Jankowska-Hjortaas", "Anna Germundsson", "Pierre-Yves Duby", "Camille Lebarbenchon", "Michel Gauthier-Clerc", "Björn Olsen", "Jonas Waldenström"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0049002.g002", "stats"=>{"downloads"=>0, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Temporal_variation_in_IAV_prevalence_among_Portuguese_ducks_during_the_period_2008_8211_2009_/217810", "title"=>"Temporal variation in IAV prevalence among Portuguese ducks during the period 2008–2009.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-11-07 02:10:10"}

PMC Usage Stats | Further Information

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Relative Metric

{"start_date"=>"2012-01-01T00:00:00Z", "end_date"=>"2012-12-31T00:00:00Z", "subject_areas"=>[{"subject_area"=>"/Biology and life sciences", "average_usage"=>[322, 550, 671, 773, 864, 955, 1048, 1135, 1223, 1308, 1387, 1465, 1534, 1602, 1673, 1744, 1813, 1885, 1955, 2026, 2093, 2160, 2228, 2290, 2349]}, {"subject_area"=>"/Biology and life sciences/Molecular biology", "average_usage"=>[324, 551, 679, 782, 879, 971, 1064, 1154, 1245, 1328, 1406, 1476, 1541, 1617, 1683, 1754, 1818, 1893, 1962, 2025, 2092, 2164, 2227, 2294, 2355]}, {"subject_area"=>"/Biology and life sciences/Zoology", "average_usage"=>[360, 554, 661, 756, 829, 913, 992, 1072, 1144, 1228, 1306, 1378, 1439, 1500, 1558, 1627, 1689, 1754, 1826, 1892, 1951, 2009, 2067, 2130, 2200]}, {"subject_area"=>"/Medicine and health sciences/Pathology and laboratory medicine", "average_usage"=>[321, 553, 683, 785, 880, 973, 1072, 1162, 1249, 1336, 1425, 1504, 1574, 1642, 1711, 1785, 1852, 1923, 1987, 2050, 2129, 2192, 2259, 2325, 2393]}]}
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