Empirical Distributions of FST from Large-Scale Human Polymorphism Data
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  • {"files"=>["https://ndownloader.figshare.com/files/538309"], "description"=>"<p>The geographical regions of origins are shown for the eight populations used in this study. Intra-continental populations have the same color.</p>", "links"=>[], "tags"=>["genetics and genomics", "Computational biology", "Evolutionary biology"], "article_id"=>208817, "categories"=>["Biological Sciences", "Genetics", "Evolutionary Biology"], "users"=>["Eran Elhaik"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0049837.g001"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Map_of_the_Old_World_/208817", "title"=>"Map of the Old World.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-11-21 02:26:57"}
  • {"files"=>["https://ndownloader.figshare.com/files/538424"], "description"=>"<p>Minor allele frequency distributions for autosomal SNPs.</p>", "links"=>[], "tags"=>["allele", "distributions", "autosomal"], "article_id"=>208921, "categories"=>["Biological Sciences", "Genetics", "Evolutionary Biology"], "users"=>["Eran Elhaik"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0049837.g002"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Minor_allele_frequency_distributions_for_autosomal_SNPs_/208921", "title"=>"Minor allele frequency distributions for autosomal SNPs.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-11-21 02:28:41"}
  • {"files"=>["https://ndownloader.figshare.com/files/538515"], "description"=>"<p>Samples are organized in a three level structure of individuals, intra-continental populations, and continental populations. The relationships between the six fixation indices are depicted on the top left and follow the formulation of Eq. S1. For example, . Below are the <i>F</i>-statistics, calculated separately for autosomes, male X-chromosomes, and females X-chromosomes. The indices measuring the genetic variation between continental populations (<i>F</i><sub>CT</sub>), between intra-continental populations (<i>F</i><sub>SC</sub>), and between individuals of intra-continental populations (<i>F</i><sub>IS</sub>) are shown in bold.</p>", "links"=>[], "tags"=>["hierarchical"], "article_id"=>209020, "categories"=>["Biological Sciences", "Genetics", "Evolutionary Biology"], "users"=>["Eran Elhaik"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0049837.g003"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_An_illustration_of_a_hierarchical_F_statistics_analysis_using_eight_populations_/209020", "title"=>"An illustration of a hierarchical <i>F</i>-statistics analysis using eight populations.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-11-21 02:30:20"}
  • {"files"=>["https://ndownloader.figshare.com/files/538701"], "description"=>"<p><i>F</i><sub>ST</sub> values were obtained for (a) 2,823,367 autosomal SNPs and (b) 86,533 SNPs on the non-recombining region of the X chromosome and 1,264 SNPs on the PAR region (inset). The histograms show bin distribution as indicated on the x-axis and the cumulative distribution (line).</p>", "links"=>[], "tags"=>["locus-specific", "continental", "populations"], "article_id"=>209203, "categories"=>["Biological Sciences", "Genetics", "Evolutionary Biology"], "users"=>["Eran Elhaik"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0049837.g004"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Distribution_of_locus_specific_F_ST_in_three_continental_populations_CEU_TSI_CHB_CHD_JPT_LWK_MKK_YRI_/209203", "title"=>"Distribution of locus-specific <i>F</i><sub>ST</sub> in three continental populations (CEU+TSI, CHB+CHD+JPT, LWK+MKK+YRI).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-11-21 02:33:23"}
  • {"files"=>["https://ndownloader.figshare.com/files/538819"], "description"=>"<p>The histograms show the <i>F</i><sub>ST</sub> values for five allele frequency groups divided by their MAF.</p>", "links"=>[], "tags"=>["distributions", "maf", "groups"], "article_id"=>209315, "categories"=>["Biological Sciences", "Genetics", "Evolutionary Biology"], "users"=>["Eran Elhaik"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0049837.g005"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_F_ST_distributions_for_five_MAF_groups_a_8211_e_/209315", "title"=>"<i>F</i><sub>ST</sub> distributions for five MAF groups (a–e).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-11-21 02:35:15"}
  • {"files"=>["https://ndownloader.figshare.com/files/538897"], "description"=>"<p>The mean <i>F</i><sub>ST</sub> plotted for all MAF groups (dots), excluding the rarest ones (MAF >0.05), allows us to express the correlation between the two variables using a single linear equation (Eq. 4).</p>", "links"=>[], "tags"=>["maf"], "article_id"=>209401, "categories"=>["Biological Sciences", "Genetics", "Evolutionary Biology"], "users"=>["Eran Elhaik"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0049837.g006"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Correlating_MAF_with_F_ST_/209401", "title"=>"Correlating MAF with <i>F</i><sub>ST</sub>.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-11-21 02:36:41"}
  • {"files"=>["https://ndownloader.figshare.com/files/539004"], "description"=>"<p>Frequency distribution of coefficient of variation calculated between adjacent <i>F</i><sub>ST>threshold</sub> SNPs (line) and between random samples of <i>F</i><sub>ST SNPs (histogram) for five allele frequency groups (a–e).</sub></p>", "links"=>[], "tags"=>["coefficient", "high-"], "article_id"=>209504, "categories"=>["Biological Sciences", "Genetics", "Evolutionary Biology"], "users"=>["Eran Elhaik"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0049837.g007"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Comparing_the_coefficient_of_variation_for_high_and_low_F_ST_SNPs_/209504", "title"=>"Comparing the coefficient of variation for high- and low-<i>F</i><sub>ST</sub> SNPs.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-11-21 02:38:24"}
  • {"files"=>["https://ndownloader.figshare.com/files/539074"], "description"=>"<p>LD (<i>r<sup>2</sup></i>) in African populations is plotted as a function of physical distance on a log-scale for five allele frequency groups (a–e). To simplify the presentation, the mean and standard error of the mean <i>r<sup>2</sup></i> for the <i>F</i><sub>ST >threshold</sub> SNPs (blue) and <i>F</i><sub>ST (red) are presented for different between-SNP distances (50 bp, 100 bp, 1 kb, 5 kb, 10 kb, 50 kb, 100 kb, 500 kb, and 1000 kb). <i>F</i><sub>ST>threshold</sub> SNPs are marked as green dots.</sub></p>", "links"=>[], "tags"=>["allele", "groups"], "article_id"=>209584, "categories"=>["Biological Sciences", "Genetics", "Evolutionary Biology"], "users"=>["Eran Elhaik"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0049837.g008"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_LD_for_five_allele_frequency_groups_as_a_function_of_physical_distance_in_Africans_/209584", "title"=>"LD for five allele frequency groups as a function of physical distance in Africans.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-11-21 02:39:44"}

PMC Usage Stats | Further Information

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Relative Metric

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