Molecular Evidence Shows Low Species Diversity of Coral-Associated Hydroids in Acropora Corals
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{"title"=>"Molecular Evidence Shows Low Species Diversity of Coral-Associated Hydroids in Acropora Corals", "type"=>"journal", "authors"=>[{"first_name"=>"Silvia", "last_name"=>"Fontana", "scopus_author_id"=>"55276781700"}, {"first_name"=>"Shashank", "last_name"=>"Keshavmurthy", "scopus_author_id"=>"36717627400"}, {"first_name"=>"Hernyi Justin", "last_name"=>"Hsieh", "scopus_author_id"=>"17340625000"}, {"first_name"=>"Vianney", "last_name"=>"Denis", "scopus_author_id"=>"17434060100"}, {"first_name"=>"Chao Yang", "last_name"=>"Kuo", "scopus_author_id"=>"37761564800"}, {"first_name"=>"Chia Ming", "last_name"=>"Hsu", "scopus_author_id"=>"56329148000"}, {"first_name"=>"Julia K.L.", "last_name"=>"Leung", "scopus_author_id"=>"37761813200"}, {"first_name"=>"Wan Sen", "last_name"=>"Tsai", "scopus_author_id"=>"17339751400"}, {"first_name"=>"Carden C.", "last_name"=>"Wallace", "scopus_author_id"=>"7402176178"}, {"first_name"=>"Chaolun Allen", "last_name"=>"Chen", "scopus_author_id"=>"35232695600"}], "year"=>2012, "source"=>"PLoS ONE", "identifiers"=>{"issn"=>"19326203", "pui"=>"366195708", "doi"=>"10.1371/journal.pone.0050130", "sgr"=>"84870562413", "isbn"=>"1002901146", "pmid"=>"23209655", "scopus"=>"2-s2.0-84870562413"}, "id"=>"e649b2ba-cc46-3ad9-ae99-5174c8f84099", "abstract"=>"A novel symbiosis between scleractinians and hydroids (Zanclea spp.) was recently discovered using taxonomic approaches for hydroid species identification. In this study, we address the question whether this is a species-specific symbiosis or a cosmopolitan association between Zanclea and its coral hosts. Three molecular markers, including mitochondrial 16S and nuclear 28S ribosomal genes, and internal transcribed spacer (ITS), were utilized to examine the existence of Zanclea species from 14 Acropora species and 4 other Acroporidae genera including 142 coral samples collected from reefs in Kenting and the Penghu Islands, Taiwan, Togian Island, Indonesia, and Osprey Reef and Orpheus Island on the Great Barrier Reef, Australia. Molecular phylogenetic analyses of the 16S and 28S genes showed that Acropora-associated Zanclea was monophyletic, but the genus Zanclea was not. Analysis of the ITS, and 16S and 28S genes showed either identical or extremely low genetic diversity (with mean pairwise distances of 0.009 and 0.006 base substitutions per site for the 16S and 28S genes, respectively) among Zanclea spp. collected from diverse Acropora hosts in different geographic locations, suggesting that a cosmopolitan and probably genus-specific association occurs between Zanclea hydroids and their coral hosts.", "link"=>"http://www.mendeley.com/research/molecular-evidence-shows-low-species-diversity-coralassociated-hydroids-acropora-corals", "reader_count"=>18, "reader_count_by_academic_status"=>{"Student > Doctoral Student"=>2, "Researcher"=>7, "Student > Ph. D. Student"=>5, "Student > Postgraduate"=>1, "Student > Master"=>3}, "reader_count_by_user_role"=>{"Student > Doctoral Student"=>2, "Researcher"=>7, "Student > Ph. D. Student"=>5, "Student > Postgraduate"=>1, "Student > Master"=>3}, "reader_count_by_subject_area"=>{"Unspecified"=>1, "Environmental Science"=>1, "Agricultural and Biological Sciences"=>14, "Computer Science"=>1, "Earth and Planetary Sciences"=>1}, "reader_count_by_subdiscipline"=>{"Earth and Planetary Sciences"=>{"Earth and Planetary Sciences"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>14}, "Computer Science"=>{"Computer Science"=>1}, "Unspecified"=>{"Unspecified"=>1}, "Environmental Science"=>{"Environmental Science"=>1}}, "reader_count_by_country"=>{"Ecuador"=>1, "Taiwan"=>1, "Brazil"=>1, "Mexico"=>1, "Australia"=>1, "Kenya"=>1}, "group_count"=>0}

Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/287218", "https://ndownloader.figshare.com/files/287282"], "description"=>"<div><p>A novel symbiosis between scleractinians and hydroids (<em>Zanclea</em> spp.) was recently discovered using taxonomic approaches for hydroid species identification. In this study, we address the question whether this is a species-specific symbiosis or a cosmopolitan association between <em>Zanclea</em> and its coral hosts. Three molecular markers, including mitochondrial 16S and nuclear 28S ribosomal genes, and internal transcribed spacer (ITS), were utilized to examine the existence of <em>Zanclea</em> species from 14 <em>Acropora</em> species and 4 other Acroporidae genera including 142 coral samples collected from reefs in Kenting and the Penghu Islands, Taiwan, Togian Island, Indonesia, and Osprey Reef and Orpheus Island on the Great Barrier Reef, Australia. Molecular phylogenetic analyses of the 16S and 28S genes showed that <em>Acropora</em>-associated <em>Zanclea</em> was monophyletic, but the genus <em>Zanclea</em> was not. Analysis of the ITS, and 16S and 28S genes showed either identical or extremely low genetic diversity (with mean pairwise distances of 0.009 and 0.006 base substitutions per site for the 16S and 28S genes, respectively) among <em>Zanclea</em> spp. collected from diverse <em>Acropora</em> hosts in different geographic locations, suggesting that a cosmopolitan and probably genus-specific association occurs between <em>Zanclea</em> hydroids and their coral hosts.</p> </div>", "links"=>[], "tags"=>["molecular", "shows", "coral-associated", "hydroids", "corals"], "article_id"=>116599, "categories"=>["Inorganic Chemistry", "Genetics", "Evolutionary Biology"], "users"=>["Silvia Fontana", "Shashank Keshavmurthy", "Hernyi Justin Hsieh", "Vianney Denis", "Chao-Yang Kuo", "Chia-Ming Hsu", "Julia K. L. Leung", "Wan-Sen Tsai", "Carden C. Wallace", "Chaolun Allen Chen"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0050130.s001", "https://dx.doi.org/10.1371/journal.pone.0050130.s002"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Molecular_Evidence_Shows_Low_Species_Diversity_of_Coral_Associated_Hydroids_in_Acropora_Corals__/116599", "title"=>"Molecular Evidence Shows Low Species Diversity of Coral-Associated Hydroids in <em>Acropora</em> Corals", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2012-11-29 01:49:59"}
  • {"files"=>["https://ndownloader.figshare.com/files/537583"], "description"=>"<p>A gonozooid showing an immature medusa (A) and gastrozooid (B). Micrographs of a gastrozooid attached to the axial corallites, showing ingested food, taken with normal light (C) and blue fluorescence (D). Blue fluorescence is present in the coral and in the food, but the hydroid itself shows none. Micrographs of a mature medusa and gastrozooid attached to the coral with normal (E) and combined green-red fluorescence (F). Unlike the gastrozooid, the mature medusa shows green fluorescence. Details of immature (G) and mature (H) medusae.</p>", "links"=>[], "tags"=>["hydroids", "axial"], "article_id"=>208070, "categories"=>["Inorganic Chemistry", "Genetics", "Evolutionary Biology"], "users"=>["Silvia Fontana", "Shashank Keshavmurthy", "Hernyi Justin Hsieh", "Vianney Denis", "Chao-Yang Kuo", "Chia-Ming Hsu", "Julia K. L. Leung", "Wan-Sen Tsai", "Carden C. Wallace", "Chaolun Allen Chen"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0050130.g001"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Micrographs_showing_different_hydroids_emerging_from_Acropora_muricata_axial_corallites_/208070", "title"=>"Micrographs showing different hydroids emerging from <i>Acropora muricata</i> axial corallites.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-11-29 02:14:30"}
  • {"files"=>["https://ndownloader.figshare.com/files/537718"], "description"=>"<p>The topology was inferred using a maximum-likelihood (ML) analysis. Numbers on main branches show percentages of the SH-like value for the ML analysis and bootstrap support with 1000 repetitions for a Bayesian analysis and Neighbor-joining analysis. <i>Acropora</i>-associated <i>Zanclea</i> samples are highlighted in blue, other Scleractinia-associated hydroids are in green, and other available <i>Zanclea</i> species are in red. Nodes supporting the clade including <i>Acropora</i>-associated hydroids, all Scleractinia-associated hydroids, and all <i>Zanclea</i> species are respectively highlighted in blue, green, and red.</p>", "links"=>[], "tags"=>["16s", "28s"], "article_id"=>208206, "categories"=>["Inorganic Chemistry", "Genetics", "Evolutionary Biology"], "users"=>["Silvia Fontana", "Shashank Keshavmurthy", "Hernyi Justin Hsieh", "Vianney Denis", "Chao-Yang Kuo", "Chia-Ming Hsu", "Julia K. L. Leung", "Wan-Sen Tsai", "Carden C. Wallace", "Chaolun Allen Chen"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0050130.g002"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Phylogenetic_tree_based_on_16S_A_and_28S_B_gene_sequences_/208206", "title"=>"Phylogenetic tree based on 16S (A) and 28S (B) gene sequences.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-11-29 02:16:46"}
  • {"files"=>["https://ndownloader.figshare.com/files/537823"], "description"=>"<p>Intragroup distances (in bold) of Scleractinia-associated <i>Zanclea</i> do not overlap with interspecific distances.</p>*<p>Only 1 sequence was available for analysis.</p><p>Numbers of base substitutions per site from averaging all sequence pairs between and within groups are shown. Standard error estimates are shown in brackets.</p>", "links"=>[], "tags"=>["interspecific", "estimates", "evolutionary", "divergence", "scleractinia-associated", "pairwise", "28s"], "article_id"=>208295, "categories"=>["Inorganic Chemistry", "Genetics", "Evolutionary Biology"], "users"=>["Silvia Fontana", "Shashank Keshavmurthy", "Hernyi Justin Hsieh", "Vianney Denis", "Chao-Yang Kuo", "Chia-Ming Hsu", "Julia K. L. Leung", "Wan-Sen Tsai", "Carden C. Wallace", "Chaolun Allen Chen"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0050130.t004"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Intra_and_interspecific_estimates_of_evolutionary_divergence_between_Scleractinia_associated_Zanclea_and_other_species_expressed_as_the_pairwise_distance_based_on_28S_markers_/208295", "title"=>"Intra- and interspecific estimates of evolutionary divergence between Scleractinia-associated <i>Zanclea</i> and other species, expressed as the pairwise distance based on 28S markers.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-11-29 02:18:15"}
  • {"files"=>["https://ndownloader.figshare.com/files/537869"], "description"=>"<p>Intragroup distances (in bold) of Scleractinia-associated <i>Zanclea</i> do not overlap with interspecific distances.</p>*<p>Only 1 sequence was available for analysis.</p><p>Numbers of base substitutions per site from averaging all sequence pairs between and within groups are shown. Standard error estimates are shown in brackets.</p>", "links"=>[], "tags"=>["interspecific", "estimates", "evolutionary", "divergence", "scleractinia-associated", "pairwise", "16s"], "article_id"=>208350, "categories"=>["Inorganic Chemistry", "Genetics", "Evolutionary Biology"], "users"=>["Silvia Fontana", "Shashank Keshavmurthy", "Hernyi Justin Hsieh", "Vianney Denis", "Chao-Yang Kuo", "Chia-Ming Hsu", "Julia K. L. Leung", "Wan-Sen Tsai", "Carden C. Wallace", "Chaolun Allen Chen"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0050130.t003"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Intra_and_interspecific_estimates_of_evolutionary_divergence_between_Scleractinia_associated_Zanclea_and_other_species_expressed_as_the_pairwise_distance_based_on_16S_markers_/208350", "title"=>"Intra- and interspecific estimates of evolutionary divergence between Scleractinia-associated <i>Zanclea</i> and other species, expressed as the pairwise distance based on 16S markers.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-11-29 02:19:10"}
  • {"files"=>["https://ndownloader.figshare.com/files/537898"], "description"=>"<p>The entire sample size was amplified using ITS1, and screened for the occurrence of hydroids, detected using the presence of a specific band in the gel. Among samples with a positive result for the presence of the band, ITS1, 16S, and 28S sequences of some samples were also obtained. Numbers of samples with the presence of hydroids and the relative sequences obtained are presented. In <i>Acropora</i> samples collected at Penghu (Taiwan) and in one <i>Montipora</i> sample collected at Kenting (Taiwan), the presence of hydroids was visually detected. For these samples, we obtained the sequence of the entire ITS fragment.</p>", "links"=>[], "tags"=>["members"], "article_id"=>208393, "categories"=>["Inorganic Chemistry", "Genetics", "Evolutionary Biology"], "users"=>["Silvia Fontana", "Shashank Keshavmurthy", "Hernyi Justin Hsieh", "Vianney Denis", "Chao-Yang Kuo", "Chia-Ming Hsu", "Julia K. L. Leung", "Wan-Sen Tsai", "Carden C. Wallace", "Chaolun Allen Chen"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0050130.t002"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Information_regarding_different_Acropora_species_and_other_members_of_the_Acroporidae_collected_from_different_locations_and_analyzed_for_the_presence_of_hydroids_/208393", "title"=>"Information regarding different <i>Acropora</i> species (and other members of the Acroporidae) collected from different locations, and analyzed for the presence of hydroids.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-11-29 02:19:53"}
  • {"files"=>["https://ndownloader.figshare.com/files/537945"], "description"=>"<p>For each colony, 20 branches were collected.</p>", "links"=>[], "tags"=>["coral", "samples", "surveyed", "chinwan", "markers"], "article_id"=>208432, "categories"=>["Inorganic Chemistry", "Genetics", "Evolutionary Biology"], "users"=>["Silvia Fontana", "Shashank Keshavmurthy", "Hernyi Justin Hsieh", "Vianney Denis", "Chao-Yang Kuo", "Chia-Ming Hsu", "Julia K. L. Leung", "Wan-Sen Tsai", "Carden C. Wallace", "Chaolun Allen Chen"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0050130.t001"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Information_regarding_coral_samples_surveyed_in_situ_and_collected_from_Chinwan_Inner_Bay_CIB_Penghu_Taiwan_and_markers_used_for_each_sample_/208432", "title"=>"Information regarding coral samples surveyed <i>in situ</i> and collected from Chinwan Inner Bay (CIB), Penghu, Taiwan, and markers used for each sample.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-11-29 02:20:32"}

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Relative Metric

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