Inflammation and Immune-Related Candidate Gene Associations with Acute Lung Injury Susceptibility and Severity: A Validation Study
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{"title"=>"Inflammation and Immune-Related Candidate Gene Associations with Acute Lung Injury Susceptibility and Severity: A Validation Study", "type"=>"journal", "authors"=>[{"first_name"=>"D. Shane", "last_name"=>"O'Mahony", "scopus_author_id"=>"56249593600"}, {"first_name"=>"Bradford J.", "last_name"=>"Glavan", "scopus_author_id"=>"16230259600"}, {"first_name"=>"Tarah D.", "last_name"=>"Holden", "scopus_author_id"=>"15131634000"}, {"first_name"=>"Christie", "last_name"=>"Fong", "scopus_author_id"=>"55532845200"}, {"first_name"=>"R. Anthony", "last_name"=>"Black", "scopus_author_id"=>"7402324509"}, {"first_name"=>"Gail", "last_name"=>"Rona", "scopus_author_id"=>"25029673000"}, {"first_name"=>"Paula", "last_name"=>"Tejera", "scopus_author_id"=>"24172140000"}, {"first_name"=>"David C.", "last_name"=>"Christiani", "scopus_author_id"=>"35397343500"}, {"first_name"=>"Mark M.", "last_name"=>"Wurfel", "scopus_author_id"=>"6603463643"}], "year"=>2012, "source"=>"PLoS ONE", "identifiers"=>{"pui"=>"366296364", "sgr"=>"84871323433", "pmid"=>"23251429", "scopus"=>"2-s2.0-84871323433", "isbn"=>"1932-6203 (Electronic)\\n1932-6203 (Linking)", "doi"=>"10.1371/journal.pone.0051104", "issn"=>"19326203"}, "id"=>"64a4de54-35a7-310c-8ab6-1882018e16d2", "abstract"=>"INTRODUCTION: Common variants in genes related to inflammation, innate immunity, epithelial cell function, and angiogenesis have been reported to be associated with risks for Acute Lung Injury (ALI) and related outcomes. We tested whether previously-reported associations can be validated in an independent cohort at risk for ALI.\\n\\nMETHODS: We identified 37 genetic variants in 27 genes previously associated with ALI and related outcomes. We prepared allelic discrimination assays for 12 SNPs from 11 genes with MAF>0.05 and genotyped these SNPs in Caucasian subjects from a cohort of critically ill patients meeting criteria for the systemic inflammatory response syndrome (SIRS) followed for development of ALI, duration of mechanical ventilation, and in-hospital death. We tested for associations using additive and recessive genetic models.\\n\\nRESULTS: Among Caucasian subjects with SIRS (n = 750), we identified a nominal association between rs2069832 in IL6 and ALI susceptibility (OR(adj) 1.61; 95% confidence interval [CI], 1.04-2.48, P = 0.03). In a sensitivity analysis limiting ALI cases to those who qualified for the Acute Respiratory Distress Syndrome (ARDS), rs61330082 in NAMPT was nominally associated with risk for ARDS. In terms of ALI outcomes, SNPs in MBL2 (rs1800450) and IL8 (rs4073) were nominally associated with fewer ventilator-free days (VFDs), and SNPs in NFE2L2 (rs6721961) and NAMPT (rs61330082) were nominally associated with 28-day mortality. The directions of effect for these nominal associations were in the same direction as previously reported but none of the associations survived correction for multiple hypothesis testing.\\n\\nCONCLUSION: Although our primary analyses failed to statistically validate prior associations, our results provide some support for associations between SNPs in IL6 and NAMPT and risk for development of lung injury and for SNPs in IL8, MBL2, NFE2L2 and NAMPT with severity in ALI outcomes. These associations provide further evidence that genetic factors in genes related to immunity and inflammation contribute to ALI pathogenesis.", "link"=>"http://www.mendeley.com/research/inflammation-immunerelated-candidate-gene-associations-acute-lung-injury-susceptibility-severity-val", "reader_count"=>17, "reader_count_by_academic_status"=>{"Professor > Associate Professor"=>2, "Librarian"=>1, "Researcher"=>5, "Student > Doctoral Student"=>1, "Student > Ph. D. Student"=>3, "Student > Postgraduate"=>2, "Student > Master"=>2, "Lecturer"=>1}, "reader_count_by_user_role"=>{"Professor > Associate Professor"=>2, "Librarian"=>1, "Researcher"=>5, "Student > Doctoral Student"=>1, "Student > Ph. D. Student"=>3, "Student > Postgraduate"=>2, "Student > Master"=>2, "Lecturer"=>1}, "reader_count_by_subject_area"=>{"Unspecified"=>1, "Biochemistry, Genetics and Molecular Biology"=>1, "Medicine and Dentistry"=>9, "Agricultural and Biological Sciences"=>5, "Psychology"=>1}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>9}, "Psychology"=>{"Psychology"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>5}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>1}, "Unspecified"=>{"Unspecified"=>1}}, "reader_count_by_country"=>{"France"=>1}, "group_count"=>0}

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/524649"], "description"=>"*<p>MAF, minor allele frequency in the HapMap;</p>**<p>CEU population; EA, European American; AA, African American; Number refers to number of subjects in group of the referenced study.</p>", "links"=>[], "tags"=>["variants"], "article_id"=>195139, "categories"=>["Biological Sciences", "Genetics", "Biotechnology", "Medicine"], "users"=>["D. Shane O'Mahony", "Bradford J. Glavan", "Tarah D. Holden", "Christie Fong", "R. Anthony Black", "Gail Rona", "Paula Tejera", "David C. Christiani", "Mark M. Wurfel"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0051104.t002", "stats"=>{"downloads"=>1, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Genetic_variants_studied_/195139", "title"=>"Genetic variants studied.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-12-14 01:25:39"}
  • {"files"=>["https://ndownloader.figshare.com/files/524334"], "description"=>"<p>Subjects with suspected systemic inflammatory response syndrome (SIRS), n = 1327, were enrolled at Harborview Medical Center (HMC), Seattle, WA during the period December 2006–December 2010. In this study, we excluded non-Caucasian subjects, subjects who were found to have previous enrollment or missing data, and subjects that did not meet 3 SIRS criteria present concurrently within a 24 hour period.</p>", "links"=>[], "tags"=>["diagram"], "article_id"=>194822, "categories"=>["Biological Sciences", "Genetics", "Biotechnology", "Medicine"], "users"=>["D. Shane O'Mahony", "Bradford J. Glavan", "Tarah D. Holden", "Christie Fong", "R. Anthony Black", "Gail Rona", "Paula Tejera", "David C. Christiani", "Mark M. Wurfel"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0051104.g001", "stats"=>{"downloads"=>1, "page_views"=>2, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Flow_diagram_for_Study_design_/194822", "title"=>"Flow diagram for Study design.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-12-14 01:20:22"}
  • {"files"=>["https://ndownloader.figshare.com/files/282909", "https://ndownloader.figshare.com/files/282943", "https://ndownloader.figshare.com/files/282974", "https://ndownloader.figshare.com/files/283093", "https://ndownloader.figshare.com/files/283133", "https://ndownloader.figshare.com/files/283195"], "description"=>"<div><h3>Introduction</h3><p>Common variants in genes related to inflammation, innate immunity, epithelial cell function, and angiogenesis have been reported to be associated with risks for Acute Lung Injury (ALI) and related outcomes. We tested whether previously-reported associations can be validated in an independent cohort at risk for ALI.</p> <h3>Methods</h3><p>We identified 37 genetic variants in 27 genes previously associated with ALI and related outcomes. We prepared allelic discrimination assays for 12 SNPs from 11 genes with MAF>0.05 and genotyped these SNPs in Caucasian subjects from a cohort of critically ill patients meeting criteria for the systemic inflammatory response syndrome (SIRS) followed for development of ALI, duration of mechanical ventilation, and in-hospital death. We tested for associations using additive and recessive genetic models.</p> <h3>Results</h3><p>Among Caucasian subjects with SIRS (n = 750), we identified a nominal association between rs2069832 in <em>IL6</em> and ALI susceptibility (OR<sub>adj</sub> 1.61; 95% confidence interval [CI], 1.04–2.48, <em>P</em> = 0.03). In a sensitivity analysis limiting ALI cases to those who qualified for the Acute Respiratory Distress Syndrome (ARDS), rs61330082 in <em>NAMPT</em> was nominally associated with risk for ARDS. In terms of ALI outcomes, SNPs in <em>MBL2</em> (rs1800450) and <em>IL8</em> (rs4073) were nominally associated with fewer ventilator-free days (VFDs), and SNPs in <em>NFE2L2</em> (rs6721961) and <em>NAMPT</em> (rs61330082) were nominally associated with 28-day mortality. The directions of effect for these nominal associations were in the same direction as previously reported but none of the associations survived correction for multiple hypothesis testing.</p> <h3>Conclusion</h3><p>Although our primary analyses failed to statistically validate prior associations, our results provide some support for associations between SNPs in <em>IL6 and NAMPT</em> and risk for development of lung injury and for SNPs in <em>IL8</em>, <em>MBL2, NFE2L2</em> and <em>NAMPT</em> with severity in ALI outcomes. These associations provide further evidence that genetic factors in genes related to immunity and inflammation contribute to ALI pathogenesis.</p> </div>", "links"=>[], "tags"=>["inflammation", "immune-related", "associations", "acute", "susceptibility", "validation", "study"], "article_id"=>115787, "categories"=>["Biological Sciences", "Genetics", "Biotechnology", "Medicine"], "users"=>["D. Shane O'Mahony", "Bradford J. Glavan", "Tarah D. Holden", "Christie Fong", "R. Anthony Black", "Gail Rona", "Paula Tejera", "David C. Christiani", "Mark M. Wurfel"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0051104.s001", "https://dx.doi.org/10.1371/journal.pone.0051104.s002", "https://dx.doi.org/10.1371/journal.pone.0051104.s003", "https://dx.doi.org/10.1371/journal.pone.0051104.s004", "https://dx.doi.org/10.1371/journal.pone.0051104.s005", "https://dx.doi.org/10.1371/journal.pone.0051104.s006"], "stats"=>{"downloads"=>8, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Inflammation_and_Immune_Related_Candidate_Gene_Associations_with_Acute_Lung_Injury_Susceptibility_and_Severity_A_Validation_Study__/115787", "title"=>"Inflammation and Immune-Related Candidate Gene Associations with Acute Lung Injury Susceptibility and Severity: A Validation Study", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2012-12-14 01:36:27"}
  • {"files"=>["https://ndownloader.figshare.com/files/524536"], "description"=>"<p>Multivariate linear regression adjusted for age, sex, APACHE III score, alcohol abuse, smoking status, and history of chronic renal failure and diabetes mellitus. n = 224.</p>", "links"=>[], "tags"=>["genetics and genomics", "public health and epidemiology", "Computational biology", "Critical care and emergency medicine"], "article_id"=>195022, "categories"=>["Biological Sciences", "Genetics", "Biotechnology", "Medicine"], "users"=>["D. Shane O'Mahony", "Bradford J. Glavan", "Tarah D. Holden", "Christie Fong", "R. Anthony Black", "Gail Rona", "Paula Tejera", "David C. Christiani", "Mark M. Wurfel"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0051104.t006", "stats"=>{"downloads"=>0, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Associations_with_VFDs_/195022", "title"=>"Associations with VFDs.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-12-14 01:23:42"}
  • {"files"=>["https://ndownloader.figshare.com/files/524404"], "description"=>"<p>Multivariate logistic regression adjusted for age, sex, APACHE III score, alcohol abuse, smoking status, and history of chronic renal failure and diabetes mellitus. n = 414 (126 with ARDS).</p>", "links"=>[], "tags"=>["ards"], "article_id"=>194895, "categories"=>["Biological Sciences", "Genetics", "Biotechnology", "Medicine"], "users"=>["D. Shane O'Mahony", "Bradford J. Glavan", "Tarah D. Holden", "Christie Fong", "R. Anthony Black", "Gail Rona", "Paula Tejera", "David C. Christiani", "Mark M. Wurfel"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0051104.t005", "stats"=>{"downloads"=>1, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Associations_with_moderate_or_severe_ARDS_susceptibility_/194895", "title"=>"Associations with moderate or severe ARDS susceptibility.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-12-14 01:21:35"}
  • {"files"=>["https://ndownloader.figshare.com/files/524611"], "description"=>"<p>HWE Hardy-Weinberg equilibrium;</p>a<p>p value for the Fisher's exact test comparing genotypes for at risk controls and ALI cases.</p>", "links"=>[], "tags"=>["frequencies", "at-risk", "controls", "ali"], "article_id"=>195095, "categories"=>["Biological Sciences", "Genetics", "Biotechnology", "Medicine"], "users"=>["D. Shane O'Mahony", "Bradford J. Glavan", "Tarah D. Holden", "Christie Fong", "R. Anthony Black", "Gail Rona", "Paula Tejera", "David C. Christiani", "Mark M. Wurfel"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0051104.t003", "stats"=>{"downloads"=>8, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Genotype_frequencies_in_at_risk_controls_versus_ALI_cases_/195095", "title"=>"Genotype frequencies in at-risk controls versus ALI cases.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-12-14 01:24:55"}
  • {"files"=>["https://ndownloader.figshare.com/files/524576"], "description"=>"<p>Data is presented as mean ± SD for continuous variables and n (%) for categorical variables. P values represent results of t test comparison for difference of means for continuous variables and Fisher's exact test for frequency counts for categorical variables. IQR, interquartile range; VFD, ventilator free days; AKI, presence of acute kidney injury by AKIN score >/ = 1 with lowest creatinine during hospitalization used as baseline; Death, subject death within 28 days of admission.</p>", "links"=>[], "tags"=>["sirs", "cohort"], "article_id"=>195066, "categories"=>["Biological Sciences", "Genetics", "Biotechnology", "Medicine"], "users"=>["D. Shane O'Mahony", "Bradford J. Glavan", "Tarah D. Holden", "Christie Fong", "R. Anthony Black", "Gail Rona", "Paula Tejera", "David C. Christiani", "Mark M. Wurfel"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0051104.t001", "stats"=>{"downloads"=>1, "page_views"=>16, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_HMC_SIRS_cohort_population_characteristics_/195066", "title"=>"HMC SIRS cohort population characteristics.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-12-14 01:24:26"}
  • {"files"=>["https://ndownloader.figshare.com/files/524445"], "description"=>"<p>Multivariate logistic regression adjusted for age, sex, APACHE III score, alcohol abuse, smoking status, and history of chronic renal failure and diabetes mellitus.</p>", "links"=>[], "tags"=>["ali"], "article_id"=>194941, "categories"=>["Biological Sciences", "Genetics", "Biotechnology", "Medicine"], "users"=>["D. Shane O'Mahony", "Bradford J. Glavan", "Tarah D. Holden", "Christie Fong", "R. Anthony Black", "Gail Rona", "Paula Tejera", "David C. Christiani", "Mark M. Wurfel"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0051104.t004", "stats"=>{"downloads"=>0, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Associations_with_ALI_susceptibility_/194941", "title"=>"Associations with ALI susceptibility.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-12-14 01:22:21"}
  • {"files"=>["https://ndownloader.figshare.com/files/524490"], "description"=>"<p>Multivariate logistic regression adjusted for age, sex, APACHE III score, alcohol abuse, smoking status, and history of chronic renal failure and diabetes mellitus. n = 224 (49 non-survivors at 28 days).</p>", "links"=>[], "tags"=>["28-day", "ali-related"], "article_id"=>194975, "categories"=>["Biological Sciences", "Genetics", "Biotechnology", "Medicine"], "users"=>["D. Shane O'Mahony", "Bradford J. Glavan", "Tarah D. Holden", "Christie Fong", "R. Anthony Black", "Gail Rona", "Paula Tejera", "David C. Christiani", "Mark M. Wurfel"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0051104.t007", "stats"=>{"downloads"=>1, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Associations_with_28_day_ALI_related_mortality_/194975", "title"=>"Associations with 28-day ALI-related mortality.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-12-14 01:22:55"}

PMC Usage Stats | Further Information

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  • {"unique-ip"=>"7", "full-text"=>"9", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2016", "month"=>"1"}
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  • {"unique-ip"=>"4", "full-text"=>"1", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"1", "year"=>"2016", "month"=>"4"}
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Relative Metric

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