Control of Plant Trichome and Root-Hair Development by a Tomato (Solanum lycopersicum) R3 MYB Transcription Factor
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{"title"=>"Control of Plant Trichome and Root-Hair Development by a Tomato (Solanum lycopersicum) R3 MYB Transcription Factor", "type"=>"journal", "authors"=>[{"first_name"=>"Rumi", "last_name"=>"Tominaga-Wada", "scopus_author_id"=>"35079436100"}, {"first_name"=>"Yuka", "last_name"=>"Nukumizu", "scopus_author_id"=>"50961485000"}, {"first_name"=>"Shusei", "last_name"=>"Sato", "scopus_author_id"=>"35405087800"}, {"first_name"=>"Takuji", "last_name"=>"Wada", "scopus_author_id"=>"35595287600"}], "year"=>2013, "source"=>"PLoS ONE", "identifiers"=>{"issn"=>"19326203", "pui"=>"368101450", "sgr"=>"84872257161", "doi"=>"10.1371/journal.pone.0054019", "scopus"=>"2-s2.0-84872257161", "isbn"=>"1932-6203 (Electronic)\\n1932-6203 (Linking)", "pmid"=>"23326563"}, "id"=>"3a1fb9e1-8b05-3f39-bfc2-4ac1ddc5ca6f", "abstract"=>"In Arabidopsis thaliana the CPC-like MYB transcription factors [CAPRICE (CPC), TRIPTYCHON (TRY), ENHANCER OF TRY AND CPC 1, 2, 3/CPC-LIKE MYB 3 (ETC1, ETC2, ETC3/CPL3), TRICHOMELESS 1, 2/CPC-LIKE MYB 4 (TCL1, TCL2/CPL4)] and the bHLH transcription factors [GLABRA3 (GL3) and ENHANCER OF GLABRA 3 (EGL3)] are central regulators of trichome and root-hair development. We identified TRY and GL3 homologous genes from the tomato genome and named them SlTRY and SlGL3, respectively. Phylogenic analyses revealed a close relationship between the tomato and Arabidopsis genes. Real-time reverse transcription PCR analyses showed that SlTRY and SlGL3 were predominantly expressed in aerial parts of developing tomato. After transformation into Arabidopsis, CPC::SlTRY inhibited trichome formation and enhanced root-hair differentiation by strongly repressing GL2 expression. On the other hand, GL3::SlGL3 transformation did not show any obvious effect on trichome or non-hair cell differentiation. These results suggest that tomato and Arabidopsis partially use similar transcription factors for epidermal cell differentiation, and that a CPC-like R3 MYB may be a key common regulator of plant trichome and root-hair development.", "link"=>"http://www.mendeley.com/research/control-plant-trichome-roothair-development-tomato-solanum-lycopersicum-r3-myb-transcription-factor", "reader_count"=>45, "reader_count_by_academic_status"=>{"Unspecified"=>1, "Professor > Associate Professor"=>3, "Student > Doctoral Student"=>5, "Researcher"=>6, "Student > Ph. D. Student"=>14, "Student > Postgraduate"=>3, "Student > Master"=>5, "Other"=>1, "Student > Bachelor"=>5, "Lecturer > Senior Lecturer"=>1, "Professor"=>1}, "reader_count_by_user_role"=>{"Unspecified"=>1, "Professor > Associate Professor"=>3, "Student > Doctoral Student"=>5, "Researcher"=>6, "Student > Ph. D. Student"=>14, "Student > Postgraduate"=>3, "Student > Master"=>5, "Other"=>1, "Student > Bachelor"=>5, "Lecturer > Senior Lecturer"=>1, "Professor"=>1}, "reader_count_by_subject_area"=>{"Engineering"=>1, "Unspecified"=>1, "Environmental Science"=>2, "Biochemistry, Genetics and Molecular Biology"=>7, "Agricultural and Biological Sciences"=>34}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>34}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>7}, "Unspecified"=>{"Unspecified"=>1}, "Environmental Science"=>{"Environmental Science"=>2}}, "reader_count_by_country"=>{"Belgium"=>1}, "group_count"=>0}

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/277150"], "description"=>"<div><p>In <em>Arabidopsis thaliana</em> the CPC-like MYB transcription factors [CAPRICE (CPC), TRIPTYCHON (TRY), ENHANCER OF TRY AND CPC 1, 2, 3/CPC-LIKE MYB 3 (ETC1, ETC2, ETC3/CPL3), TRICHOMELESS 1, 2/CPC-LIKE MYB 4 (TCL1, TCL2/CPL4)] and the bHLH transcription factors [GLABRA3 (GL3) and ENHANCER OF GLABRA 3 (EGL3)] are central regulators of trichome and root-hair development. We identified <em>TRY</em> and <em>GL3</em> homologous genes from the tomato genome and named them <em>SlTRY</em> and <em>SlGL3,</em> respectively. Phylogenic analyses revealed a close relationship between the tomato and Arabidopsis genes. Real-time reverse transcription PCR analyses showed that <em>SlTRY</em> and <em>SlGL3</em> were predominantly expressed in aerial parts of developing tomato. After transformation into Arabidopsis, <em>CPC::SlTRY</em> inhibited trichome formation and enhanced root-hair differentiation by strongly repressing <em>GL2</em> expression. On the other hand, <em>GL3::SlGL3</em> transformation did not show any obvious effect on trichome or non-hair cell differentiation. These results suggest that tomato and Arabidopsis partially use similar transcription factors for epidermal cell differentiation, and that a CPC-like R3 MYB may be a key common regulator of plant trichome and root-hair development.</p> </div>", "links"=>[], "tags"=>["trichome", "root-hair", "r3", "myb", "transcription", "factor"], "article_id"=>114637, "categories"=>["Biotechnology", "Genetics", "Developmental Biology", "Cell Biology"], "users"=>["Rumi Tominaga-Wada", "Yuka Nukumizu", "Shusei Sato", "Takuji Wada"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0054019", "stats"=>{"downloads"=>1, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Control_of_Plant_Trichome_and_Root_Hair_Development_by_a_Tomato_Solanum_lycopersicum_R3_MYB_Transcription_Factor__/114637", "title"=>"Control of Plant Trichome and Root-Hair Development by a Tomato (<em>Solanum lycopersicum</em>) R3 MYB Transcription Factor", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-01-11 01:17:17"}
  • {"files"=>["https://ndownloader.figshare.com/files/510098"], "description"=>"<p>Real-time reverse transcription PCR analyses of the <i>GL2</i> gene in wild-type Col-0 and <i>CPC</i>::<i>SlGL3</i> (#1, #2, #3, #4 and #5) (A), and wild-type Col-0, <i>gl3-7454</i> mutant and <i>CPC</i>::<i>SlGL3</i> in <i>gl3-7454</i> (#1, #2, #3, #4 and #5) (B). Expression levels were normalized to <i>Act2</i> expression. An expression level of <i>GL2</i> in each line relative to that in wild-type was indicated. The experiments were repeated three times. Error bars indicate the standard error. Bars marked with asterisks indicate a significant difference between the wild-type Col-0 and the transgenic lines (A), or the <i>gl3-7454</i> mutant and the transgenic lines (B) by Student’s <i>t</i>-test (P<0.050).</p>", "links"=>[], "tags"=>["transgenic"], "article_id"=>180597, "categories"=>["Biotechnology", "Genetics", "Developmental Biology", "Plant Biology"], "users"=>["Rumi Tominaga-Wada", "Yuka Nukumizu", "Shusei Sato", "Takuji Wada"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0054019.g007", "stats"=>{"downloads"=>0, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_GL2_expression_in_CPC_SlGL3_transgenic_plants_/180597", "title"=>"<i>GL2</i> expression in <i>CPC::SlGL3</i> transgenic plants.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-01-11 00:09:57"}
  • {"files"=>["https://ndownloader.figshare.com/files/509679"], "description"=>"<p>(A) Real-time reverse transcription PCR analysis of <i>SlTRY</i> gene expression in tomato organs. (B) Real-time reverse transcription PCR analysis of <i>SlGL3</i> gene expression in tomato organs. Total RNA was isolated from the indicated tissues from 7-day-old seedlings and 5-week-old plants. Expression levels of <i>SlTRY</i> and <i>SlGL3</i> in each organ relative to those in the seedling root were shown. The experiments were repeated three times. Error bars indicate the standard error. Bars marked with asterisks indicate a significant difference between the seedling root and the other organs by Student’s <i>t</i>-test (P<0.050).</p>", "links"=>[], "tags"=>["genetics and genomics", "plant biology", "biotechnology", "developmental biology"], "article_id"=>180175, "categories"=>["Biotechnology", "Genetics", "Developmental Biology", "Plant Biology"], "users"=>["Rumi Tominaga-Wada", "Yuka Nukumizu", "Shusei Sato", "Takuji Wada"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0054019.g003", "stats"=>{"downloads"=>1, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Tomato_SlTRY_and_SlGL3_gene_expression_/180175", "title"=>"Tomato <i>SlTRY</i> and <i>SlGL3</i> gene expression.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-01-11 00:02:55"}
  • {"files"=>["https://ndownloader.figshare.com/files/510174"], "description"=>"<p>Primer sequences used in this study.</p>", "links"=>[], "tags"=>["sequences"], "article_id"=>180669, "categories"=>["Biotechnology", "Genetics", "Developmental Biology", "Plant Biology"], "users"=>["Rumi Tominaga-Wada", "Yuka Nukumizu", "Shusei Sato", "Takuji Wada"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0054019.t001", "stats"=>{"downloads"=>1, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Primer_sequences_used_in_this_study_/180669", "title"=>"Primer sequences used in this study.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-01-11 00:11:09"}
  • {"files"=>["https://ndownloader.figshare.com/files/509403"], "description"=>"<p>(A) Sequence alignment of SlTRY (Solyc01g095640.1.1), TRY (AC007288) and CPC (FJ268773). Shaded letters indicate identical residues. R3 MYB domains are indicated by a line above the sequences. (B) Phylogenic tree based on deduced amino acid sequences of CPC-like R3 MYB proteins [SlTRY, TRY, CPC, ETC1 (NM100020), ETC2 (FJ972652), ETC3/CPL3 (AB264292), TCL1 (FJ972675), TCL2/CPL4 (FJ972681), Os1g43180 and Os1g43230] were aligned with a multiple alignment program (Genetyx ver. 16.0.2 software, Genetyx, Tokyo, Japan), and a dendrogram was created using clustering with the Unweighted Pair Group Method with Arithmetic Mean (UPGMA). Branch length indicates relative evolutionary distances. Numbers above branches are genetic distances based on 10,000 bootstrap replicates. Distances are shown as the p-distance.</p>", "links"=>[], "tags"=>["phylogenic", "cpc-like", "r3", "myb"], "article_id"=>179900, "categories"=>["Biotechnology", "Genetics", "Developmental Biology", "Plant Biology"], "users"=>["Rumi Tominaga-Wada", "Yuka Nukumizu", "Shusei Sato", "Takuji Wada"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0054019.g001", "stats"=>{"downloads"=>1, "page_views"=>12, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Amino_acid_sequence_and_phylogenic_tree_of_CPC_like_R3_MYB_proteins_/179900", "title"=>"Amino acid sequence and phylogenic tree of CPC-like R3 MYB proteins.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-01-11 02:45:00"}
  • {"files"=>["https://ndownloader.figshare.com/files/509902"], "description"=>"<p>(A) Trichome formation on 2-week-old Arabidopsis third leaves of wild-type Col-0 and <i>GL3::SlGL3</i> (#1, #2, #3, #4 and #5). (B) Trichome formation on 2-week-old Arabidopsis third leaves of wild-type Col-0, <i>gl3-7454</i> mutant and <i>CPC</i>::<i>SlTRY</i> in <i>gl3-7454</i> (#1, #2, #3, #4 and #5). Number of trichomes per leaf was determined by counting a minimum of five 2-week-old third leaves from each line. (C) Root hair formation in 5-day-old Arabidopsis seedlings of wild-type Col-0 and <i>GL3::SlGL3</i> (#1, #2, #3, #4 and #5). (D) Root hair formation in 5-day-old Arabidopsis seedlings of wild-type Col-0, <i>gl3-7454</i> mutant and <i>CPC</i>::<i>SlTRY</i> in <i>gl3-7454</i> (#1, #2, #3, #4 and #5). The number of root hairs per mm was determined by counting a minimum of ten 5-day-old seedlings from each line. Error bars indicate the standard error. Bars marked with asterisks indicate a significant difference between the wild-type Col-0 and the transgenic lines [(A), (C)], or the <i>gl3-7454</i> mutant and the transgenic lines [(B), (D)] by Student’s <i>t</i>-test (P<0.050). Trichome phenotypes of <i>gl3-7454</i> (E), <i>GL3::SlGL3</i> (F), and <i>GL3::SlGL3</i> in <i>gl3-7454</i> (G). Root hair phenotypes of <i>gl3-7454</i> (H), <i>GL3::SlGL3</i> (I), and <i>GL3::SlGL3</i> in <i>gl3-7454</i> (J). Scale bars: 1 mm.</p>", "links"=>[], "tags"=>["phenotypes", "transgenic"], "article_id"=>180402, "categories"=>["Biotechnology", "Genetics", "Developmental Biology", "Plant Biology"], "users"=>["Rumi Tominaga-Wada", "Yuka Nukumizu", "Shusei Sato", "Takuji Wada"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0054019.g005", "stats"=>{"downloads"=>1, "page_views"=>19, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Trichome_and_root_hair_phenotypes_of_GL3_SlGL3_transgenic_plants_/180402", "title"=>"Trichome and root hair phenotypes of <i>GL3::SlGL3</i> transgenic plants.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-01-11 00:06:42"}
  • {"files"=>["https://ndownloader.figshare.com/files/510204"], "description"=>"<p>Data, including s.d., were obtained from at least 10 two-week-old third leaves from each line.</p>", "links"=>[], "tags"=>["genetics and genomics", "plant biology", "biotechnology", "developmental biology"], "article_id"=>180703, "categories"=>["Biotechnology", "Genetics", "Developmental Biology", "Plant Biology"], "users"=>["Rumi Tominaga-Wada", "Yuka Nukumizu", "Shusei Sato", "Takuji Wada"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0054019.t002", "stats"=>{"downloads"=>1, "page_views"=>44, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Trichome_branch_numbers_/180703", "title"=>"Trichome branch numbers.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-01-11 00:11:43"}
  • {"files"=>["https://ndownloader.figshare.com/files/509567"], "description"=>"<p>(A) Sequence alignment of SlGL3 (Solyc08g081140.2.1), GL3 (AF246291) and EGL3 (NM20235). Shaded letters indicate identical residues. bHLH regions are indicated as line above the sequences. (B) Phylogenic tree based on deduced amino acid sequences of bHLH proteins [SlGL3, GL3, EGL3, TT8 (AJ277509), AtMYC1 (AF251697), AtbHLH003 (AF251688), AtbHLH004 (AF251689), AtbHLH005 (AF251690), AtbHLH006 (X99548), AtbHLH013 (AY120752), AtbHLH014 (AJ619812), AtbHLH017 (AY094399), AtbHLH018 (AF488562), AtbHLH025 (AF488567) and AtbHLH028 (AF252636)] aligned with a multiple alignment program (Genetyx ver. 16.0.2 software, Genetyx, Tokyo, Japan). The dendrogram was created using clustering with the Unweighted Pair Group Method with Arithmetic Mean (UPGMA). Branch length indicates relative evolutionary distances. Numbers above branches are genetic distances based on 10,000 bootstrap replicates. Distances are shown as the p-distance. Subdivision groups of Arabidopsis bHLH proteins (Group IIId, IIIe, IIIf and IVa) are shown to the right of the gene names.</p>", "links"=>[], "tags"=>["phylogenic", "bhlh"], "article_id"=>180065, "categories"=>["Biotechnology", "Genetics", "Developmental Biology", "Plant Biology"], "users"=>["Rumi Tominaga-Wada", "Yuka Nukumizu", "Shusei Sato", "Takuji Wada"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0054019.g002", "stats"=>{"downloads"=>1, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Amino_acid_sequence_and_phylogenic_tree_of_bHLH_proteins_/180065", "title"=>"Amino acid sequence and phylogenic tree of bHLH proteins.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-01-11 00:01:05"}
  • {"files"=>["https://ndownloader.figshare.com/files/509768"], "description"=>"<p>(A) Trichome formation on 2-week-old Arabidopsis third leaves of wild-type Col-0 and <i>CPC</i>::<i>SlTRY</i> (#1, #2, #3, #4 and #5). (B) Trichome formation on 2-week-old Arabidopsis third leaves of wild-type Col-0, <i>cpc-2</i> mutant and <i>CPC</i>::<i>SlTRY</i> in <i>cpc-2</i> (#1, #2, #3, #4 and #5). Number of trichomes per leaf was determined by counting a minimum of five 2-week-old third leaves from each line. (C) Root hair formation in 5-day-old Arabidopsis seedlings of wild-type Col-0 and <i>CPC</i>::<i>SlTRY</i> (#1, #2, #3, #4 and #5). (D) Root hair formation in 5-day-old Arabidopsis seedlings of wild-type Col-0, <i>cpc-2</i> mutant and <i>CPC</i>::<i>SlTRY</i> in <i>cpc-2</i> (#1, #2, #3, #4 and #5). The number of root hairs per mm was determined by counting a minimum of ten 5-day-old seedlings from each line. Error bars indicate the standard error. Bars marked with asterisks indicate a significant difference between the wild-type Col-0 and the transgenic lines (C), or the <i>CPC-2</i> mutant and the transgenic lines (D) by Student’s <i>t</i>-test (P<0.050). Trichome phenotypes of wild-type Col-0 (E), <i>cpc-2</i> (F), <i>CPC::SlTRY</i> (G) and <i>CPC::SlTRY</i> in <i>cpc-2</i> (H). Root hair phenotypes of wild-type Col-0 (I), <i>cpc-2</i> (J), <i>CPC::SlTRY</i> (K) and <i>CPC::SlTRY</i> in <i>cpc-2</i> (L). Scale bars: 1 mm.</p>", "links"=>[], "tags"=>["phenotypes", "transgenic"], "article_id"=>180274, "categories"=>["Biotechnology", "Genetics", "Developmental Biology", "Plant Biology"], "users"=>["Rumi Tominaga-Wada", "Yuka Nukumizu", "Shusei Sato", "Takuji Wada"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0054019.g004", "stats"=>{"downloads"=>2, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Trichome_and_root_hair_phenotypes_of_CPC_SlTRY_transgenic_plants_/180274", "title"=>"Trichome and root hair phenotypes of <i>CPC::SlTRY</i> transgenic plants.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-01-11 00:04:34"}
  • {"files"=>["https://ndownloader.figshare.com/files/510008"], "description"=>"<p>Real-time reverse transcription PCR analyses of the <i>GL2</i> gene in wild-type Col-0 and <i>CPC</i>::<i>SlTRY</i> (#1, #2, #3, #4 and #5) (A), and wild-type Col-0, <i>cpc-2</i> mutant and <i>CPC</i>::<i>SlTRY</i> in <i>cpc-2</i> (#1, #2, #3, #4 and #5) (B). Expression levels were normalized to <i>Act2</i> expression. An expression level of <i>GL2</i> in each line relative to that in wild-type was indicated. The experiments were repeated three times. Error bars indicate the standard error. Bars marked with asterisks indicate a significant difference between the wild-type Col-0 and the transgenic lines (A), or the <i>cpc-2</i> mutant and the transgenic lines (B) by Student’s <i>t</i>-test (P<0.050).</p>", "links"=>[], "tags"=>["transgenic"], "article_id"=>180511, "categories"=>["Biotechnology", "Genetics", "Developmental Biology", "Plant Biology"], "users"=>["Rumi Tominaga-Wada", "Yuka Nukumizu", "Shusei Sato", "Takuji Wada"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0054019.g006", "stats"=>{"downloads"=>0, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_GL2_expression_in_the_CPC_SlTRY_transgenic_plants_/180511", "title"=>"<i>GL2</i> expression in the <i>CPC::SlTRY</i> transgenic plants.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-01-11 00:08:31"}

PMC Usage Stats | Further Information

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Relative Metric

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