A Common Garden Test of Host-Symbiont Specificity Supports a Dominant Role for Soil Type in Determining AMF Assemblage Structure in Collinsia sparsiflora
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{"title"=>"A Common Garden Test of Host-Symbiont Specificity Supports a Dominant Role for Soil Type in Determining AMF Assemblage Structure in Collinsia sparsiflora", "type"=>"journal", "authors"=>[{"first_name"=>"Shannon P.", "last_name"=>"Schechter", "scopus_author_id"=>"24391620600"}, {"first_name"=>"Thomas D.", "last_name"=>"Bruns", "scopus_author_id"=>"35578568900"}], "year"=>2013, "source"=>"PLoS ONE", "identifiers"=>{"scopus"=>"2-s2.0-84873491569", "doi"=>"10.1371/journal.pone.0055507", "sgr"=>"84873491569", "isbn"=>"1932-6203 (Electronic)\\r1932-6203 (Linking)", "pmid"=>"23393588", "issn"=>"19326203", "pui"=>"368294436"}, "id"=>"acf16178-8ec1-3e54-afea-54a9bca3bfdc", "abstract"=>"Specialization in plant host-symbiont-soil interactions may help mediate plant adaptation to edaphic stress. Our previous field study showed ecological evidence for host-symbiont specificity between serpentine and non-serpentine adapted ecotypes of Collinsia sparsiflora and arbuscular mycorrrhizal fungi (AMF). To test for adapted plant ecotype-AMF specificity between C. sparsiflora ecotypes and field AMF taxa, we conducted an AMF common garden greenhouse experiment. We grew C. sparsiflora ecotypes individually in a common pool of serpentine and non-serpentine AMF then identified the root AMF by amplifying rDNA, cloning, and sequencing and compared common garden AMF associates to serpentine and non-serpentine AMF controls. Mixing of serpentine and non-serpentine AMF soil inoculum resulted in an intermediate soil classified as non-serpentine soil type. Within this common garden both host ecotypes associated with AMF assemblages that resembled those seen in a non-serpentine soil. ANOSIM analysis and MDS ordination showed that common garden AMF assemblages differed significantly from those in the serpentine-only controls (R = 0.643, P<0.001), but were similar the non-serpentine-only control AMF assemblages (R = 0.081, P<0.31). There was no evidence of adapted host ecotype-AMF specificity. Instead soil type accounted for most of the variation AM fungi association patterns, and some differences between field and greenhouse behavior of individual AM fungi were found.", "link"=>"http://www.mendeley.com/research/common-garden-test-hostsymbiont-specificity-supports-dominant-role-soil-type-determining-amf-assembl", "reader_count"=>42, "reader_count_by_academic_status"=>{"Unspecified"=>3, "Professor > Associate Professor"=>2, "Researcher"=>10, "Student > Doctoral Student"=>5, "Student > Ph. D. Student"=>6, "Student > Postgraduate"=>1, "Student > Master"=>11, "Student > Bachelor"=>3, "Lecturer"=>1}, "reader_count_by_user_role"=>{"Unspecified"=>3, "Professor > Associate Professor"=>2, "Researcher"=>10, "Student > Doctoral Student"=>5, "Student > Ph. D. Student"=>6, "Student > Postgraduate"=>1, "Student > Master"=>11, "Student > Bachelor"=>3, "Lecturer"=>1}, "reader_count_by_subject_area"=>{"Unspecified"=>4, "Environmental Science"=>6, "Biochemistry, Genetics and Molecular Biology"=>1, "Agricultural and Biological Sciences"=>29, "Social Sciences"=>1, "Earth and Planetary Sciences"=>1}, "reader_count_by_subdiscipline"=>{"Social Sciences"=>{"Social Sciences"=>1}, "Earth and Planetary Sciences"=>{"Earth and Planetary Sciences"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>29}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>1}, "Unspecified"=>{"Unspecified"=>4}, "Environmental Science"=>{"Environmental Science"=>6}}, "reader_count_by_country"=>{"United States"=>2, "Kenya"=>1, "Switzerland"=>1, "New Caledonia"=>1}, "group_count"=>2}

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/494709"], "description"=>"<p>The non-metric multi-dimensional scaling ordination is a configuration of the samples in which relative positions are assigned based on the Bray–Curtis similarity matrix of the data so that samples closer together have a higher similarity of component taxa than samples farther apart and overlapping samples are highly similar. The nonmetric scale of the ordination does not assign values to the axes. Note: S1 plants growing in non-serpentine-only control grew poorly and resulted in insufficient root tissue mass for downstream molecular identification of AMF associates.</p>", "links"=>[], "tags"=>["multi-dimensional", "scaling", "ordination", "amf", "assemblages", "ecotype", "populations", "grown", "serpentine", "non-serpentine", "represents", "assemblage", "pooled", "seedling"], "article_id"=>165192, "categories"=>["Plant Biology"], "users"=>["Shannon P. Schechter", "Thomas D. Bruns"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0055507.g001", "stats"=>{"downloads"=>1, "page_views"=>12, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Non_metric_multi_dimensional_scaling_ordination_of_AMF_assemblages_associated_with_ecotype_populations_S1_S2_NS1_and_NS3_of_Collinsia_sparsiflora_grown_in_a_common_garden_of_serpentine_and_non_serpentine_AMF_each_point_represents_AMF_assemblage_from_a_po/165192", "title"=>"Non-metric multi-dimensional scaling ordination of AMF assemblages associated with ecotype populations (S1, S2, NS1, and NS3) of <i>Collinsia sparsiflora</i> grown in a common garden of serpentine and non-serpentine AMF (each point represents AMF assemblage from a pooled sample of two seedling replicates), serpentine soil control or non-serpentine soil control AMF (each data point represents AMF assemblage from a pooled sample of four seedling replicates).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-05 01:26:32"}
  • {"files"=>["https://ndownloader.figshare.com/files/482546", "https://ndownloader.figshare.com/files/482550", "https://ndownloader.figshare.com/files/482551", "https://ndownloader.figshare.com/files/482552"], "description"=>"<div><p>Specialization in plant host-symbiont-soil interactions may help mediate plant adaptation to edaphic stress. Our previous field study showed ecological evidence for host-symbiont specificity between serpentine and non-serpentine adapted ecotypes of <em>Collinsia sparsiflora</em> and arbuscular mycorrrhizal fungi (<b>AMF</b>). To test for adapted plant ecotype-AMF specificity between <em>C. sparsiflora</em> ecotypes and field AMF taxa, we conducted an AMF common garden greenhouse experiment. We grew <em>C. sparsiflora</em> ecotypes individually in a common pool of serpentine and non-serpentine AMF then identified the root AMF by amplifying rDNA, cloning, and sequencing and compared common garden AMF associates to serpentine and non-serpentine AMF controls. Mixing of serpentine and non-serpentine AMF soil inoculum resulted in an intermediate soil classified as non-serpentine soil type. Within this common garden both host ecotypes associated with AMF assemblages that resembled those seen in a non-serpentine soil. ANOSIM analysis and MDS ordination showed that common garden AMF assemblages differed significantly from those in the serpentine-only controls (R = 0.643, <em>P</em><0.001), but were similar the non-serpentine-only control AMF assemblages (R = 0.081, <em>P</em><0.31). There was no evidence of adapted host ecotype-AMF specificity. Instead soil type accounted for most of the variation AM fungi association patterns, and some differences between field and greenhouse behavior of individual AM fungi were found.</p> </div>", "links"=>[], "tags"=>["host-symbiont", "specificity", "supports", "determining", "amf", "assemblage"], "article_id"=>155849, "categories"=>["Plant Biology"], "users"=>["Shannon P. Schechter", "Thomas D. Bruns"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0055507.s001", "https://dx.doi.org/10.1371/journal.pone.0055507.s002", "https://dx.doi.org/10.1371/journal.pone.0055507.s003", "https://dx.doi.org/10.1371/journal.pone.0055507.s004"], "stats"=>{"downloads"=>8, "page_views"=>48, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/A_Common_Garden_Test_of_Host_Symbiont_Specificity_Supports_a_Dominant_Role_for_Soil_Type_in_Determining_AMF_Assemblage_Structure_in_Collinsia_sparsiflora__/155849", "title"=>"A Common Garden Test of Host-Symbiont Specificity Supports a Dominant Role for Soil Type in Determining AMF Assemblage Structure in <em>Collinsia sparsiflora</em>", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-02-05 01:37:29"}
  • {"files"=>["https://ndownloader.figshare.com/files/494872"], "description"=>"<p>Note: S1 plants growing in non-serpentine-only control grew poorly and resulted in insufficient root tissue mass for downstream molecular identification of AMF associates. Italicized OTUs show ecotype effects. Bold type OTUs are discussed in text.</p>a<p>Operational taxonomic unit,</p>b<p>serpentine ecotype populations,</p>c<p>non-serpentine ecotype populations.</p>", "links"=>[], "tags"=>["abundance", "matrix", "am", "fungal", "taxa", "serpentine", "non-serpentine", "ecotypes"], "article_id"=>165386, "categories"=>["Plant Biology"], "users"=>["Shannon P. Schechter", "Thomas D. Bruns"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0055507.t002", "stats"=>{"downloads"=>1, "page_views"=>12, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Relative_abundance_matrix_of_AM_fungal_taxa_associated_with_serpentine_and_non_serpentine_ecotypes_of_Collinsia_sparsiflora_growing_in_a_common_garden_of_serpentine_and_non_serpentine_AM_fungi_/165386", "title"=>"Relative abundance matrix of AM fungal taxa associated with serpentine and non-serpentine ecotypes of <i>Collinsia sparsiflora</i> growing in a common garden of serpentine and non-serpentine AM fungi.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-05 01:29:46"}
  • {"files"=>["https://ndownloader.figshare.com/files/494768"], "description"=>"<p><i>C. sparsiflora</i> ecotypes populations (S1, S2, NS1, and NS3) were grown in a) the field (Schechter and Bruns (2008) or grown in b) a common garden of mixed serpentine and non-serpentine AMF in the greenhouse.</p>", "links"=>[], "tags"=>["otu", "abundance", "amf", "ecotype", "populations"], "article_id"=>165285, "categories"=>["Plant Biology"], "users"=>["Shannon P. Schechter", "Thomas D. Bruns"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0055507.g002", "stats"=>{"downloads"=>1, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Comparison_of_the_average_OTU_relative_abundance_of_AMF_associated_with_the_Collinsia_sparsiflora_ecotype_populations_in_the_field_versus_in_a_common_garden_/165285", "title"=>"Comparison of the average OTU relative abundance of AMF associated with the <i>Collinsia sparsiflora</i> ecotype populations in the field versus in a common garden.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-05 01:28:05"}
  • {"files"=>["https://ndownloader.figshare.com/files/494835"], "description"=>"<p>Values are means (N = 10) with standard deviation in parentheses. No significant differences (<i>P</i><0.05) were found for any parameter measured.</p>", "links"=>[], "tags"=>["ecotype", "populations", "grown", "serpentine", "non-serpentine", "am"], "article_id"=>165358, "categories"=>["Plant Biology"], "users"=>["Shannon P. Schechter", "Thomas D. Bruns"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0055507.t001", "stats"=>{"downloads"=>1, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Results_of_the_harvest_of_Collinsia_sparsiflora_ecotype_populations_S1_S2_NS1_and_NS3_after_being_grown_in_a_common_garden_of_serpentine_and_non_serpentine_AM_fungi_/165358", "title"=>"Results of the harvest of <i>Collinsia sparsiflora</i> ecotype populations (S1, S2, NS1, and NS3) after being grown in a common garden of serpentine and non-serpentine AM fungi.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-05 01:29:18"}

PMC Usage Stats | Further Information

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  • {"unique-ip"=>"7", "full-text"=>"7", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"10"}

Relative Metric

{"start_date"=>"2013-01-01T00:00:00Z", "end_date"=>"2013-12-31T00:00:00Z", "subject_areas"=>[{"subject_area"=>"/Biology and life sciences/Evolutionary biology", "average_usage"=>[302, 488, 607, 717, 832, 931, 1024, 1117, 1212, 1302, 1389, 1469, 1535]}, {"subject_area"=>"/Ecology and environmental sciences/Environmental chemistry", "average_usage"=>[203, 348, 442, 542, 627, 713, 771, 830, 903, 967, 1053, 1107, 1155]}, {"subject_area"=>"/Ecology and environmental sciences/Plant ecology", "average_usage"=>[253, 410]}, {"subject_area"=>"/Ecology and environmental sciences/Soil science", "average_usage"=>[210, 380, 471, 583, 685, 794, 892, 970, 1057, 1134, 1219, 1297, 1351]}, {"subject_area"=>"/Physical sciences/Chemistry", "average_usage"=>[247, 429, 544, 647, 747, 842, 929, 1012, 1099, 1179, 1263, 1339, 1409]}]}
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