Origin of African Physacanthus (Acanthaceae) via Wide Hybridization
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{"title"=>"Origin of African Physacanthus (Acanthaceae) via Wide Hybridization", "type"=>"journal", "authors"=>[{"first_name"=>"Erin A.", "last_name"=>"Tripp", "scopus_author_id"=>"16246643000"}, {"first_name"=>"Siti", "last_name"=>"Fatimah", "scopus_author_id"=>"57190933331"}, {"first_name"=>"Iain", "last_name"=>"Darbyshire", "scopus_author_id"=>"6602297639"}, {"first_name"=>"Lucinda A.", "last_name"=>"McDade", "scopus_author_id"=>"6602734528"}], "year"=>2013, "source"=>"PLoS ONE", "identifiers"=>{"isbn"=>"1932-6203", "sgr"=>"84873850141", "doi"=>"10.1371/journal.pone.0055677", "pui"=>"368227278", "scopus"=>"2-s2.0-84873850141", "issn"=>"19326203", "pmid"=>"23383261"}, "id"=>"fe1dc684-3ef2-388c-b456-c45322307907", "abstract"=>"Gene flow between closely related species is a frequent phenomenon that is known to play important roles in organismal evolution. Less clear, however, is the importance of hybridization between distant relatives. We present molecular and morphological evidence that support origin of the plant genus Physacanthus via \"wide hybridization\" between members of two distantly related lineages in the large family Acanthaceae. These two lineages are well characterized by very different morphologies yet, remarkably, Physacanthus shares features of both. Chloroplast sequences from six loci indicate that all three species of Physacanthus contain haplotypes from both lineages, suggesting that heteroplasmy likely predated speciation in the genus. Although heteroplasmy is thought to be unstable and thus transient, multiple haplotypes have been maintained through time in Physacanthus. The most likely scenario to explain these data is that Physacanthus originated via an ancient hybridization event that involved phylogenetically distant parents. This wide hybridization has resulted in the establishment of an independently evolving clade of flowering plants.", "link"=>"http://www.mendeley.com/research/origin-african-physacanthus-acanthaceae-via-wide-hybridization", "reader_count"=>28, "reader_count_by_academic_status"=>{"Unspecified"=>1, "Professor > Associate Professor"=>1, "Researcher"=>6, "Student > Doctoral Student"=>2, "Student > Ph. D. Student"=>7, "Student > Postgraduate"=>2, "Student > Master"=>1, "Other"=>2, "Student > Bachelor"=>2, "Professor"=>4}, "reader_count_by_user_role"=>{"Unspecified"=>1, "Professor > Associate Professor"=>1, "Researcher"=>6, "Student > Doctoral Student"=>2, "Student > Ph. D. Student"=>7, "Student > Postgraduate"=>2, "Student > Master"=>1, "Other"=>2, "Student > Bachelor"=>2, "Professor"=>4}, "reader_count_by_subject_area"=>{"Unspecified"=>2, "Environmental Science"=>1, "Nursing and Health Professions"=>1, "Agricultural and Biological Sciences"=>20, "Arts and Humanities"=>1, "Chemical Engineering"=>2, "Computer Science"=>1}, "reader_count_by_subdiscipline"=>{"Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>20}, "Computer Science"=>{"Computer Science"=>1}, "Nursing and Health Professions"=>{"Nursing and Health Professions"=>1}, "Unspecified"=>{"Unspecified"=>2}, "Environmental Science"=>{"Environmental Science"=>1}, "Chemical Engineering"=>{"Chemical Engineering"=>2}, "Arts and Humanities"=>{"Arts and Humanities"=>1}}, "reader_count_by_country"=>{"Brazil"=>2, "Germany"=>1, "Spain"=>1}, "group_count"=>1}

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/498936"], "description"=>"<p>Single chloroplast (<i>trnG-trnR</i>) gene tree showing <i>Physacanthus</i> sister to Acantheae as well as nested within Ruellieae (right). Thickened branches indicate ≥70% ML bootstrap.</p>", "links"=>[], "tags"=>["seven-gene", "acanthaceae", "molecular", "divergence", "acantheae", "progenitor", "lineages"], "article_id"=>169449, "categories"=>["Plant Biology", "Evolutionary Biology"], "users"=>["Erin A. Tripp", "Siti Fatimah", "Iain Darbyshire", "Lucinda A. McDade"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0055677.g001", "stats"=>{"downloads"=>3, "page_views"=>11, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Concatenated_seven_gene_maximum_likelihood_analysis_of_Acanthaceae_4_000_species_showing_extensive_molecular_divergence_between_Acantheae_and_Ruellieae_the_progenitor_lineages_of_Physacanthus_left_/169449", "title"=>"Concatenated seven-gene maximum likelihood analysis of Acanthaceae (>4,000 species) showing extensive molecular divergence between Acantheae and Ruellieae, the progenitor lineages of <i>Physacanthus</i> (left).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-01-30 02:37:29"}
  • {"files"=>["https://ndownloader.figshare.com/files/499319"], "description"=>"<p>In both figures, X-axis depicts aligned <i>trnG-trnR</i> sequence matrix ranging from 1 to 1151 base positions. Y-axis depicts percent sequence similarity. Figure A graphs all taxa of Acantheae (lower rectangle) and Ruellieae (upper rectangle) against that of <i>Physacanthus batanganus</i>-0 (<a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0055677#pone.0055677.s004\" target=\"_blank\">Table S1</a>). Figure B graphs all taxa of Acantheae, Ruellieae, and other <i>Physacanthus</i> against <i>Physacanthus-cylindricus</i>-0. Both <i>P. batanganus</i>-0 and <i>P. cylindricus</i>-0 are heteroplasmic (<a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0055677#pone-0055677-g001\" target=\"_blank\">Figure 1</a>). We detected no recombination. Both graphs based on sequence similarity thresholds beginning with <70% and jumping to >90% similarity (y axis), window sizes of 115 bp, and increment sizes of 55 bp (x axis).</p>", "links"=>[], "tags"=>["intermolecular", "recombination", "chloroplasts", "acantheae", "ruellieae"], "article_id"=>169832, "categories"=>["Plant Biology", "Evolutionary Biology"], "users"=>["Erin A. Tripp", "Siti Fatimah", "Iain Darbyshire", "Lucinda A. McDade"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0055677.g003", "stats"=>{"downloads"=>0, "page_views"=>1, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Two_of_numerous_tests_for_intermolecular_recombination_among_chloroplasts_of_Acantheae_and_Ruellieae_as_well_as_within_Ruellieae_and_Physacanthus_based_on_trnG_trnR_data_/169832", "title"=>"Two of numerous tests for intermolecular recombination among chloroplasts of Acantheae and Ruellieae as well as within Ruellieae and <i>Physacanthus</i> based on <i>trnG-trnR</i> data.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-01-30 02:43:52"}
  • {"files"=>["https://ndownloader.figshare.com/files/499135"], "description"=>"<p>Stars indicate two internal fossil calibrations. All branches except placement of the <i>Neuracanthus</i> lineage are strongly supported. Photographs (by Martin Cheek) of living <i>Physacanthus batanganus</i> showing variegated leaves and unique morphology (see text).</p>", "links"=>[], "tags"=>["phylogeny", "acanthaceae", "contemporaneous", "acantheae", "ruellieae"], "article_id"=>169648, "categories"=>["Plant Biology", "Evolutionary Biology"], "users"=>["Erin A. Tripp", "Siti Fatimah", "Iain Darbyshire", "Lucinda A. McDade"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0055677.g002", "stats"=>{"downloads"=>1, "page_views"=>12, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Time_calibrated_phylogeny_of_Acanthaceae_showing_contemporaneous_evolution_of_Acantheae_95_CI_8202_8202_54_8211_24_mya_and_Ruellieae_95_CI_8202_8202_55_8211_31_mya_/169648", "title"=>"Time-calibrated phylogeny of Acanthaceae showing contemporaneous evolution of Acantheae (95% CI = 54–24 mya) and Ruellieae (95% CI = 55–31 mya).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-01-30 02:40:48"}
  • {"files"=>["https://ndownloader.figshare.com/files/499444"], "description"=>"<p>Pollen of Acantheae has apertures that consist only of a colpus and lack grooves between the apertures (D). A. <i>Physacanthus batanganus</i> (Bates 139, K). B. <i>Physacanthus batanganus</i> (Bates 139, K). C. <i>Hygrophila stricta</i> (Ruellieae; Meuer 10133, US). D. <i>Stenandriopsis guineensis</i> (Acantheae; Reitsma & Reitsma 705, RSA).</p>", "links"=>[], "tags"=>["apertures", "consisting", "pore", "grooves", "pollen", "ruellieae"], "article_id"=>169960, "categories"=>["Plant Biology", "Evolutionary Biology"], "users"=>["Erin A. Tripp", "Siti Fatimah", "Iain Darbyshire", "Lucinda A. McDade"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0055677.g004", "stats"=>{"downloads"=>3, "page_views"=>111, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Pollen_of_Physacanthus_has_apertures_consisting_of_a_pore_within_a_colpus_and_has_grooves_between_the_apertures_A_B_just_like_pollen_of_Ruellieae_C_/169960", "title"=>"Pollen of <i>Physacanthus</i> has apertures consisting of a pore within a colpus, and has grooves between the apertures (A–B), just like pollen of Ruellieae (C).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-01-30 02:46:00"}
  • {"files"=>["https://ndownloader.figshare.com/files/480212", "https://ndownloader.figshare.com/files/480217", "https://ndownloader.figshare.com/files/480219", "https://ndownloader.figshare.com/files/480221", "https://ndownloader.figshare.com/files/480222", "https://ndownloader.figshare.com/files/480223", "https://ndownloader.figshare.com/files/480225", "https://ndownloader.figshare.com/files/480226", "https://ndownloader.figshare.com/files/480228", "https://ndownloader.figshare.com/files/480229"], "description"=>"<div><p>Gene flow between closely related species is a frequent phenomenon that is known to play important roles in organismal evolution. Less clear, however, is the importance of hybridization between distant relatives. We present molecular and morphological evidence that support origin of the plant genus <em>Physacanthus</em> via “wide hybridization” between members of two distantly related lineages in the large family Acanthaceae. These two lineages are well characterized by very different morphologies yet, remarkably, <em>Physacanthus</em> shares features of both. Chloroplast sequences from six loci indicate that all three species of <em>Physacanthus</em> contain haplotypes from both lineages, suggesting that heteroplasmy likely predated speciation in the genus. Although heteroplasmy is thought to be unstable and thus transient, multiple haplotypes have been maintained through time in <em>Physacanthus</em>. The most likely scenario to explain these data is that <em>Physacanthus</em> originated via an ancient hybridization event that involved phylogenetically distant parents. This wide hybridization has resulted in the establishment of an independently evolving clade of flowering plants.</p> </div>", "links"=>[], "tags"=>["african", "hybridization"], "article_id"=>154963, "categories"=>["Cell Biology", "Evolutionary Biology"], "users"=>["Erin A. Tripp", "Siti Fatimah", "Iain Darbyshire", "Lucinda A. McDade"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0055677.s001", "https://dx.doi.org/10.1371/journal.pone.0055677.s002", "https://dx.doi.org/10.1371/journal.pone.0055677.s003", "https://dx.doi.org/10.1371/journal.pone.0055677.s004", "https://dx.doi.org/10.1371/journal.pone.0055677.s005", "https://dx.doi.org/10.1371/journal.pone.0055677.s006", "https://dx.doi.org/10.1371/journal.pone.0055677.s007", "https://dx.doi.org/10.1371/journal.pone.0055677.s008", "https://dx.doi.org/10.1371/journal.pone.0055677.s009", "https://dx.doi.org/10.1371/journal.pone.0055677.s010"], "stats"=>{"downloads"=>49, "page_views"=>66, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Origin_of_African_Physacanthus_Acanthaceae_via_Wide_Hybridization__/154963", "title"=>"Origin of African <em>Physacanthus</em> (Acanthaceae) via Wide Hybridization", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-01-30 01:22:43"}
  • {"files"=>["https://ndownloader.figshare.com/files/499605"], "description"=>"<p>Table <b>1.</b> Range of pairwise sequence divergences between Acantheae and Ruellieae (Row 1) compared to total range of sequence divergence across Acanthaceae <i>sensu stricto</i> (Row 2) (values are uncorrected “p” distances).</p>", "links"=>[], "tags"=>["pairwise", "divergences", "acantheae", "ruellieae", "compared", "divergence", "acanthaceae", "uncorrected"], "article_id"=>170113, "categories"=>["Plant Biology", "Evolutionary Biology"], "users"=>["Erin A. Tripp", "Siti Fatimah", "Iain Darbyshire", "Lucinda A. McDade"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0055677.t001", "stats"=>{"downloads"=>2, "page_views"=>10, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Table_1_Range_of_pairwise_sequence_divergences_between_Acantheae_and_Ruellieae_Row_1_compared_to_total_range_of_sequence_divergence_across_Acanthaceae_sensu_stricto_Row_2_values_are_uncorrected_p_distances_/170113", "title"=>"Table <b>1.</b> Range of pairwise sequence divergences between Acantheae and Ruellieae (Row 1) compared to total range of sequence divergence across Acanthaceae <i>sensu stricto</i> (Row 2) (values are uncorrected “p” distances).", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-01-30 00:01:53"}

PMC Usage Stats | Further Information

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Relative Metric

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